FB2025_01 , released February 20, 2025
Transcript: Dmel\lncRNA:roX1-RE
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General Information
Symbol
Dmel\lncRNA:roX1-RE
Species
D. melanogaster
Annotation Symbol
CR32777-RE
FlyBase ID
FBtr0345714
Feature type
Associated gene
Evidence Rank
Length (nt)
4832
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 261 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
      cDNA Clones, End Sequence Only (ESTs)
      Contained within the annotated transcript, internally consistent
      Sequence
      GATCATCAGTCTTTGGCGGCATGGCTAAGTGGAAACTTCTCGTAAGAAACTCTTCCCGGAGGAGTGTGGAATTTTTGTTA
      TATTTTTTTTAAAGTGCATTTTTTTTTAAAGGTGAAATTAGCTAGAGTGTGTACTGCTACTGATAGGGTGACCTAACGCA
      ACAGCAACGAGATGTGCTCCATCGGGCAGTGATAACTTCTTGGCAACCCCAACCTTAAAAATTCGACTTCAATTCAATAC
      ATGTGACCAGATAAACACAGCTTCAAGCGCATTACTCGCTCCATAGATTCATTAAACCTTAATGAACACAAGAAACACTC
      AAAAAGTAAGAGATTCTTCGCCTGAGCTGCAATTCTTAAGGGTGGCGTCTTCGAGGCATCGAAGACGCGGCTATCCGAAG
      TAGCGAAAGTGGTGCGAGTGGTGCAACTTGTGACACTGCCAGCGGAGTGGATGAGCCCCATATAAACTGAACCTTGCAGA
      CCTACAAAGACCCTATGGCCCATAAAGCCGGACAGGGTTTTCCTGTCCGAAAAGTAATGTAACGAAAACGCTTGAGATGG
      AAAATTCTGGCCGGAACGAAAGAGACAAATGAACCCAAAGCGTCCGCTTGTCGCCACTTGCGTTTCGAGAAGACGCGTAC
      GCATACCTCTATCGGATGCATGTGGCGGTACGCGGATGCGAGCGAGACAATGATACTGTAGACAAGGAGAGACGGCTCCC
      TCTCTCCATCACTCTCTATCGGGCTGGCCAGGCGTTTGCATCGCAAGCGGGTGAGTGAGACGGCCATAGGGCGGACTGCA
      AGTCCCGAAAGAGAGCGGTAAAGCCATATAACCCCTATAAGCAATAAACGACGCATCGAAAGTTGCGTATAACGGCATGG
      GCATCCCTCGGAAAGGAAAAAGTTCAGACCGCACTCACGAATACCGCTCCGCTCTGGAAAGACCGGCCAAATCTGTAAGA
      AATGCTCGGCCAGGAGCGTAGAATCGCCATAATGCAGTAAACGACTGCAAAAGCAGCTATAACTCAAACAGAAGTTGACA
      AAAGCAAGAGCTATGCGCTCTATTAAAGTCACAATAAGTGTCATCGTAACGTTCACCACTTTTCACATTTCATCAAAGTC
      CATTTCTGGTCCGTGCAAAGCAGTAATGTAGAGATTCTTTTTCATTTGAAATTGTTAGTTATCACTGCCCTAGGAACTCA
      TCAATTTTTGTGATAGTAGTGACTGAAGTATTTGTTTTGAGGGAATTAGAAGCCAGAAGATTTAGGAGCCATGCCGCCGC
      TTAAGTAAGATCTAAAAGCCAAGAAGCTACACCCAGAAGAAACTGCCACTGCATAGATTTTTGAAATGAGCAAAGAAATC
      TAAACTGAAATGGTTATCCACCAACTGAAGGCCATCGAATCTATTAAGTTTTATCCACGTTAGCACTGTTCAAAATCTCA
      AGCTAGGCTACTAAACGAACTATTCATCACAAAAGCCTCACACAAAATATTCATTCATGAATCAGTCTAGCCTATTTTTT
      CTTCTGCTTTACCATTTGAACAAGTACTCAGAAATCGCTCGAAAAGGGACATTTTGATTTTGCTTTGATTTTGTGCCTTA
      GTTTTTCAACTAACCAAAATATTGCTTACAGAAATTAATCAGTTTATTAACTGAAAAAGCCCTTAAATTAACTGCCAGGA
      GGTGAGTTTTTGTCTTCGATTCTTGGAAAACGTTGAGTAGGGGCCCAACTAAAGGAAATAGGCCAGACAAAGCCTGTAAA
      AAAAACCTATAAAAATAAAAAGTTCTAAAAGAGGCCACTGTGAAACTGTTATACAAGCTGGCCTAAAGTTATGCGTAGAA
      GAAAACGTATAAAAGTGAATAAATGTTTGCAAACGGATGTTTAAAACATGCGTTTTCTAAACGAAAGATGAAAAATAATA
      TCAAAAAGCGAATTAAGTGCTGTTCAATCGTTTGACCAGCAGTTGATTTGCGAATGGCTGAAAATATTCGCTTAAACTTA
      TGGCAAAGCTTGTTAAAATAAAAAATAAAAAATTTTAAAAGAAATAAAAATATCCTTACACCGGGCACCTACAATGCGTA
      TCCACCCGGGATTCAAGCAAAAGCTATTATTCTATTGGCCTTGATTATTAACATATTTCTATGCTGTGTGTTCTTTCAGA
      TGAGTTTTGAACAGAGACGAAACTTGGAGCCTCGCGGAGCCAAAGTTTTAAATTGATTTTTGTTTTTAATTCCCTATATT
      CGAGTCGATTTCCCGCAGTCTTTTCATTAATTTTCTTAAACATTGACTGGCTAATTCTTGAACCTCAGTTTTCATTCAAA
      AGTCATCTTTTCTTCGTTGGTCCCTGCTTGAGCTTGAAACATTGTGCCAAGAATTTTTTTCTGTTCAATTGAACCTTTTC
      TGTGCAAATGTCCTGCAGAAGAGGAAACCCATTACAGACTTGTGCTTTCTCCTGAATGTGATATGCAAGCAGGTGTAACA
      AAGCCTATGAAATCCGGTCCAACCCCACATCAGGCCATAGCCAAGAAGCTCCGCCTAATACAAGAGAAGATTATACTAAC
      CAGTTTGCTATCTTTCAGATCCGACCAGAAGTAGATCGTGTTCTGTGAACTAACCCCTTCAGTGTTCAGCACCTCGTCAA
      TTGTTCTTAATTGTTCCTTTTATTTTATGTTGTGTTTTATCTAATTAACTTCCGTTGTATTTTACCCAGTCCCCTTCCTT
      GACTTTCTAATAATTTTCCATGTTTTGACAGATCCTTTTTTGTCCCACCCGAATAACCAACCATACTATTCTTATATAAG
      GTTCGTGTTTCGGAAAACGCATTAAAAGGCGTAATTTTAAATCGTTTTCCGAAATGGGAATCACATTTAAACAATATTTT
      GAACTGCGTAAAACGAATAAATGGAACGGTATTGAAAGCCTATGCATTCATTACGGTTCAAGAAGTATAACTAAAAAAAA
      GGAATGAAAAAAAAAGAAAAGAAAAACACATTTACTAACAAATAAAAACTTGCTGATCAACGTTCTACGCAGTTCTTAAA
      AAGATGTTGAAATGAACACAGCCAAAGCAAGTAAAAATGTGTGGAAACGTTATACGAATCTTCACCAAGTGCCCAAACTA
      TAAAAAGAAAATTGAAATCGTTATACGCCTGAGCCGATTCACAAAGAAACAAAATATGTTTATACTGCGGAGCACAATAA
      AGCGAATGTTATGTGGATTTCTTTGGGAATCGGCATGGGATTCAACGTGAAGCTAGAAAATTTTTGAACTGCTAAATTAA
      ACGAAACTTGAATGATGTTAAAAATGGTCTTTATTATGGTTGGGAAAATGTGCTTTCGGCTAATTTTAAATAGTTGCAGC
      AACAAACATGGAAATCCATAATTCTCTTTAAAAAAACGCACGAAATTGACCAGCAGGAATCGGCTGGCAAACGACCTGAG
      CAATACTCGCCCACCAAAGAGGCTTGACAGAAGACAACCGAGGGACCTCATTCTCCGCTCATAAAACACTGATGCCATTA
      TTATATACAGTTCGATAGGAAATTTTGTTACGAATTCAACGAGGTATGGCATTTCCCTTTTGGTCAACTATTTTTTATGC
      TATTGAGAAAATACTGATTCTTTTTAACCAAAAATAAACAAAATAAGAATTGCCAAAAATTTGATATTTACAAACGGGGT
      TATCTCTATAAGGTGGCCAAAAAAGATATTACCGCTTAAATGAAGACTGTTTTATACTGCCAATAAACATACCTAACTAT
      CCCTATCACTATTTTTATAAATATCAAAAATAAAAATTTTAACAAATTTTCGCATTTTTGATAAAATTTTTCATTAAAAT
      TTGCGAAAAATTGCAAAAAATTTGACTTTCCATTTCTGAATACAGGTCGATAGGAAATTTTGTTACGAATTCAACGAGGT
      ATGGCATTTCACTTTTGGACAAATATTTTTTATGCTATTGAGAAAATACTGATTCTTTTTAACCAAAAATAAACAAAATA
      TGAATTGCCAAAAAGTTGATATTTACAAACGGGGTTTTTTCCATAACTTGGTAAAAAAATATATTACCGCTTAAATGAAG
      ACTGTTTTATACTGCCAATAAACATAGCTAACTATCCCTATCACTATTTTTATTATTATCAAAAAAAAAAATTTTAACAA
      ATTTTCGCATTTTTGATAAGGGGTACCATCATTAAAATTTGCGAAAAATGGCAAAAAATTTGACTTTCCATTTCTGAATA
      CAGGTCGATAGGAAATTTTGTTACGAATTCAACGAGGTATGGCATTTCACTTTTGGACAAATATTTTTTATGCTATTGAG
      AAAATACTGATTCTTTTTAACCAAAAATAAACAAAATATGAATTGCCAAAAAGTTGATATTTACAAACGGGGTCATCTCC
      ATAACCTTTCGCCACAGAAGTAAAAAGACTCTATGATTTTGTTTCTATGCATTTATTTAGAAATATTACTTTCTTCCCAT
      TCTTGTGGATGCTCGACATCTCTTATTTCGTTGTTCATATGCTGCAAAGTATCTTTTAATAATGTTATAGCAAAATAAAA
      TCGTAAAAAATTTATGTTATATGTAAGAGCTATATTAACACTAAAAATACACGTATTCGTTTAAATGCAAGACACAAAAA
      ATATTCTTAACATAATTAAGTACGACAATACAAAAATAAATGCCTTAACTGATTTAGAGTAAAATTAAAAATTATACAAA
      AAAAAAATATGTAAAAAAAATGGAAGTGCGAGTGTCGTTGGACAACAGCACGCACAAGGAAGCTCAACGACCAAGTTTCA
      AACTGCTGGCGTCTCACACAGAGAAATAAATC
      
      Other Products of this Gene
      Other Transcripts
      Name
      FlyBase ID
      Length (nt)
      FBtr0070634
      3758
      FBtr0070635
      3460
      FBtr0337066
      4421
      FBtr0337067
      3785
      Comments

      Extended 3' end based on RNA-Seq and/or EST data.

      External Crossreferences and Linkouts ( 2 )
      Crossreferences
      RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
      RNAcentral - A comprehensive ncRNA sequence collection representing all ncRNA types from a broad range of organisms
      Synonyms and Secondary IDs (2)
      Reported As
      Symbol Synonym
      lncRNA:roX1-RE
      roX1-RE
      Secondary FlyBase IDs
        References (0)