Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
35A4-35B1,35A1-35A1,35A4-35B1	2L:14362069..14366840	spel1	13 stocks
35B1-35B1,35B1-35B4,35A1-35A4,35B1-35B4,35A1-35A4	2L:14378218..14381172	ppk	26 stocks
35B1-35B1,35B1-35B2,35B1-35B2	2L:14390628..14409549	elB	48 stocks
35B1-35B1	2L:14409755..14410045	lncRNA:CR44733
35B1-35B1	2L:14416729..14417331	Pburs	15 stocks
35B1-35B1	2L:14424315..14425189	Cpr35B	6 stocks
35B1-35B1	2L:14428612..14430822	lncRNA:CR44732
35B1-35B1	2L:14448409..14449009	lncRNA:CR45726
35B1-35B1	2L:14450282..14450922	CG15283	9 stocks
35B1-35B1	2L:14457113..14457338	lncRNA:CR44730

*Genes (mapped, but not to the sequence)* [Export into hitlist]
21-60	2L:7525..25255318	l(2)k17003
21-60	2L:7525..25255318	l(2)k08139
21-60	2L:7525..25255318	l(2)05315
21-60	2L:7525..25255318	ultB
21-60	2L:7525..25255318	l(2)k05510
21-60	2L:7525..25255318	l(2)k07525
21-60	2L:7525..25255318	l(2)k02113
21-60	2L:7525..25255318	su(Bar)2
21-60	2L:7525..25255318	l(2)k09316
21-60	2L:7525..25255318	l(2)k13914
21-60	2L:7525..25255318	l(2)05337
21-60	2L:7525..25255318	l(2)k06020
21-60	2L:7525..25255318	l(2)k07160
21-60	2L:7525..25255318	Su(var)2-S29
21-60	2L:7525..25255318	l(2)k15801
21-60	2L:7525..25255318	l(2)k10209	FBst0010353
21-60	2L:7525..25255318	l(2)03845
21-60	2L:7525..25255318	l(2)k00607	FBst0301118
21-60	2L:7525..25255318	M(2)34k
21-60	2L:7525..25255318	ultA
21-60	2L:7525..25255318	l(2)k11537
21-60	2L:7525..25255318	l(2)k16716
21-60	2L:7525..25255318	l(2)32e
21-60	2L:7525..25255318	l(2)k04810
21-60	2L:7525..25255318	l(2)k14403
21-60	2L:7525..25255318	l(2)09639
21-60	2L:7525..25255318	l(2)k02705
21-60	2L:7525..25255318	l(2)02321	FBst0011183
21-60	2L:7525..25255318	l(2)k09107	FBst0010860
21-60	2L:7525..25255318	fs(2)261505
21-60	2L:7525..25255318	l(2)k07332	FBst0010669
21-60	2L:7525..25255318	fs(2)80
21-60	2L:7525..25255318	l(2)03728
21-60	2L:7525..25255318	dud
21-60	2L:7525..25255318	l(2)s3997
21-60	2L:7525..25255318	ifm(2)RU6
21-60	2L:7525..25255318	l(2)k16616	FBst0301923
21-60	2L:7525..25255318	l(2)k08306
21-60	2L:7525..25255318	l(2)k10816	FBst0314113
21-60	2L:7525..25255318	l(2)k16904	FBst0301950
21-60	2L:7525..25255318	l(2)k13825
21-60	2L:7525..25255318	l(2)k08401a
21-60	2L:7525..25255318	Su(var)2-24
21-60	2L:7525..25255318	ifm(2)RU8
21-60	2L:7525..25255318	l(2)k16514
21-60	2L:7525..25255318	l(2)k12702
21-60	2L:7525..25255318	l(2)Su(Sp)
21-60	2L:7525..25255318	l(2)k09624	FBst0314085
21-60	2L:7525..25255318	l(2)k15819
21-60	2L:7525..25255318	l(2)k06408	FBst0010623
21-60	2L:7525..25255318	l(2)k09303	FBst0010874
21-60	2L:7525..25255318	l(2)k03901
21-60	2L:7525..25255318	l(2)k17039
21-60	2L:7525..25255318	l(2)10206
21-60	2L:7525..25255318	M(2)33d
21-60	2L:7525..25255318	tu-47
21-60	2L:7525..25255318	l(2)k08136
21-60	2L:7525..25255318	l(2)k00312
21-60	2L:7525..25255318	fs(2)261404
21-60	2L:7525..25255318	l(2)k02615
21-60	2L:7525..25255318	l(2)8bb
21-60	2L:7525..25255318	l(2)k14039
21-60	2L:7525..25255318	l(2)k15211
21-60	2L:7525..25255318	l(2)k14316	FBst0301828
21-60	2L:7525..25255318	l(2)k06712	FBst0004395
21-60	2L:7525..25255318	l(2)k08807	FBst0004396
21-60	2L:7525..25255318	ifm(2)RU7
21-60	2L:7525..25255318	E(var)2-88
21-60	2L:7525..25255318	l(2)k04512
21-60	2L:7525..25255318	l(2)k11702
21-60	2L:7525..25255318	l(2)94
21-60	2L:7525..25255318	l(2)k04207
21-60	2L:7525..25255318	l(2)k077
21-60	2L:7525..25255318	l(2)M65
21-60	2L:7525..25255318	l(2)01482	FBst0011062
21-60	2L:7525..25255318	l(2)06253	FBst0011480
21-60	2L:7525..25255318	l(2)00329
21-60	2L:7525..25255318	l(2)k09217	FBst0010865
21-60	2L:7525..25255318	l(2)k09903
21-60	2L:7525..25255318	l(2)k08625
21-60	2L:7525..25255318	l(2)rJ235
21-60	2L:7525..25255318	l(2)k11038
21-60	2L:7525..25255318	l(2)30l	FBst0000366
21-60	2L:7525..25255318	l(2)k11002
21-60	2L:7525..25255318	l(2)k08707
21-60	2L:7525..25255318	l(2)k14810
21-60	2L:7525..25255318	l(2)04548
21-60	2L:7525..25255318	l(2)k02501	FBst0313970
21-60	2L:7525..25255318	l(2)k09015a	2 stocks
21-60	2L:7525..25255318	l(2)k13215
21-60	2L:7525..25255318	l(2)k09033
21-60	2L:7525..25255318	l(2)k11502
21-60	2L:7525..25255318	l(2)s1864
21-60	2L:7525..25255318	l(2)k05636
21-60	2L:7525..25255318	l(2)k09619
21-60	2L:7525..25255318	l(2)s1976
21-60	2L:7525..25255318	l(2)k12004
21-60	2L:7525..25255318	moz
21-60	2L:7525..25255318	M(2)201
21-60	2L:7525..25255318	l(2)k06917	FBst0010649
21-60	2L:7525..25255318	l(2)k00503
21-60	2L:7525..25255318	l(2)k07526
21-60	2L:7525..25255318	l(2)k06106
21-60	2L:7525..25255318	lup-4
21-60	2L:7525..25255318	l(2)k07219
21-60	2L:7525..25255318	l(2)k07245	FBst0314033
21-60	2L:7525..25255318	l(2)k00313
21-60	2L:7525..25255318	fs(2)H47
21-60	2L:7525..25255318	l(2)02438
21-60	2L:7525..25255318	l(2)k06501
21-60	2L:7525..25255318	Tsc	FBst0002058
21-60	2L:7525..25255318	M(2)34d
21-60	2L:7525..25255318	l(2)k09502
21-60	2L:7525..25255318	l(2)148
21-60	2L:7525..25255318	l(2)k07020
21-60	2L:7525..25255318	l(2)k13525
21-60	2L:7525..25255318	M(2)34b
21-60	2L:7525..25255318	l(2)k13531
21-60	2L:7525..25255318	l(2)k11326
21-60	2L:7525..25255318	l(2)k16105	FBst0012187
21-60	2L:7525..25255318	l(2)k10237	FBst0314102
21-60	2L:7525..25255318	l(2)k15306
21-60	2L:7525..25255318	l(2)k11021
21-60	2L:7525..25255318	l(2)k12602
21-60	2L:7525..25255318	l(2)k09216
21-60	2L:7525..25255318	l(2)08685
21-60	2L:7525..25255318	l(2)k14817
21-60	2L:7525..25255318	l(2)M167
21-60	2L:7525..25255318	l(2)k09005
21-60	2L:7525..25255318	l(2)k13217	FBst0301769
21-60	2L:7525..25255318	l(2)s4989	FBst0314188
21-60	2L:7525..25255318	l(2)CA7	2 stocks
21-40	2L:7525..22677528	e(if)1
21-40	2L:7525..22677528	l(2)cl-L3	3 stocks
30D1-35B2	2L:9785848..14562769	Su(var)2-12
34C4-36A7	2L:13516105..16637042	l(2)SH2252
35A-35E	2L:14129306..16209133	l(2)PW27
35A3-35B1	2L:14260777..14463510	l(2)35Ab
35B1-35B1	2L:14364253..14463510	l(2)SH0905
35B1-35B1	2L:14364253..14463510	elA	7 stocks

*Insertions (cytology mapped)* [Export into hitlist]
35B-35B	2L:14364253..15063839	P{RS5r}10
35B-35B	2L:14364253..15063839	P{RS5}10
35B1-35B3	2L:14364253..14648531	P{PZ}05355a
35B1-35B1	2L:14364253..14463510	TI{TI}ppk[pHluorinSE-EC.mScarlet-I-C]
35B1-35B1	2L:14364253..14463510	TI{TI}ppk[pHluorinSE-EC.mCh-C]
35B1-35B1	2L:14364253..14463510	TI{TI}Pburs[attP]	FBst0084560
35B1-35B1	2L:14364253..14463510	TI{TI}ppk[sfGFP-EC1]
35B1-35B1	2L:14364253..14463510	Mi{?ET1}ppk[Δ5]
35B1-35B1	2L:14364253..14463510	TI{2A-GAL4}Pburs[2A-GAL4]	FBst0084682
35B1-35B1	2L:14364253..14463510	TI{TI}ppk[N-sfGFP]
35B1-35B1	2L:14364253..14463510	TI{2A-lexA::GAD}Pburs[2A-lexA]	FBst0084428
35B1-35B1	2L:14364253..14463510	TI{TI}ppk[WT-KI]
35B1-35B1	2L:14364253..14463510	TI{TI}ppk[C-sfGFP]
35B1-35B1	2L:14364253..14463510	TI{TI}ppk[sfGFP-EC2]
35B1-35B1	2L:14364253..14463510	TI{2A-EGFP}Pburs[CCT1165C]
35B1-35B1	2L:14364253..14463510	TI{TI}ppk[attP-KO]
35B1-35B1	2L:14364253..14463510	TI{TI}ppk[mCherry]
35B1-35B1	2L:14364253..14463510	Mi{?ET1}ppk[Δ16]
35B1-35B1	2L:14364253..14463510	TI{TI}ppk[spGFP11x3-EC.mCh-C]
35B1-35B1	2L:14364253..14463510	TI{TI}ppk[spGFP11x3-EC]
35B1-35B1	2L:14364253..14463510	TI{T-GEM.0}Pburs[Gal4]
35B1-35B1	2L:14364253..14463510	TI{TI}ppk[sfGFP.mCherry]

*Insertions (sequence mapped)* [Export into hitlist]
35B1	2L:14365596..14365596	PBac{PB}spel1[c04994]
35B1-35B1	2L:14367188..14367188	P{GawB}NP0650	FBst0302563
35A1	2L:14367201..14367201	P{SUPor-P}KG06763	FBst0014241
35B1	2L:14368856..14368918	PBac{WH}f07052
35B1	2L:14368857..14368857	PBac{WH}f07053b
35B1	2L:14370576..14370576	Mi{MIC}MI10527
35B1	2L:14375726..14375726	PBac{PB}c03201
35B1	2L:14377457..14377457	Mi{ET1}MB10310
35B1	2L:14378669..14378669	Mi{MIC}ppk[MI04968]	FBst0038075
35B1	2L:14383291..14383291	PBac{WH}f01473
35B1	2L:14385224..14385224	Mi{ET1}MB02775	FBst0023979
35B1	2L:14393727..14393727	PBac{PB}elB[c00589]
35B1	2L:14399637..14399637	Mi{MIC}elB[MI03746]	FBst0042961
35B1_r6	2L:14399637..14399637	Mi{Trojan-GAL4.0}elB[MI03746-TG4.0]	FBst0077739
35B1	2L:14399831..14399831	PBac{PB}elB[c01895]
35B1-35B1	2L:14399989..14399989	Mi{Hto-WP}elB[DRE]	FBst0056547
35B1	2L:14401371..14401371	PBac{WH}elB[f01298]
35B1	2L:14401382..14401382	PBac{PB}elB[c01007]
35B1_r5	2L:14406528..14407528	PBac{SAstopDsRed}LL00512	FBst0318752
35B1	2L:14408395..14408395	Mi{MIC}elB[MI01081]	FBst0060744
35B1	2L:14408811..14408811	PBac{PB}elB[c03049]
35B1	2L:14408814..14408814	PBac{WH}elB[f05651b]
35B1-35B1	2L:14409081..14409339	PBac{WH}elB[f05651a]
35B1	2L:14409489..14409489	Mi{MIC}elB[MI07088]	FBst0060920
35B1	2L:14409581..14409581	P{XP}d11070
35A1	2L:14409601..14409601	P{SUPor-P}KG00923
35A1-35A1	2L:14409608..14409608	P{EP}elB[EP2039]
35B1-35B1	2L:14409687..14409687	P{lacW}elB[k07706]
35B1	2L:14409711..14409711	P{XP}d00615
35B1	2L:14409711..14409711	P{XP}d02171
35A1-35A1	2L:14409778..14409778	P{EP}elB[EP965]
35B1-35B1	2L:14410497..14410497	P{GAL4}elB[GAL4]
35B1-35B1	2L:14415244..14415244	PBac{IT.GAL4}1139-G4	FBst0065470
35B1	2L:14416945..14416945	Mi{MIC}Pburs[MI11717]	FBst0056453
35B1	2L:14420478..14420478	Mi{MIC}MI09903
35B1	2L:14421095..14421095	PBac{RB}e02061
35B1	2L:14422147..14422147	P{EPgy2}EY22350	FBst0022553
35B1	2L:14423866..14423866	Mi{ET1}MB09859	FBst0027812
35B1	2L:14428286..14428286	PBac{PB}c02917a
35B1-35B1	2L:14434684..14434684	PBac{WH}f04754
35B1	2L:14436415..14436415	Mi{MIC}MI09764
35B1	2L:14437855..14437855	PBac{WH}f02447
35B1	2L:14439550..14439550	Mi{ET1}MB00690	FBst0022871
35B1	2L:14453858..14453858	Mi{MIC}MI05992
35B1	2L:14454944..14454944	PBac{WH}f02202
35B1	2L:14455716..14455716	PBac{WH}f04535

*Deleted segments (sequence mapped)* [Export into hitlist]
34E1--35B4	2L:13878181..14689337	Df(2L)ED791	FBst0313211
34E4--35B4	2L:13934848..14689337	Df(2L)ED793	2 stocks
35A3--35B2	2L:14300969..14470247	Df(2L)Exel6035	FBst0007518
35A4--35B1	2L:14334094..14383291	Df(2L)ppk1Aid
35B1--35B1	2L:14368856..14409711	Df(2L)ppk[ESB]	FBst0079622
35B1--35B1	2L:14368856..14409711	Df(2L)ppk1MirB
35B1--35B2	2L:14409711..14490657	Df(2L)Exel6036	FBst0007519
35B1--35B8	2L:14455715..14997588	Df(2L)Exel8033	FBst0007828

*Duplicated segments (sequence mapped)* [Export into hitlist]
35A4-35B1	2L:14325026..14422984	Dp(2;3)GV-CH321-58B19	FBst0090499
35B1-35B2	2L:14415749..14500630	Dp(2;3)GV-CH321-89L04	FBst0090640

*Deleted segments (cytology mapped)* [Export into hitlist]
34C1--35C1	2L:13428843..15092774	Df(2L)b87e25	3 stocks
34C1--35B4	2L:13428843..14728138	Df(2L)b88c25
34C1--35B2	2L:13428843..14562769	Df(2L)b84a7	FBst0300419
34C3--35B10	2L:13493916..15063839	Df(2L)b89e80a
34C3--35B1	2L:13493916..14463510	Df(2L)b84a2
34C4--35D2	2L:13516105..15515146	Df(2L)b80e4
34C4--35B7	2L:13516105..14976593	Df(2L)b89e88b
34C5--35D5	2L:13568163..15880296	Df(2L)b88c75
34D1--35D7	2L:13702163..15968241	Df(2L)b89e88a
34D1--35C2	2L:13702163..15152068	Df(2L)b88c58
34D1--35C1	2L:13702163..15092774	Df(2L)el88
34D1--35C1	2L:13702163..15092774	Df(2L)64j	2 stocks
34D2--35C1	2L:13833370..15092774	Df(2L)TE35BC-23
34D2--35C1	2L:13833370..15092774	Df(2L)TE35B-5
34D2--35B10	2L:13833370..15063839	Df(2L)b80k	FBst0300418
34D2--35B4	2L:13833370..14728138	Df(2L)b81l1
34D2--35B4	2L:13833370..14728138	Df(2L)el90
34D3--35C3	2L:13833380..15214582	Df(2L)b84h50
34D3--35C1	2L:13833380..15092774	Df(2L)fn30	2 stocks
34D3--35C1	2L:13833380..15092774	Df(2L)TE35BC-6
34D3--35B7	2L:13833380..14976593	Df(2L)b84a6
34D3--35B5	2L:13833380..14784679	Df(2L)fn31
34D3--35B4	2L:13833380..14728138	Df(2L)b84a3
34D3--35B4	2L:13833380..14728138	Df(2L)π1a1
34D3--35B2	2L:13833380..14562769	Df(2L)b84a4
34D3--35B2	2L:13833380..14562769	Df(2L)b81a1	2 stocks
34D3--35B2	2L:13833380..14562769	Df(2L)b84a1
34D3--35B2	2L:13833380..14562769	Df(2L)b84a5
34D3--35B2	2L:13833380..14562769	Df(2L)b84a8
34D4--35B10	2L:13833390..15063839	Df(2L)b89e80b
34D4--35B4	2L:13833390..14728138	Df(2L)GT5
34D4--35B2	2L:13833390..14562769	Df(2L)b81f2A
34E1--35C5	2L:13858652..15271253	Df(2L)el82f1
34E1--35C3	2L:13858652..15214582	Df(2L)Adh-nBR55
34E1--35C3	2L:13858652..15214582	Df(2L)el80i1
34E1--35B2	2L:13858652..14562769	Df(2L)TE35B-407
34E1--35B2	2L:13858652..14562769	Df(2L)A47
34E2--35B4	2L:13886484..14728138	Df(2L)fn7	2 stocks
34E3--35E1	2L:13914316..16041130	Df(2L)fn26
34E3--35D5	2L:13914316..15880296	Df(2L)el80f1	2 stocks
34E3--35C4	2L:13914316..15242917	Df(2L)A376
34E4--35C3	2L:13920065..15214582	Df(2L)noc11	2 stocks
34E4--35B10	2L:13920065..15063839	Df(2L)fn12
34E4--35B2	2L:13920065..14562769	Df(2L)TE35B-8
34E5--35C3	2L:13952277..15214582	Df(2L)A263	2 stocks
34F1--35D7	2L:14003469..15968241	Df(2L)A377
34F1--35D3	2L:14003469..15721189	Df(2L)Sco[rv23]	2 stocks
34F1--35B4	2L:14003469..14728138	Df(2L)osp141
34F1--35B4	2L:14003469..14728138	Df(2L)W
34F1--35B4	2L:14003469..14728138	Df(2L)el17
34F1--35B3	2L:14003469..14648531	Df(2L)TE35B-3
34F1--35B3	2L:14003469..14648531	Df(2L)Adh-nBR41
34F1--35B2	2L:14003469..14562769	Df(2L)GT4
34F1--35B2	2L:14003469..14562769	Df(2L)noc10	2 stocks
34F1--35B2	2L:14003469..14562769	Df(2L)TE35B-9
34F1--35B2	2L:14003469..14562769	Df(2L)TE35B-4
34F1--35B2	2L:14003469..14562769	Df(2L)noc20	2 stocks
34F2--35C4	2L:14031301..15242917	Df(2L)osp38	2 stocks
34F2--35C3	2L:14031301..15214582	Df(2L)A215
34F2--35C1	2L:14031301..15092774	Df(2L)TE35BC-29
34F2--35B4	2L:14031301..14728138	Df(2L)fn36
34F2--35B3	2L:14031301..14648531	Df(2L)el77	2 stocks
34F2--35B2	2L:14031301..14562769	Df(2L)noc13
34F3--35C5	2L:14059133..15271253	Df(2L)el20
34F3--35B2	2L:14059133..14562769	Df(2L)TE35B-15
34F4--35E1	2L:14082494..16041130	Df(2L)A246
34F4--35D7	2L:14082494..15968241	Df(2L)TE35B-2
34F4--35D5	2L:14082494..15880296	Df(2L)fn1	2 stocks
34F4--35C3	2L:14082494..15214582	Df(2L)fn5	2 stocks
34F5--35E1	2L:14110326..16041130	Df(2L)TE35D-24
34F5--35D2	2L:14110326..15515146	Df(2L)do1	2 stocks
34F5--35C3	2L:14110326..15214582	Df(2L)el15
34F5--35B10	2L:14110326..15063839	Df(2L)TE35BC-31	2 stocks
34F5--35B3	2L:14110326..14648531	Df(2L)A217	2 stocks
34F5--35B2	2L:14110326..14562769	Df(2L)el81i1	2 stocks
34F5--35B2	2L:14110326..14562769	Df(2L)TE35B-10
35A--35E	2L:14129306..16209133	Df(2L)l178
35A1--35C3	2L:14129306..15214582	Df(2L)A400	2 stocks
35A4--35E1	2L:14319263..16041130	Df(2L)el28
35A4--35D4	2L:14319263..15853531	Df(2L)TE35B-14
35A4--35C1	2L:14319263..15092774	Df(2L)fn15
35A4--35B10	2L:14319263..15063839	Df(2L)ARR1	FBst0025129
35A4--35B2	2L:14319263..14562769	Df(2L)el14
35A4--35B2	2L:14319263..14562769	Df(2L)TE35B-7
35A4--35B2	2L:14319263..14562769	Df(2L)fn2	2 stocks
35A4--35B2	2L:14319263..14562769	Df(2L)el16
35A4--35B2	2L:14319263..14562769	Df(2L)TE35B-12
35B1--36C2	2L:14364253..17214286	Df(2L)A446	2 stocks
35B1--35E1	2L:14364253..16041130	Df(2L)TE35BC-8	2 stocks
35B1--35D7	2L:14364253..15968241	Df(2L)n78l3
35B1--35D5	2L:14364253..15880296	Df(2L)TE35D-20
35B1--35D4	2L:14364253..15853531	Df(2L)fn27
35B1--35C5	2L:14364253..15271253	Df(2L)TE35B-1
35B--35C4	2L:14364253..15242917	Df(2L)l109
35B1--35C3	2L:14364253..15214582	Df(2L)nNxF1	2 stocks
35B1--35C1	2L:14364253..15092774	Df(2L)TE35B-6
35B1--35B10	2L:14364253..15063839	Df(2L)Sco[rv4]	2 stocks
35B1--35B4	2L:14364253..14728138	Df(2L)fn3	2 stocks
35B1--35B4	2L:14364253..14728138	Df(2L)A445
35B1--35B4	2L:14364253..14728138	Df(2L)TE35B-11
35B1--35B2	2L:14364253..14562769	Df(2L)A260	2 stocks
35B1--35B2	2L:14364253..14562769	Df(2L)TE35B-48
35B1--35B2	2L:14364253..14562769	Df(2L)A245	2 stocks
35B1--35B2	2L:14364253..14562769	Df(2L)Sco[rv10]	2 stocks
35B1--35B2	2L:14364253..14562769	Df(2L)el1
35B1--35B2	2L:14364253..14562769	Df(2L)osp144	2 stocks
35B1--35B2	2L:14364253..14562769	Df(2L)TE35B-50
35B1--35B2	2L:14364253..14562769	Df(2L)TE35B-54
35B1--2;[>35C3];42F1--3	2L:14364253..14463510	T(2;3)TE35B-2
35B1--2;[>35B4];80	2L:14364253..14463510	T(2;3)TE35B-2a
35B1--2;35E1--F1;35D2--7;[<35D]	2L:14364253..14463510	Df(2L)Sco[rv18]
?--35B	2L:14364253..14463510	Df(2L)el94
35B1;35B3;41;57A8-57A10	2L:14364253..14463510	Df(2L)A379
35B1--2;[>35C1];80--81	2L:14364253..14463510	T(2;3)TE35B-5
35B1;36A1--2;[<35D1];35E1--F1	2L:14364253..14463510	Df(2L)PA4

*Duplicated segments (cytology mapped)* [Export into hitlist]
30C--37B	2L:9589829..19085148	Dp(2;2)168
30C1--36D1	2L:9589829..17649720	Dp(2;2)167
30D1--35D2	2L:9785848..15515146	Dp(2;2)169
30D1--35B2	2L:9785848..14562769	Dp(2;2)165
32D3--35C1	2L:11093466..15092774	Dp(2;2)Adh2
33A--40B	2L:11680786..21929711	Dp(2;2;2)I
33B1--35C3	2L:11901328..15214582	Dp(2;2)GYL1
33B1--35C2	2L:11901328..15152068	Dp(2;2)GYL
34A--37E	2L:12778077..19531130	Dp(2;2)dp-b
34A--35C	2L:12778077..15271253	Dp(2;2)AZ
34A1--35C3	2L:12778077..15214582	Dp(2;2)GYL4
34A2--35C1	2L:12859087..15092774	Dp(2;2)NS
34B1--35B3	2L:13241341..14648531	Dp(2;2)Adh3
34D--35C	2L:13702163..15271253	Dp(2;2)MA2.2
34D1--35C3	2L:13702163..15214582	Dp(2;2)GYS	2 stocks
34D1--35B2	2L:13702163..14562769	Dp(2;2)GYSS
34D3--35B2	2L:13833380..14562769	Dp(2;2)b[81f1]	5 stocks
34F1--35D3	2L:14003469..15721189	Dp(2;1)Sco[rv23]	2 stocks

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
21A-58B	2L:7525..22128418	In(2LR)CA10
21D-36F	2L:464654..18684441	In(2L)CA11
21E-59C	2L:518419..23139064	In(2LR)434.37
21F-40F	2L:1086655..22677528	In(2L)DTD94
21F-57C	2L:1086655..21199299	In(2LR)Dem1-13
22A-59C	2L:1326938..23139064	In(2LR)RBR104
22A-40E	2L:1326938..22148236	In(2L)V11-3
22B4-36F10	2L:1852362..18677991	In(2L)88g42a
22C-36C	2L:2027809..17552485	In(2L)83b27
22C-35B	2L:2027809..15063839	In(2L)IE
22D-57A	2L:2132200..20683849	In(2LR)KB
22D-36C	2L:2132200..17552485	In(2L)81a2
22E-36F	2L:2298836..18684441	In(2L)SMG4
22F-60A	2L:2425050..23989883	In(2LR)JHI1
22F-58E	2L:2425050..22584651	In(2LR)A81414
22F-40B	2L:2425050..21929711	In(2L)Mg88
23B-53C	2L:2790738..16667220	In(2LR)Dem2-1
23B1-35D4	2L:2790738..15853531	In(2L)88g53
23E-40D	2L:3218267..22061076	In(2L)SMG7
24D-58B	2L:3912566..22128418	In(2LR)pc83
24D-56F	2L:3912566..20361757	In(2LR)JHI2
24E-36E	2L:4225490..18188234	In(2L)Mg84
26A-59D	2L:5831062..23434601	In(2LR)JHI4
26A-38D	2L:5831062..20687000	In(2L)JHI29
26-56F	2L:5831062..20361757	In(2LR)SD-YT186
26A-56D	2L:5831062..19570458	In(2LR)JHI3
26A-35F	2L:5831062..16411601	In(2L)JHI28
26A-35E	2L:5831062..16209133	In(2L)ID
26D-53E	2L:6384432..17039162	In(2LR)DA3
26D-51A	2L:6384432..14547366	In(2LR)B8
26F-59E	2L:6583041..23562485	In(2LR)Su(bw[D])131
27C-37F	2L:6839039..19673576	In(2L)Mg86
27D-51E	2L:6969878..15265242	In(2LR)Gla	138 stocks
27E-36D	2L:7069442..17817472	In(2L)IW19
28E-37E	2L:8060239..19531130	In(2L)RBR2
29E-35F	2L:8536705..16411601	In(2L)JHI49
29E-35C	2L:8536705..15271253	In(2L)JHI48
29F-35F	2L:8761615..16411601	In(2L)RBR40
30A-59E2	2L:9059864..23531731	In(2LR)bw[85f4]
30A-36B	2L:9059864..17093815	In(2L)JHI51
30A-36B	2L:9059864..17093815	In(2L)K36
30A-36A	2L:9059864..16765029	In(2L)K33
30B-39F	2L:9362424..21731512	In(2L)JHI55
30B-39E	2L:9362424..21684084	In(2L)JHI54
30B-38A	2L:9362424..20000958	In(2L)JHI53
30C-36D	2L:9589829..17817472	In(2L)JHI56
30E-59D	2L:9880190..23434601	In(2LR)30E;59D
30E-38F	2L:9880190..20966124	In(2L)RBR141
30E-37A	2L:9880190..18822138	In(2L)M
30F-39A	2L:9920730..21175048	In(2L)ZP4
30F-36D	2L:9920730..17817472	In(2L)T4
30F-36D	2L:9920730..17817472	In(2L)T
31B-38E	2L:10170694..20812419	In(2L)JHI59
31C-57E	2L:10280568..21549017	In(2LR)RBR116
31C-36D	2L:10280568..17817472	In(2L)JHI60
31F-36F	2L:10472970..18684441	In(2L)PS16
31F-35D	2L:10472970..15968241	In(2L)PS15
31F-51C	2L:10472970..14872152	In(2LR)PL
32A-36E	2L:10557962..18188234	In(2L)IC
32B-40D	2L:10774976..22061076	In(2L)JHI61
32C-36C	2L:10929251..17552485	In(2L)JHI62
32D-36A	2L:11021966..16765029	In(2L)JHI65
32E-36A	2L:11169361..16765029	In(2L)RBR68-2
33A-56D	2L:11680786..19570458	In(2LR)434.38
33A-37D	2L:11680786..19427708	In(2L)ZP6
33A-37B	2L:11680786..19085148	In(2L)AWI11
33B-60B	2L:11901328..24156611	In(2LR)JHI6
33B-39A	2L:11901328..21175048	In(2L)K24
33B-36E	2L:11901328..18188234	In(2L)Dem2-1
33B-35F	2L:11901328..16411601	In(2L)AWI12
33E-39D	2L:12313075..21512721	In(2L)Dem3-5
33E-38D	2L:12313075..20687000	In(2L)JHI66
34A-59E	2L:12778077..23562485	In(2LR)Dem1-14
34A-58F	2L:12778077..22675646	In(2LR)E1
34A-39A	2L:12778077..21175048	In(2L)JHI68
34A-36A	2L:12778077..16765029	In(2L)AWI13
34A-35B	2L:12778077..15063839	In(2L)JHI67
34B1-35D1	2L:13241341..15333767	In(2L)Sco[rv24]
34C-59C	2L:13428843..23139064	In(2LR)34C;59C
34C-39E	2L:13428843..21684084	In(2L)IF
34D-38F	2L:13702163..20966124	In(2L)JHI69
34D4-40F	2L:13833390..22677528	In(2L)b[91l9]
34D4-40E	2L:13833390..22148236	In(2L)b89e100
34E-60F	2L:13858652..25255318	In(2LR)s1
34E-38E	2L:13858652..20812419	In(2L)JHI70
35A-40D	2L:14129306..22061076	In(2L)JHI71
35-39	2L:14129306..21731512	In(2L)SD-YT236
35B-58E	2L:14364253..22584651	In(2LR)RBR120
35B-57F	2L:14364253..21758515	In(2LR)SMG9
35B-39F	2L:14364253..21731512	In(2L)35B-39F
35B-39E	2L:14364253..21684084	In(2L)AWI14
35B1-40	2L:14364253..15063839	In(2L)TE35B-3
35B1-41	2L:14364253..15063839	In(2LR)TE35B-6
35B1-35B2-42F1-42F3	2L:14364253..14463510	In(2LR)TE35B-14
35B1-35B2-h35-h38L	2L:14364253..14463510	In(2L)TE35B-56
35B1-35B2-h35-h46	2L:14364253..14463510	In(2LR)TE35B-50
35B1-35B2-38C1-38C2	2L:14364253..14463510	In(2L)TE35B-27
35B1-35B2-h35-h38L	2L:14364253..14463510	In(2L)TE35B-11
35B1-35B2-h35-h38L	2L:14364253..14463510	In(2L)TE35B-53
35B1-35B2-43A1-43A3	2L:14364253..14463510	In(2LR)TE35B-4
35B1-35B2-h35-h38L	2L:14364253..14463510	In(2L)TE35B-16
35B1-35B2-40	2L:14364253..14463510	In(2L)TE35B-9
35B-40-41	2L:14364253..14463510	In(2)TE35B-1
35B1-35B2-44D1-44D8	2L:14364253..14463510	In(2LR)TE35B-15
35B-42F1-42F3	2L:14364253..14463510	In(2LR)TE35B-301
35B1-35B2-36C3-36C11	2L:14364253..14463510	In(2L)TE35B-55
35B1-35B2-40	2L:14364253..14463510	In(2L)TE35B-63
35B1-35B2-36D3	2L:14364253..14463510	In(2L)noc[2]
35B1-35B2-h38R-41A3	2L:14364253..14463510	In(2LR)DTD43

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
21A-59D	2L:7525..23434601	T(Y;2)JL12
21A-57F	2L:7525..21758515	T(Y;2)JL11
21B-97C	2L:22222..26733804	T(2;3)ML505
21B-74C	2L:22222..17482659	T(2;3)H20
21C5-97D3	2L:456230..26875850	T(2;3)L141-51
22E-91F	2L:2298836..19261019	T(2;3)V12-1-41
22E-89D	2L:2298836..16736155	T(2;3)T1-19
22E-89B9	2L:2298836..16273584	T(2;3)sbd[106]
23C-75C	2L:2875793..18477235	T(2;3)Mg166
23D-70D	2L:3066731..14450541	T(2;3)432.12
24D-97D	2L:3912566..27054991	T(2;3)C317
24D-92A	2L:3912566..19695282	T(2;3)smg
24D4-78C	2L:4024161..21387543	T(2;3)H7
24F-96E	2L:4397911..25712016	T(2;3)L141-49
24F-74B	2L:4397911..17429272	T(2;3)Mg171
25B-92C	2L:4842677..20096867	T(2;3)Dem1-16
25B-71C	2L:4842677..15419138	T(2;3)20c
25C-100F	2L:5006015..32068446	T(2;3)3.29	FBst0300944
26A-89E3	2L:5831062..16902970	T(2;3)iab9[1645]
26B-98F	2L:5980165..29184631	T(2;3)Mg192
26B-71C	2L:5980165..15419138	T(2;3)Mg177
27A-98C	2L:6687692..28383802	T(2;3)Dem1-17
27A-70F	2L:6687692..14827714	T(2;3)pc60
27B-92C	2L:6746144..20096867	T(2;3)SMG41
27E-92B1	2L:7069442..19766967	T(2;3)ML490
28C-95F	2L:7644957..24380882	T(2;3)Mg180
28D-101A	2L:7820557..32068446	T(2;4)DTD37
28D-97E	2L:7820557..27264826	T(2;3)DTD132
28E-90C	2L:8060239..17916873	T(2;3)ETD2.4
28F-94A	2L:8168305..22474684	T(2;3)Mg184
29F-94B	2L:8761615..22666854	T(2;3)AWT1
30-96	2L:9059864..26106891	T(2;3)Y1
30A-60F	2L:9059864..25255318	T(F2L;F2R)14
31B-94D	2L:10170694..23114712	T(2;3)Mg176
32C-77B	2L:10929251..20386379	T(2;3)Mg172
32E-96F	2L:11169361..26106891	T(2;3)ML472
32E-89B	2L:11169361..16576178	T(2;3)DTD122
33A-51E	2L:11680786..15265242	T(F2L;F2R)10
33B-99F	2L:11901328..30597427	T(2;3)RBR77
33B-79F	2L:11901328..22718905	T(2;3)V13-1b
33B-94A	2L:11901328..22474684	T(2;3)W[rvX2]
33B2-101E	2L:11931642..32068446	T(2;4)b88g26
34A-79B	2L:12778077..22099823	T(2;3)Mg179
34C-96F	2L:13428843..26106891	T(2;3)JHT1
34C-78E	2L:13428843..21748736	T(2;3)DTD85
34D-75F	2L:13702163..19164830	T(2;3)C124
35A-90F	2L:14129306..18268610	T(2;3)V9-10
35A-71C	2L:14129306..15419138	T(2;3)Mg188
35B-96E	2L:14364253..25712016	T(2;3)V13-1
35B-35F;39-41;75C	2L:14364253..15063839	T(2;3)T1-12
45F;51E;35B-45F;51E;35B	2L:14364253..15063839	Tp(2;2)RBR66
35B1-81	2L:14364253..15063839	T(2;3)TE35B-209
35B;48E;97F;101-35B;48E;97F;101	2L:14364253..15063839	T(2;3;4)C16
35B-101	2L:14364253..15063839	T(2;4)C24
35B;h37;51C;59C4;66D4-66D5;80;86D	2L:14364253..15063839	T(2;3)lt[X1]
35B1--2;[>101]	2L:14364253..14463510	T(2;4)TE35B-50
35B1-35D2-35D5	2L:14364253..14463510	Tp(2;2)TE35B-54
35B1-35B2-94A4-94A5	2L:14364253..14463510	T(2;3)TE35B-58
35B1-35B2-81	2L:14364253..14463510	T(2;3)TE35B-4
35B1;35B3;35C1;35D1-35D2	2L:14364253..14463510	Tp(2;2)Sco
35B-80-81	2L:14364253..14463510	T(2;3)L141-15
35B1-35B2-101F	2L:14364253..14463510	T(2;4)TE35B-101
35B1-35B2-70B1-70B2	2L:14364253..14463510	T(2;3)TE35B-25
35B1-35B2-86A1-86A2	2L:14364253..14463510	T(2;3)TE35B-3
35B1-35B2-80-81	2L:14364253..14463510	T(2;3)TE35B-7
35B1-35B2-90C3-90C6	2L:14364253..14463510	T(2;3)TE35B-28
35B-h47-h58	2L:14364253..14463510	T(2;3)6r14
35B-87F1-87F2	2L:14364253..14463510	T(2;3)pc90
35B-80-81	2L:14364253..14463510	T(2;3)L141-23