FB2025_01 , released February 20, 2025
Aberration: Dmel\Dp(1;3)RC001
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General Information
Symbol
Dp(1;3)RC001
Species
D. melanogaster
Name
FlyBase ID
FBab0047272
Feature type
interchromosomal_duplication
Computed Breakpoints include
Features within 1Lt--1A1 (Estimated cytology)
Sequence coordinates
X:159,272..159,272 (Dp(1;3)RC001:bk1)
(Venken et al., 2012.4.25)
Member of large scale dataset(s)
Dps_BAC_Retrofit

A set of over 60 interchromosomal duplications derived from site-specific integration of retrofitted BACs, generated for the Bloomington Stock Center collection. BAC clones were 'retrofitted' using the plasmid TKVBL-w+ so that they were competent for Pacman style transgenesis, and inserted by phiC31-mediated recombination into the VK33 docking site on the third chromosome.

(Venken et al., 2012.4.25)
Nature of Aberration
Cytological Order
Progenitor
Mutagen
recombination
(Venken et al., 2012.4.25)
Class of aberration (relative to wild type)
interchromosomal_duplication
(Venken et al., 2012.4.25)
Class of aberration (relative to progenitor)
interchromosomal_duplication
(Venken et al., 2012.4.25)
Breakpoints
Causes alleles
Carries alleles
Transposon Insertions
PBac{RC001}VK00033
(Venken et al., 2012.4.25)
Formalized genetic data
Genetic mapping information
Comments

A duplication of sequence from the X chromosome derived from the BACR40C07 BAC clone has been inserted into the PBac{y+-attP-3B}VK00033 docking site on the 3rd chromosome using phiC31-mediated recombination. The left end of the duplicated fragment is not known (maps to arm U) the right end of the duplication is at coordinate 1:55659 , release 5.

(Venken et al., 2012.4.25)
Comments on Cytology
Sequence Crossreferences
DDBJ / EMBL / GenBank
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
Partially deleted / disrupted
Molecular Data
Completely deleted
Partially deleted
Genes NOT Deleted / Disrupted
Complementation Data
 
Molecular Data
 
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location (0)
    If no genes are listed here, it may be because the affected region is very large. The JBrowse insert above may show an error for the same reason, and other FlyBase tools such as CytoSearch may also fail for large regions. You can contact FlyBase for more help.
    In these cases, there will be no "Export to Hitlist" button to the left.
    Phenotypic Data
    In combination with other aberrations
    NOT in combination with other aberrations

    May be homozygous viable and fertile.

    (Venken et al., 2012.4.25)
    Stocks (1)
    Notes on Origin
    Discoverer
     
    Balancer / Genotype Variants of the Aberration
     
    Separable Components
     
    Other Comments
     
    Synonyms and Secondary IDs (3)
    Reported As
    Symbol Synonym
    Dp(1;3)RC001
    (Venken et al., 2012.4.25)
    RC001
    (Venken et al., 2012.4.25)
    Retro1
    (Venken et al., 2012.4.25)
    Name Synonyms
    Secondary FlyBase IDs
      References (2)