FB2025_01 , released February 20, 2025
Clone: Dmel\SD09116
Open Close
General Information
Symbol
Dmel\SD09116
Species
D. melanogaster
Name
SD09116
FlyBase ID
FBcl0277005
Feature type
Computed gene(s)
 
Collection Status
DGC gold BDGP
Known Problems
none
FlyBase assessment
    Library
    SD_cDNA
    • SD cDNA library of D. melanogaster, Schneider's Line-2 cells.
    Strain
      Vector
      Tissue Source
      Sequence Data of the Insert
      Full Length Sequence
      Total bases
      2,538
      NCBI
      Full Length sequence dataSequence Downloader
      TCAACGCGAACGGATGCACGTACTGGGCAGCGGAAAATGCAGTGAAAATTGCCAGAAAAGTCAGGGGACAGCATGTGCGG
      GCAAATTCAAGCGAAGCATTCGATTAACTGCCAGAGTGCGCGATCCACTTGATTTTCCGGGAATACCTGCCACGTTCGAC
      GGGTTTCGCGTTCTATATTTTTCGCACTGAAAATTCTCGGCTTACGCGCGCCTGTGTGTGTGGGAGTGTGTATCTGTGTA
      TCCGTGTAAAGGGCGCAGCTCGGCGAAAAACAACACCCATAAATGAGCGAAGCCAGCCTGGCGTCGCGCTTTTAATCAAA
      TTAAAATTAATTGTAGTTCAAAGCGTCGAACTCGTCCGCTTTTTTTTGTTTTTTGCGCAACTCTCTGAAAATTCAATAAG
      CACGTAAATTCCAGCACACACACAACGACTTCAACCGCGCACACACACAGATACAACGCTGCCGAGCTGGGCGAGCGAAC
      GCGAGAGCGAGAGCGAGCGCGCGATAGAGCAGGAACCCGATGCCAAGTCCCGAGGAAATCCAGTGCCACACATGCGTGTT
      GTAAATTTTAATGCGCCCAGAAAACTTGAGAAGAACGACCCAGTTCTGCTTACCATAGATAGAATATGCCAGAAGCGTTT
      TTCATCAGACCCAGGAACTCAAGAGAAACTATTTGACCCGAGAAATTGAGGCAAATGTGAAACATATGTGCGAGCTGGAG
      TGTTGGCGTTACATTTTTGGTTATTGTTCTCTTTTGACCACGAACTGAAATTGAATTAACCACTCGCGGAGACAATACGA
      GGAACAATCCAAACCAGCTGAGCAATACAATTAAGAAGACAAACGAAACATAACGAACCCAGTACCATTCCAAGTTAAAG
      CATTTAGCCCCAGCCTCCACAGAGACAAAGGAGCAACTAATCCTGCTCGTTCTATGCCACATCCTCAGCAGGTCCCACGC
      CAGCGGTAAGCAAGATTCTCGTCTACAAAATGTCCCTGGCCGACATGGGCACAGCCTCTCGATCCGCCGGCGGAGAAGGT
      GGTAGACACTATGATCTAGCCACGGGCGGAGCTGGAAGTGGGGGTCATCCAGTGGGCGGCGGTCTGCCCGGAGGCCGCAT
      GACGCACTCCCTCAGCACTCCTTCCGGGGTGGATGGCACGCCCTCCACACCCCGACATCGCGGCGGCAAAAAGCTGACTG
      TTCGCATCCAGATGCTGGACGACTCGATCACCATGTTCCAAGTACAGGCTAAAGCACTGGGCCGCGTGCTGTTTGAACAG
      GTATGCCGTCAGCTGAATTTACTGGAGGCCGACTACTTCGGCTTGGAGTACCAGGAAGTCTCCACACATACCAAATACTG
      GCTGGATCTGGAGAAGCCAATGAACCGCCAGGTGGGCCTCTCTCTTATCGATCCAGTGCTGCGCTTCTGCATCAAGTTCT
      ATACACCCGATCCAGCGCAATTGGAAGAGGAGTACACCAGGTATTTGTTCTGCTTGCAAATCAAACGAGACCTGGCCACA
      GGCAGTCTGCAGTGCAACGATAACACGGCGGCCTTAATGGCAAGCTACATTGTACAGGCGTCATGCGGCGACTTCGTTCC
      GGAGGATTATCCCGACCATACTTATCTGTCCTCGTATCGCTTTGTGCCCAACCAGGACGCCACCATGCAGCGAAAGATTA
      TGGAGAACCACAAAAAGCATGTTGGTCAATCCCCGGCGGAGGCGGACCTTAACCTCTTGGAGACGGCTCGGAGGTGTGAG
      CTGTATGGCATGAAAATGCATCCGGCGAAGGATGTGGAAGGGGTGCCGCTTAATCTGGCTGTGGCCCACATGGGCATCAC
      AGTCTTCCAGAACATCACGCGGATCAACACCTTCTCGTGGGCTAAGATACGCAAGATTTCTTTCAAGCGCAAGCGATTCC
      TGGTCAAACTGCATCCAGAGGGATATGGATATTACAAGGATACCGTGGAGTTCTTCTTCGAGGGTCGCAACGAGTGCAAA
      AACTTCTGGAAAAAATGCGTCGAAAATCACGGATTCTTCCGATGCACTGCCGTACAAAATACGCCCAGGCGCAAAACTCG
      CGTTCTCTCGCGGGGTAGTTCATTCCGCTATAGCGGAAAAACCCAGAAGCAGATTATCGAGTTCGTTCGCGAAAATTATG
      TGAAGCGCCAAAACTTCCAAAGGTATAAAACGAATTCAAGCTGAGCATTACTTTTTAATCCCAGATTTGAACATCATAAT
      TTCTGTTTGTGGTGTAACCAACTTAAAATAATGCTGACAAATTGCTTGAGTTCCTGAAGATATATATTTTCCTAACATTT
      ACTGTTGACAAATAAATACATATATTAAGCTTTTGCTAGGCAGCTTATATTTTCCAAAGCAAAACCAAAAACCAATTTCG
      CCTCAAAATTCTAATCCAGTCTTGTACGAGCATTGAATATATGTAATATATTTATTCATATACAATTATACTTTTAAGCA
      AATACAAATAATATATTCATCAGCCTACATAGCCTAAAAAAAAAAAAAAAAAAAAAAA
      
      Library Information (1)
      Library: SD_cDNA
      Description

      Cloned cDNAs prepared from polyadenylated RNA isolated from cultured cells; cell line used was not derived the iso-1 sequenced strain.

      Sample preparation

      For the SD cDNA library, Schneider L2 cells were collected.

      Protocol

      RNA was poly(A)+ selected once. oligo(dT) primed with XhoI site at end of primer for first strand synthesis; EcoRI adapter on 5' ends of clones; size fractionated on Sephacryl S-500--approximately 1-6kb. cDNA directionally cloned into EcoRI/XhoI-digested pOT2 plasmid. ~300,000 colonies were plated out and a mass plasmid DNA prep was done using Qiagen Plasmids containing the cDNA inserts were size selected on Sephacryl S-500 column in order to exclude plasmids with no insert. Early elutions were collected and transformed into DH5 alpha strain (Gibco/BRL).

      Comment
      Reported As
      Symbol Synonyms
      SD
      SD_cDNA
      References (1)
      Review (1)
      Rubin et al., 2000, Science 287(5461): 2222--2224
      A Drosophila complementary DNA resource. [FBrf0127297]
      External Crossreferences and Linkouts ( 2 )
      Linkouts
      DGRC - Stock center for Drosophila cDNAs, vectors, and cell lines
      Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
      Synonyms and Secondary IDs (0)
      Reported As
      Symbol Synonym
      Secondary FlyBase IDs
        References (0)