X:16,505,550..16,505,550 [-]
Site of A-to-I editing in 3'UTR: para-RAR
Site of A-to-I editing in CDS: Lys 383 to Arg codon substitution in para-RAS.
Site of A-to-I editing in CDS: Lys 383 to Arg codon substitution in para-RAT.
Site of A-to-I editing in CDS: Lys 383 to Arg codon substitution in para-RAU.
Site of A-to-I editing in CDS: Lys 383 to Arg codon substitution in para-RAV.
Site of A-to-I editing in CDS: Lys 425 to Arg codon substitution in para-RBH.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RAD.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RAF.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RAG.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RAH.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RAI.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RAJ.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RAK.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RAL.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RAM.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RAW.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RAX.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RAY.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RAZ.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RBA.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RBB.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RBC.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RBD.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RBE.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RD.
Site of A-to-I editing in CDS: Lys 426 to Arg codon substitution in para-RH.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RA.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RAA.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RAB.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RAC.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RAE.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RAN.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RAO.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RAP.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RAQ.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RB.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RBF.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RBG.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RC.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RE.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RF.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RG.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RI.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RJ.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RK.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RL.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RM.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RN.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RO.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RP.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RQ.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RR.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RS.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RT.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RU.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RV.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RW.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RX.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RY.
Site of A-to-I editing in CDS: Lys 437 to Arg codon substitution in para-RZ.
Sequence
Sequence DownloaderComment: D. melanogaster, yw, adult head, ZT10, source for nuclear RNA.
Comment: 0-2 hr AEL
Comment: 2-4 hr AEL
Comment: 4-6 hr AEL
Comment: 6-8 hr AEL
Comment: 8-10 hr AEL
Comment: 10-12 hr AEL
Comment: 12-14 hr AEL
Comment: 14-16 hr AEL
Comment: 16-18 hr AEL
Comment: 18-20 hr AEL
Comment: 20-22 hr AEL
Comment: 22-24 hr AEL
Comment: 42-44hr AEL
Comment: 66-70h AEL
Comment: 83-85hr AEL
Comment: indicated as puff stage 1-2
Comment: indicated as puff stage 3-6
Comment: indicated as puff stage 7-9
Comment: aged 12 hrs after collection as white prepupae
Comment: aged 24 hrs after collection as white prepupae
Comment: aged 2 days after collection as white prepupae
Comment: aged 3 days after collection as white prepupae
Comment: aged 4 days after collection as white prepupae
Comment: aged 1 day after eclosion
Comment: aged 1 day after eclosion
Comment: aged 5 days after eclosion
Comment: aged 5 days after eclosion
Comment: aged 30 days after eclosion
Comment: aged 30 days after eclosion
RNA A-to-I editing sites as determined from short sequencing reads of cDNA prepared from 30 different developmental stages. The frequency of editing at each site throughout development is analyzed and the effects of editing on the amino acids encoded are predicted.
To identify potential sites of RNA editing, short poly(A)+ RNA-Seq reads that mapped to annotated transcripts were compared to the reference genome to find instances in which a 'G' aligned to an 'A' (for plus strand transcripts) or a 'C' aligned to a 'T' (for minus strand). The first or last six bases of reads were not examined because they were easily mismapped to introns rather than across splice junctions. Only positions with at least five reads showing a substitution from any single developmental stage were considered further. A dataset of potential editing sites with the number of edited reads and the number of non-edited reads for each sample was created. To prevent a polymorphism in the sequenced strain from being reported as editing, at least 100 reads having an exact match to the genome were necessary for further consideration of a potential editing site. Only those sites with at least 5% of reads in at least two independent adult samples showing evidence of editing are reported.
Comment: D. melanogaster, yw, adult head, ZT14, source for RNA.
Flies were entrained under 12hr:12hr light:dark cycles for 3-4 days.
