FB2025_01 , released February 20, 2025
Sequence Feature: Dmel\Dmel:r6:3R:17959429:17966473:+
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General Information
Symbol
Dmel\Dmel:r6:3R:17959429:17966473:+
Species
D. melanogaster
Feature type
exon_junction
FlyBase ID
FBsf0000106705
Collection
Associated gene
Genomic Location
Chromosome (arm)
3R
Sequence location

3R:17,959,429..17,966,473 [+]

Genomic Maps
Sequence Data
Length
Comments

GT..AG

Associated Information
Gene(s) (targeted or local)
    Allele(s)
      Transcripts(s)
        Polypeptide(s)
          Construct
            Experimental Data
            RNA-Seq Read Counts
            Dataset: BCM_1_RNAseq_junctions
            BCM_1_RNAseq_junctions
            Expression stage(s)
            Read Count
            embryonic stage 4 -- 9

            Comment: 2-4 hr, rep1, 75nt reads

            0
            embryonic stage 4 -- 16

            Comment: 2-16 hr, rep1, 75nt reads

            0
            embryonic stage 4 -- 16

            Comment: 2-16 hr, rep2, 100nt reads

            3
            embryonic stage 16

            Comment: 14-16 hr, rep1, 75nt reads

            0
            second instar larval stage -- third instar larval stage

            Comment: 48 to 120 hrs post egg-lay, rep1, 75nt reads

            0
            late third instar larval stage

            Comment: wandering, rep1, 75nt reads

            1
            late third instar larval stage

            Comment: wandering, rep2, 100nt reads

            0
            pupal stage

            Comment: aged 1 to 5 days after collection as third instar larvae, rep1, 75nt reads

            1
            pupal stage P6 -- pharate adult stage P10

            Comment: aged 72 hrs after collection as third instar larvae, rep1, 75nt reads

            1
            adult stage

            Comment: aged 17 days post-eclosion, rep1, 75nt reads

            0
            adult stage | female

            Comment: aged 2-3 days post-eclosion, rep1, 75nt reads

            0
            adult stage | male

            Comment: aged 2-3 days post-eclosion, rep1, 75nt reads

            0
            Total
            6
            Collection Information
            Collection: BCM_1_RNAseq_junctions
            Symbol
            BCM_1_RNAseq_junctions
            Title
            Exon junction identification from RNA-Seq assays of D. melanogaster, Canton-S strain, 10 developmental stages.
            Source and Progenitors
            Species of derivation
            D. melanogaster
            Strain of derivation
            Stage
            Tissue/Position (including subcellular localization)
            Reference
            embryonic stage 4 -- 9
            organism

            Comment: 2-4 hr, rep1, 75nt reads

            (Daines et al., 2011)
            embryonic stage 4 -- 16
            organism

            Comment: 2-16 hr, rep1, 75nt reads

            2-16 hr, rep2, 100nt reads

            (FlyBase Curators, 2016-, Daines et al., 2011)
            embryonic stage 16
            organism

            Comment: 14-16 hr, rep1, 75nt reads

            (Daines et al., 2011)
            second instar larval stage -- third instar larval stage
            organism

            Comment: 48 to 120 hrs post egg-lay, rep1, 75nt reads

            (Daines et al., 2011)
            late third instar larval stage
            organism

            Comment: wandering, rep1, 75nt reads

            wandering, rep2, 100nt reads

            (FlyBase Curators, 2016-, Daines et al., 2011)
            pupal stage
            organism

            Comment: aged 1 to 5 days after collection as third instar larvae, rep1, 75nt reads

            (Daines et al., 2011)
            pupal stage P6 -- pharate adult stage P10
            organism

            Comment: aged 72 hrs after collection as third instar larvae, rep1, 75nt reads

            (Daines et al., 2011)
            adult stage | male
            organism

            Comment: aged 2-3 days post-eclosion, rep1, 75nt reads

            (Daines et al., 2011)
            adult stage
            organism

            Comment: aged 17 days post-eclosion, rep1, 75nt reads

            (Daines et al., 2011)
            adult stage | female
            organism

            Comment: aged 2-3 days post-eclosion, rep1, 75nt reads

            (Daines et al., 2011)
            Vector of progenitor construct
            Description

            Umbrella record for 12 collections that differ by developmental stage, from embryos to aged adults. RNA junctions identified and characterized (presented in GBrowse and in RNA junction reports).

            (Daines et al., 2011.3.30)
            Additional data
            Sample preparation
            Collection preparation
            Mode of assay
            Data analysis
            Cell lines
            Observed in
            Not observed in
            Comments

            Splice acceptor site identified as a predicted recursive splice site.

            (Duff et al., 2015)

            Predicted Alternative Junction Differing in Splice Donor Site.

            Reviewed, but not incorporated into the FlyBase gene model.

            Stocks (0)
            External Crossreferences and Linkouts ( 0 )
            Synonyms and Secondary IDs (4)
            Reported As
            Symbol Synonym
            3R(+)13785091 (ratchet point)
            (Duff et al., 2015)
            3R:13785151-13792194
            (Daines et al., 2010.2.8)
            Dmel:r5:3R:13785151:13792195:+
            (FlyBase, 1992-)
            Dmel:r6:3R:17959429:17966473:+
            (FlyBase, 1992-)
            Secondary FlyBase IDs
              References (3)