Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
8D2-8D2	X:9225437..9226688	CG15370	2 stocks
8D2-8D2	X:9227137..9228827	Gr8a	8 stocks
8D2-8D2	X:9228796..9232378	CG12121	5 stocks
8D2-8D2	X:9232726..9236585	Ir8a	16 stocks
8D2-8D2	X:9236460..9236518	mir-4916
8D2-8D2	X:9236801..9243467	mxc	17 stocks
8D2-8D2	X:9243817..9245925	Larp7	4 stocks
8D2-8D2,8D4-8D9,8D4-8E2	X:9245915..9247336	amx	15 stocks
8D2-8D3,8D-8D,8D-8D	X:9247342..9250037	Dsor1	23 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
1-20	X:103615..23108331	l(1)EH275a
1-20	X:103615..23108331	ms(1)10
1-20	X:103615..23108331	l(1)M86.4
1-20	X:103615..23108331	l(1)U3
1-20	X:103615..23108331	mei-99	FBst0004882
1-20	X:103615..23108331	dh	FBst0001539
1-20	X:103615..23108331	l(1)L25.7
1-20	X:103615..23108331	l(1)M76.3
1-20	X:103615..23108331	l(1)K84.3
1-20	X:103615..23108331	l(1)Uc-1
1-20	X:103615..23108331	l(1)BP
1-20	X:103615..23108331	l(1)M95.1
1-20	X:103615..23108331	l(1)5-39-1
1-20	X:103615..23108331	ms(1)66
1-20	X:103615..23108331	ms(1)294
1-20	X:103615..23108331	l(1)K87.2
1-20	X:103615..23108331	mei-269
1-20	X:103615..23108331	ms(1)12
1-20	X:103615..23108331	l(1)VA624
1-20	X:103615..23108331	l(1)64	FBst0313556
1-20	X:103615..23108331	c(1)a
1-20	X:103615..23108331	l(1)14P11
1-20	X:103615..23108331	mei-160	FBst0004878
8A5-9A2	X:8746254..9871237	bly
8A5-9A2	X:8746254..9871237	l(1)air11
8A5-9A2	X:8746254..9871237	ctl	FBst0007106
8A5-9A2	X:8746254..9871237	l(1)1P2
8C-9D	X:8933650..10645358	l(1)TK105
8C6-9B1	X:9084194..10119289	fliD
8D-8D	X:9194656..9412383	l(1)G0453	FBst0012300

*Insertions (cytology mapped)* [Export into hitlist]
2B13--12B18	X:1860969..13757665	P{lacW}arm[G0268a]	FBst0314575
8C7-8D10	X:9084204..9385188	P{GawB}cb07	FBst0006708
8D2-8D2	X:9223747..9248881	TI{TI}mxc[sfGFP]	FBst0092330
8D2-8D2	X:9223747..9248881	TI{TI}mxc[mRuby3]
8D2-8D2	X:9223747..9248881	TI{TI}amx[EGFP]
8D2-8D2	X:9223747..9248881	TI{TI}Gr8a[GFP]
8D2-8D2	X:9223747..9248881	TI{TI}mxc[mScarlet]
8D2-8D2	X:9223747..9248881	TI{TI}mxc[APEX2]
8D2-8D2	X:9223747..9248881	P{GSV1}GS1202
8D2-8D2	X:9223747..9248881	TI{TI}Ir8a[1]	FBst0041744
8D2-8D2	X:9223747..9248881	TI{2A-QF2}Ir8a[2A-QF2]	2 stocks
8D2-8D2	X:9223747..9248881	TI{y[wing2+]}amx[ΔCDS]	FBst0080096

*Insertions (sequence mapped)* [Export into hitlist]
8D2_r6	X:9225181..9225181	PBac{WH}f01385	FBst0018433
8D2	X:9225389..9225389	Mi{MIC}MI05231	FBst0042068
8D2	X:9226850..9226850	Mi{ET1}MB03163
8D2	X:9227151..9227151	Mi{MIC}Gr8a[MI15548]	FBst0061085
8D2-8D2	X:9228270..9228270	P{EP}Gr8a[G17495]
8D2	X:9232222..9232222	P{EP}CG12121[G1121]	FBst0033538
8D2	X:9232489..9232489	P{GSV2}GS7410	FBst0322403
8D10	X:9243471..9243471	P{EPgy2}EY14474	FBst0020936
8D2	X:9243860..9243860	P{GSV1}GS1021	FBst0308084
8D10	X:9247113..9247113	PBac{WH}amx[f06362]	FBst0018969
8D2-8D2	X:9247324..9247835	P{Mae-UAS.6.11}amx[GG01216]	FBst0013361
8D2	X:9248316..9248316	P{EP}Dsor1[G9740]	FBst1023153

*Deleted segments (sequence mapped)* [Export into hitlist]
8B--8E	X:8877627..9554623	Df(1)M38-C5	2 stocks
8C4--8E4	X:9081000..9500254	Df(1)BSC537
8C17--8E4	X:9187545..9500217	Df(1)BSC538
8D1--8D5	X:9217347..9284575	Df(1)BSC663	FBst0026515
8D2--8D3	X:9247113..9252165	Df(1)Exel9049	2 stocks

*Duplicated segments (sequence mapped)* [Export into hitlist]
8C12--8D2	X:9132598..9243948	Dp(1;3)DC204	FBst0033483
8C13--8D2	X:9144498..9237140	Dp(1;3)DC502	FBst0033492
8C14--8D6	X:9157998..9316100	Dp(1;3)RC023	FBst0042030
8D2--8D7	X:9238238..9323855	Dp(1;3)DC205	FBst0030328

*Deleted segments (cytology mapped)* [Export into hitlist]
2D--12B6	X:2083109..13754475	Df(1)w71b
3A10--12A8	X:2658572..13623898	Df(1)w70j
3B5--12A10	X:2753186..13646537	Df(1)w70e
3C--12B10	X:2804156..13757665	Df(1)LCD
7B3--12B6	X:7483043..13754475	Df(1)HM459
7F1--8E1	X:8465639..9445430	Df(1)lz1
8B5--8D9	X:8877627..9364915	Df(1)lz-90b24	2 stocks
8C2--8E2	X:9003207..9478477	Df(1)lz3
8C3--9E3	X:9006451..10756102	Df(1)t282-1
8C7--8E2	X:9084204..9478477	Df(1)9a4-5	2 stocks
8C10--8E2	X:9116819..9478477	Df(1)18.1.15	FBst0305828
8C15--8E3	X:9163010..9495618	Df(1)lz2

*Duplicated segments (cytology mapped)* [Export into hitlist]
3A--11E	X:2328358..13346259	Dp(1;1)SM2
4C12--8F10	X:4668106..9709556	Dp(1;1)J2.1
7B5--10C5	X:7631962..11559989	Dp(1;1)L72.2
8A3--8D12	X:8718633..9412383	Dp(1;1)M64.3
8C--8D9	X:8933650..9364915	Dp(1;4)A17	FBst0025919
8D1--8F	X:9194656..9709556	Dp(1;1)lz-1
8D1--8D8	X:9194656..9347774	Dp(1;1)lz-2

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
1A-10A	X:103615..11198803	In(1)T2
1B1-20D	X:408583..22716656	In(1)y[A74e]
1B1-20D	X:408583..22716656	In(1)y[A74b51]
1B1-20A	X:408583..21675680	In(1)y[A79d2]
1B1-20A	X:408583..21675680	In(1)y[A72d3]
1B1-20A	X:408583..21675680	In(1)y[89d68]
1B1-19E8	X:408583..21086629	In(1)y[88f86]
1B1-18D2	X:408583..19573161	In(1)y[88c63]
1B1-16D	X:408583..17841787	In(1)y[A79b21]
1B1-16C8	X:408583..17761755	In(1)y[A76b94]
1B1-11E3	X:408583..13217908	In(1)y[85f2]
1B-10A	X:408583..11198803	In(1)GJ5
1B1-9D	X:408583..10645358	In(1)y[A74c166]
1C-10B	X:660484..11489173	In(1)65
1F-14A	X:1254810..16113516	In(1)C146
2B5-20F	X:1660982..23108331	In(1)GA106
2B5-20A	X:1660982..21675680	In(1)VE891
2D-14F	X:2083109..16667591	In(1)Mg96
3B1-20F	X:2666235..23108331	In(1)GE257
3B1-20A	X:2666235..21675680	In(1)GE228
3B1-12F2	X:2666235..14718166	In(1)62b12
3C-20F	X:2804156..23108331	In(1)w[is]
3C2-20C	X:2845023..22597814	In(1)w[77d]
3C2-20B	X:2845023..22371346	In(1)w83c19
3C2-20B	X:2845023..22371346	In(1)w88f83
3C2-19E	X:2845023..21086629	In(1)w88c87
3C2-19E4	X:2845023..20921597	In(1)w[89e52]
3C2-18F	X:2845023..19887081	In(1)w[EM20]
3C2-18E	X:2845023..19747669	In(1)w[81f3]
3C2-18C	X:2845023..19555536	In(1)w8631-1A
3C2-17D	X:2845023..18803707	In(1)w[89e12]
3C2-16D	X:2845023..17841787	In(1)w79b3
3C2-12B9	X:2845023..13755214	In(1)z[+64b9]
3C2-9A2	X:2845023..9871237	In(1)w88c60
3C2-8F	X:2845023..9709556	In(1)w72b
3C3-20D2	X:2907915..22716656	In(1)w[m54l]
3C5-20A	X:2976542..21675680	In(1)C171
3C7-19E	X:3102328..21086629	In(1)N[8d5]
3C7-14B	X:3102328..16363596	In(1)N[298]
3C7-8E	X:3102328..9600460	In(1)N[P]
4-17B	X:3955447..18502714	In(1)SMG3
4A-14D	X:3955447..16520529	In(1)Dem1-1
4-9	X:3955447..10976635	In(1)M3
4D-17B	X:4749024..18502714	In(1)St-D
4D-12E	X:4749024..14510750	In(1)Dem1-2
4D-9A	X:4749024..10055610	In(1)U7.4cm1
4E-20F	X:4964040..23108331	In(1)l-v132
5A-16E	X:5475817..17883261	In(1)IW1
5B-19D	X:5697153..20604985	In(1)89e80
5B-11A7	X:5697153..12294293	In(1)V7-12
5C-12C1	X:5766003..13767270	In(1)rdgB5
5C-8F	X:5766003..9709556	In(1)Mg83
5D1-15A1	X:5955321..16701269	In(1)r[hd1-4]
5E-12D	X:6198962..14080987	In(1)T3
5E-10C	X:6198962..11607195	In(1)IW2
6A1-19E8	X:6400666..21086629	In(1)RF19	2 stocks
6D-11A	X:6779511..12525916	In(1)St-B
6F-13B	X:7033899..15372314	In(1)Uc6F-13B
6F-10B2	X:7033899..11323404	In(1)HA68
6F-9A	X:7033899..10055610	In(1)U7.2cm1
7A3-20F	X:7193760..23108331	In(1)JA9	FBst0001399
7B-15A1	X:7286018..16701269	In(1)r[70b]	2 stocks
7B-11A	X:7286018..12525916	In(1)Dem3-1
7C-20D	X:7801643..22716656	In(1)87g49
7C-16A	X:7801643..17472087	In(1)193
7C-13A	X:7801643..15131121	In(1)Dem3-3
7C-9B	X:7801643..10401341	In(1)Dem3-2
7C6-18A	X:7933671..19200032	In(1)GE219
7D-14D	X:7947830..16520529	In(1)7D-14D
7D-12A	X:7947830..13646537	In(1)Dem3-4
7E-10A	X:8246255..11198803	In(1)IB
7F10-9A4	X:8627310..10046675	In(1)N83
8C-18D	X:8933650..19676126	In(1)C176
8C-18B	X:8933650..19295064	In(1)PS2
8C-17A1	X:8933650..18188579	In(1)Px
8D-12A	X:9194656..13646537	In(1)8D;12A

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
1A-56A	X:103615..19012906	T(1;2)SP18
1B1-98C	X:408583..28383802	T(1;3)y[75r]
1B1-98C	X:408583..28383802	T(1;3)y[67k5]
1B1-60F4	X:408583..25101785	T(1;2)y[A76b37]
1B-38E	X:408583..20812419	T(1;2)OR25
1B1-36D	X:408583..17817472	T(1;2)y[260-13]
1B1-49F	X:408583..13275886	T(1;2)y[R7]
1B1-87A	X:408583..12147054	T(1;3)y[R19]
1B4-71D	X:466699..15528103	T(1;3)sc[260-15]	2 stocks
1B9-88A	X:529780..14226397	T(1;3)GA100
1C-56C	X:660484..19329544	T(1;2)DEB5
1D-46E	X:831097..10111219	T(1;2)OR39
1D4-36C	X:962726..17552485	T(1;2)GF326
1E-99A	X:991048..29468940	T(1;3)GA91	FBst0004636
1E1-71C1	X:991048..15298777	T(1;3)N3
1E4-58E	X:1185508..22584651	T(1;2)RC66
1F-99F	X:1254810..30597427	T(1;3)Dem1-8
2A-60D	X:1368553..24747488	T(1;2)OR6
2B-57D	X:1475669..21378741	T(1;2)Su(bw[D])42
2B5-54A	X:1660982..17227747	T(1;2)C123
2C-97A10	X:1972107..26362804	T(1;3)slu
2D3-52F	X:2127280..16231534	T(1;2)KC16
2D3-49A	X:2127280..12530887	T(1;2)GA113
2F-91A	X:2223442..18446794	T(1;3)29A2
3A-97A	X:2328358..26362804	T(1;3)M155
3A5-55A	X:2555321..18013902	T(1;2)N4
3B-39E	X:2666235..21684084	T(1;2)OR28
3C1-98D	X:2804156..28644088	T(1;3)ZWD9
3C-97F	X:2804156..27434247	T(1;3)OR37
3C1-39E2	X:2804156..21592349	T(1;2)w[70k18.1]
3C-57B	X:2804156..21107330	T(1;2)Ee4
3C-38E	X:2804156..20812419	T(1;2)OR84
3C-37C	X:2804156..19217604	T(1;2)OR17
3C-67F	X:2804156..10949869	T(1;3)Dem1-5
3C2-92C2	X:2845023..20037706	T(1;3)w[88c34b]
3C2-91E	X:2845023..19070332	T(1;3)w[78h]
3C2-54E	X:2845023..17811908	T(1;2)w[Ee10]
3C2-70C	X:2845023..14047681	T(1;2)w[Ee11]
3C2-87F	X:2845023..13843302	T(1;3)w[81k11]
3C7-38B	X:3102328..20098210	T(1;2)N[Uc1.26]
3D-67A	X:3312266..9333837	T(1;2)Dem1-6
3F-71E	X:3765078..15674313	T(1;3)OR66
4B-88A	X:4115669..14226397	T(1;3)OR60	6 stocks
4C-73C	X:4333244..16805146	T(1;3)OR67
4C6-71B	X:4517999..15216220	T(1;3)bi[Qd-1E4]
4D-87F	X:4749024..13843302	T(1;3)OR6
5B-35C	X:5697153..15271253	T(1;2)5B;35C
6B-90E	X:6516901..18118267	T(1;3)M150
6C-98C	X:6585391..28383802	T(1;3)OR22
6F-47C	X:7033899..10977100	T(1;2)Dem1-3
7A4-86E8	X:7203533..11545641	T(1;3)fd
7B3-60E	X:7483043..25017640	T(1;2)ct[J1]
7B3-96A	X:7483043..24840518	T(1;3)L54
7B3-96A	X:7483043..24840518	T(1;3)ct[J2]
7B3-95F	X:7483043..24380882	T(1;3)ct[J11]
7B3-36E	X:7483043..18188234	T(1;2)ct[268-26]
7B3-35C	X:7483043..15271253	T(1;2)ct[C75]
7C-53F	X:7801643..17132869	T(1;2)Dem1-4
7D-57B	X:7947830..21107330	T(1;2)Ee2
7D-51F	X:7947830..15402599	T(1;2)A3
7F-100A	X:8465639..30928228	T(1;3)M153
8B-46B	X:8768351..9869622	T(1;2)D2
8C-35D	X:8933650..15968241	T(1;2)SP75
8C-86A	X:8933650..10335171	T(1;3)M149
8D-40	X:9194656..9412383	T(1;2)OR29