FlyBase: FeatureMapper

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Developmental Dysregulation and Cancer

Kathy Matthews BDSC Endowment

Using AI to get FlyBase data

FlyBase in AWS Open Data

FB2026_03 , released September 17, 2026

Tools
Downloads
Links
Community
About
Help

Developmental Dysregulation and Cancer

Kathy Matthews BDSC Endowment

Using AI to get FlyBase data

FlyBase in AWS Open Data

FB2026_03 , released September 17, 2026

FeatureMapper Query

Feature Mapper supports D. melanogaster. Mapping results can be exported to a HitList or downloaded as GFF.

Mapping Options

Reference Landmark(s) or Region(s):

Feature Mapper help

Region type to map:

Range:

Kb

Include overlapping (not fully enclosed within query region) features

Group output features by type

Map Features:

Gene Models check all

Gene

mRNA (transcript)

exon

5′ UTR

3′ UTR

tRNA

miRNA

snRNA

snoRNA

CDS (polypeptide)

Natural TE

Aligned Evidence check all

cDNA

ESTs

RNA Editing Sites

RNA-seq Exon Junctions

Peptide Atlas peptides

Microarray Features check all

Affymetrix v1

Affymetrix v2

Noncoding Features check all

Transcriptional Regulatory Regions (REDfly)

Insulators (modENCODE, class I)

Insulators (modENCODE, class II)

TFBS (EMSA, footprinting)

Putative PREs (modENCODE)

ChIP (whole embryo) - TF HOT spot analysis

ChIP (whole embryo) - zinc finger TFs

ChIP (whole embryo) - homeodomain TFs

ChIP (whole embryo) - helix-loop-helix TFs

ChIP (whole embryo) - BTB/POZ TFs

ChIP (mesoderm) - various TFs

ChIP (whole embryo) - other TFs

Origins of replication (modENCODE)

ChIP (mesoderm) - His3 modifications

Putative Brain Enhancers (Janelia GAL4 lines)

Putative Enhancers (Vienna Tile GAL4 lines)

Mapped Mutations check all

Transgene insertion sites

Point Mutation

Sequence Variant

Uncharacterized Change in Sequence

Aberration Junction

Complex Substitution

Indels

Rescue Fragment

RNAi Reagents and Data check all

DGRC-1 amplicons

DGRC-2 oligos

DRSC RNAi amplicons

VDRC RNAi amplicons

TRiP RNAi amplicons

BKNA RNAi amplicons

HFA RNAi amplicons

NIG-Fly RNAi amplicons

version FB2026_03, released September 17, 2026

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