FB2025_01 , released February 20, 2025
Aberration: Dmel\Df(2L)vari48EP
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General Information
Symbol
Df(2L)vari48EP
Species
D. melanogaster
Name
FlyBase ID
FBab0046034
Feature type
chromosomal_deletion
Computed Breakpoints include
Sequence coordinates
Member of large scale dataset(s)
Nature of Aberration
Cytological Order
Progenitor
P{EP}variGE13049
(Moyer and Jacobs, 2008)
Mutagen
P-element activity
(Moyer and Jacobs, 2008)
Class of aberration (relative to wild type)
chromosomal_deletion
(Moyer and Jacobs, 2008)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Moyer and Jacobs, 2008)
Breakpoints
Causes alleles
vari48EP
(Moyer and Jacobs, 2008)
Pomp48EP
(Moyer and Jacobs, 2008)
Carries alleles
Transposon Insertions
P{?EP}vari48EP
(Moyer and Jacobs, 2008)
Formalized genetic data
Genetic mapping information
Comments

Imprecise excision of the progenitor insertion, resulting in a 4717bp deletion (coordinates 2L: 20792456...20797173) that removes part of the vari transcription unit. 416bp of the original insertions remains. The deletion also removes the 3'UTR and the 3 C-terminal amino acids of Pomp.

(Moyer and Jacobs, 2008)
Comments on Cytology
Sequence Crossreferences
DDBJ / EMBL / GenBank
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
vari
(Moyer and Jacobs, 2008)
Partially deleted / disrupted
Molecular Data
Completely deleted
Partially deleted
Pomp
(Moyer and Jacobs, 2008)
vari
(Moyer and Jacobs, 2008)
Genes NOT Deleted / Disrupted
Complementation Data
 
Pomp
(Moyer and Jacobs, 2008)
Molecular Data
 
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location (0)
    If no genes are listed here, it may be because the affected region is very large. The JBrowse insert above may show an error for the same reason, and other FlyBase tools such as CytoSearch may also fail for large regions. You can contact FlyBase for more help.
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    Phenotypic Data
    In combination with other aberrations
    NOT in combination with other aberrations
    Stocks (1)
    Notes on Origin
    Discoverer
     
    Balancer / Genotype Variants of the Aberration
     
    Separable Components
     
    Other Comments
     
    Synonyms and Secondary IDs (1)
    Reported As
    Symbol Synonym
    Df(2L)vari48EP
    Name Synonyms
    Secondary FlyBase IDs
      References (1)