Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
40F6-40F6	2L:22239183..22239713	lncRNA:CR43765
40F6-40F6	2L:22239916..22246988	Nubpl	9 stocks
40F6-40F6	2L:22247111..22247875	RpL21	6 stocks
40F6-40F7	2L:22249876..22258260	Tif-IA	9 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
21-60	2L:7525..25255318	l(2)k13825
21-60	2L:7525..25255318	l(2)k14403
21-60	2L:7525..25255318	l(2)k07526
21-60	2L:7525..25255318	l(2)k06408	FBst0010623
21-60	2L:7525..25255318	l(2)k03901
21-60	2L:7525..25255318	l(2)04548
21-60	2L:7525..25255318	M(2)201
21-60	2L:7525..25255318	l(2)k11021
21-60	2L:7525..25255318	l(2)k07245	FBst0314033
21-60	2L:7525..25255318	l(2)k04810
21-60	2L:7525..25255318	l(2)k16616	FBst0301923
21-60	2L:7525..25255318	l(2)k02501	FBst0313970
21-60	2L:7525..25255318	l(2)k16904	FBst0301950
21-60	2L:7525..25255318	l(2)k00313
21-60	2L:7525..25255318	l(2)k13215
21-60	2L:7525..25255318	Tsc	FBst0002058
21-60	2L:7525..25255318	l(2)k08401a
21-60	2L:7525..25255318	l(2)k14316	FBst0301828
21-60	2L:7525..25255318	l(2)k02615
21-60	2L:7525..25255318	l(2)k08306
21-60	2L:7525..25255318	l(2)k14810
21-60	2L:7525..25255318	l(2)k15801
21-60	2L:7525..25255318	l(2)k09903
21-60	2L:7525..25255318	l(2)k05510
21-60	2L:7525..25255318	tu-47
21-60	2L:7525..25255318	l(2)01482	FBst0011062
21-60	2L:7525..25255318	l(2)k10209	FBst0010353
21-60	2L:7525..25255318	l(2)k02705
21-60	2L:7525..25255318	l(2)k17039
21-60	2L:7525..25255318	l(2)k15211
21-60	2L:7525..25255318	l(2)k14817
21-60	2L:7525..25255318	l(2)k00607	FBst0301118
21-60	2L:7525..25255318	su(Bar)2
21-60	2L:7525..25255318	l(2)08685
21-60	2L:7525..25255318	l(2)k10237	FBst0314102
21-60	2L:7525..25255318	fs(2)261404
21-60	2L:7525..25255318	Su(var)2-S29
21-60	2L:7525..25255318	l(2)k08625
21-60	2L:7525..25255318	l(2)k09619
21-60	2L:7525..25255318	l(2)k13217	FBst0301769
21-60	2L:7525..25255318	l(2)k09005
21-60	2L:7525..25255318	ifm(2)RU6
21-60	2L:7525..25255318	l(2)03845
21-60	2L:7525..25255318	moz
21-60	2L:7525..25255318	l(2)k17003
21-60	2L:7525..25255318	l(2)05315
21-60	2L:7525..25255318	ifm(2)RU7
21-60	2L:7525..25255318	l(2)30l	FBst0000366
21-60	2L:7525..25255318	l(2)k07332	FBst0010669
21-60	2L:7525..25255318	l(2)k11502
21-60	2L:7525..25255318	l(2)k06712	FBst0004395
21-60	2L:7525..25255318	ultB
21-60	2L:7525..25255318	l(2)k08707
21-60	2L:7525..25255318	l(2)s4989	FBst0314188
21-60	2L:7525..25255318	l(2)k09303	FBst0010874
21-60	2L:7525..25255318	l(2)8bb
21-60	2L:7525..25255318	l(2)k15819
21-60	2L:7525..25255318	lup-4
21-60	2L:7525..25255318	l(2)k04512
21-60	2L:7525..25255318	l(2)k06106
21-60	2L:7525..25255318	fs(2)261505
21-60	2L:7525..25255318	ifm(2)RU8
21-60	2L:7525..25255318	l(2)k15306
21-60	2L:7525..25255318	M(2)34k
21-60	2L:7525..25255318	l(2)k11537
21-60	2L:7525..25255318	fs(2)H47
21-60	2L:7525..25255318	l(2)CA7	2 stocks
21-60	2L:7525..25255318	l(2)k13914
21-60	2L:7525..25255318	l(2)rJ235
21-60	2L:7525..25255318	E(var)2-88
21-60	2L:7525..25255318	l(2)02438
21-60	2L:7525..25255318	l(2)k02113
21-60	2L:7525..25255318	l(2)k11702
21-60	2L:7525..25255318	l(2)06253	FBst0011480
21-60	2L:7525..25255318	Su(var)2-24
21-60	2L:7525..25255318	l(2)148
21-60	2L:7525..25255318	l(2)05337
21-60	2L:7525..25255318	l(2)k08136
21-60	2L:7525..25255318	l(2)s1864
21-60	2L:7525..25255318	l(2)k12602
21-60	2L:7525..25255318	M(2)33d
21-60	2L:7525..25255318	l(2)k16105	FBst0012187
21-60	2L:7525..25255318	l(2)k06917	FBst0010649
21-60	2L:7525..25255318	l(2)k09033
21-60	2L:7525..25255318	l(2)k00503
21-60	2L:7525..25255318	l(2)k09502
21-60	2L:7525..25255318	l(2)k07020
21-60	2L:7525..25255318	l(2)s1976
21-60	2L:7525..25255318	l(2)k11038
21-60	2L:7525..25255318	l(2)k08807	FBst0004396
21-60	2L:7525..25255318	l(2)k09107	FBst0010860
21-60	2L:7525..25255318	l(2)k10816	FBst0314113
21-60	2L:7525..25255318	l(2)k06501
21-60	2L:7525..25255318	l(2)k09217	FBst0010865
21-60	2L:7525..25255318	l(2)02321	FBst0011183
21-60	2L:7525..25255318	l(2)k09216
21-60	2L:7525..25255318	l(2)k12004
21-60	2L:7525..25255318	l(2)k09015a	2 stocks
21-60	2L:7525..25255318	l(2)k05636
21-60	2L:7525..25255318	fs(2)80
21-60	2L:7525..25255318	l(2)k00312
21-60	2L:7525..25255318	l(2)k13525
21-60	2L:7525..25255318	l(2)k16716
21-60	2L:7525..25255318	l(2)s3997
21-60	2L:7525..25255318	l(2)10206
21-60	2L:7525..25255318	l(2)k13531
21-60	2L:7525..25255318	l(2)k11002
21-60	2L:7525..25255318	l(2)Su(Sp)
21-60	2L:7525..25255318	ultA
21-60	2L:7525..25255318	l(2)k07160
21-60	2L:7525..25255318	l(2)M167
21-60	2L:7525..25255318	l(2)k07219
21-60	2L:7525..25255318	l(2)94
21-60	2L:7525..25255318	l(2)k09624	FBst0314085
21-60	2L:7525..25255318	l(2)k16514
21-60	2L:7525..25255318	l(2)k08139
21-60	2L:7525..25255318	l(2)k077
21-60	2L:7525..25255318	l(2)00329
21-60	2L:7525..25255318	M(2)34b
21-60	2L:7525..25255318	l(2)M65
21-60	2L:7525..25255318	l(2)k11326
21-60	2L:7525..25255318	l(2)k12702
21-60	2L:7525..25255318	l(2)09639
21-60	2L:7525..25255318	dud
21-60	2L:7525..25255318	l(2)k06020
21-60	2L:7525..25255318	l(2)k07525
21-60	2L:7525..25255318	l(2)03728
21-60	2L:7525..25255318	l(2)k04207
21-60	2L:7525..25255318	M(2)34d
21-60	2L:7525..25255318	l(2)k09316
21-60	2L:7525..25255318	l(2)k14039
21-60	2L:7525..25255318	l(2)32e
21-40	2L:7525..22677528	l(2)cl-L3	3 stocks
21-40	2L:7525..22677528	e(if)1
40-40	2L:21731513..22677528	Mst40
40F-60B	2L:22148237..24156611	Pla
40F-40F	2L:22148237..22677528	Rev

*Insertions (cytology mapped)* [Export into hitlist]
39E-40F	2L:21512722..22677528	P{wA[R]}tsh[4-3]	2 stocks
40A-40F	2L:21731513..22677528	P{enH+Hox.A}16A
40F6-40F7	2L:22235397..22677528	TI{TI}Tif-IA[V5.miGFPi]
40F6-40F6	2L:22235397..22252828	P{GSV7}GS22602
40F6-40F6	2L:22235397..22252828	Mi{DR-white.3xP3-DsRed}Nubpl[MI00127-DR-white]

*Insertions (sequence mapped)* [Export into hitlist]
40F6-40F6	2L:22237518..22237518	PBac{PB}c04532
40F6-40F6	2L:22237518..22237518	PBac{PB}c04540
40F6-40F6	2L:22237518..22237518	PBac{PB}c01998
40F6-40F6	2L:22237518..22237518	PBac{PB}c04632
40F6-40F6	2L:22237518..22237518	PBac{PB}c03864
40F6-40F6	2L:22237518..22237518	PBac{PB}c01934
40F6-40F6	2L:22237518..22237518	PBac{PB}c04705
61F1	2L:22237518..22237518	PBac{PB}c05954
40F6-40F6	2L:22237518..22237518	PBac{PB}c05900
40F6-40F6	2L:22237518..22237518	PBac{PB}c07187
40F6-40F6	2L:22237519..22237519	PBac{PB}c04233
40F6-40F6	2L:22237519..22237519	PBac{PB}c05671
40F6-40F6	2L:22237519..22237519	PBac{PB}c02633
40F6-40F6	2L:22237519..22237519	PBac{PB}c02575
40F6-40F6	2L:22237519..22237519	PBac{PB}c02158
40F6-40F6	2L:22237519..22237519	PBac{PB}c06369
40F6-40F6	2L:22237519..22237519	PBac{PB}c05858
40F6-40F6	2L:22237519..22237519	PBac{PB}c02639
40F6-40F6	2L:22237519..22237519	PBac{PB}c05010
40F6-40F6	2L:22237519..22237519	PBac{PB}c06678
40F6-40F6	2L:22237519..22237519	PBac{PB}c05996
40F6-40F6	2L:22237519..22237519	PBac{PB}c04405
40F6-40F6	2L:22237519..22237519	PBac{PB}c05264
40F6-40F6	2L:22237519..22237519	PBac{PB}c04209
40F6-40F6	2L:22237519..22237519	PBac{PB}c04415
40F6-40F6	2L:22237519..22237519	PBac{PB}c04853
40F5	2L:22237519..22237519	PBac{PB}c02466
40F6-40F6	2L:22237519..22237519	PBac{PB}c02000
40F6-40F6	2L:22237519..22237519	PBac{PB}c04854
40F6-40F6	2L:22237519..22237519	PBac{PB}c02655
40F6-40F6	2L:22237519..22237519	PBac{PB}c05809
40F6-40F6	2L:22237519..22237519	PBac{PB}c04863
40F6-40F6	2L:22237519..22237519	PBac{PB}c04526
40F6-40F6	2L:22237519..22237519	PBac{PB}c04131
40F5	2L:22237519..22237519	PBac{PB}c02134[c02134]
96F10	2L:22237519..22237519	PBac{PB}c06717
40F6-40F6	2L:22237519..22237519	PBac{PB}c04409
40F6-40F6	2L:22237519..22237519	PBac{PB}c05918
40F6-40F6	2L:22237519..22237519	PBac{PB}c04116
40F6-40F6	2L:22237519..22237519	PBac{PB}c04534
40F6-40F6	2L:22237519..22237519	PBac{PB}c03109
40F6-40F6	2L:22237519..22237519	PBac{PB}c04832
40F6-40F6	2L:22237519..22237519	PBac{PB}c06315
40F6-40F6	2L:22237519..22237519	PBac{PB}c04674
40F6-40F6	2L:22237519..22237519	PBac{PB}c04612
40F6-40F6	2L:22237519..22237519	PBac{PB}c04180
40F6-40F6	2L:22237519..22237519	PBac{PB}c03594
88E5	2L:22237520..22237520	PBac{PB}c02450
40F6-40F6	2L:22237521..22237521	PBac{PB}c03660
40F6-40F6	2L:22237557..22237739	PBac{PB}c05358
40F6-40F6	2L:22237557..22237712	PBac{PB}c03241
40F6-40F6	2L:22237568..22237667	PBac{PB}c05956
40F6-40F6	2L:22237570..22237570	PBac{PB}c04782
40F6-40F6	2L:22237571..22237571	PBac{PB}c05860
40F6-40F6	2L:22237571..22237571	PBac{PB}c02774
40F6-40F6	2L:22237578..22237677	PBac{PB}c05202
91D5	2L:22237578..22237677	PBac{PB}c04486
40F6-40F6	2L:22237579..22237739	PBac{PB}c04796
40F6-40F6	2L:22237579..22237739	PBac{PB}c03337
40F6-40F6	2L:22237592..22237691	PBac{PB}c05684
40F6-40F6	2L:22237599..22237698	PBac{PB}c02383
40D2	2L:22239540..22239540	P{SUPor-P}KG03844	FBst0013349
40F6_r5	2L:22240656..22240656	PBac{SAstopDsRed}LL01437	FBst0319006
40F6	2L:22245311..22245311	Mi{MIC}Nubpl[MI00127]	FBst0030628
40F6_r5	2L:22248723..22248723	PBac{SAstopDsRed}LL03926	FBst0319763
40F6_r5	2L:22250061..22250061	PBac{SAstopDsRed}LL00623	FBst0318767
40F6	2L:22250141..22250141	PBac{WH}Tif-IA[f03212]	FBst0085213
40D3	2L:22251289..22251289	P{SUPor-P}Tif-IA[KG06857]	FBst0014507

*Deleted segments (sequence mapped)* [Export into hitlist]
38A6--40B1	2L:19795851..22247111	Df(2L)TW161	3 stocks
40F6-	2L:22247875..22981816	Df(2L)lt109	FBst0026782

*Duplicated segments (sequence mapped)* [Export into hitlist]
40F2-40F7	2L:22180526..22266855	Dp(2;3)GV-CH321-30O24	FBst0090129

*Deleted segments (cytology mapped)* [Export into hitlist]
36D--40F	2L:17552486..22677528	Df(2L)b10-4
39A--40F	2L:20966125..22677528	Df(2L)305
39D--40F	2L:21328899..22677528	Df(2L)tsh7
40A--40F	2L:21731513..22677528	Df(2L)SD-5-R57
40--40	2L:21731513..22677528	Df(2L)PR7F

*Duplicated segments (cytology mapped)* [Export into hitlist]
39C2--40F	2L:21300764..22677528	Dp(2;Y)H1	FBst0305566
39E3--40F	2L:21592350..22677528	Dp(2;Y)H2	2 stocks
40B2--40F	2L:21871824..22677528	Dp(2;Y)H3

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
21E-59C	2L:518419..23139064	In(2LR)434.37
21F-40F	2L:1086655..22677528	In(2L)DTD94
22A-59C	2L:1326938..23139064	In(2LR)RBR104
22F-60A	2L:2425050..23989883	In(2LR)JHI1
22F-58E	2L:2425050..22584651	In(2LR)A81414
26A-59D	2L:5831062..23434601	In(2LR)JHI4
26F-59E	2L:6583041..23562485	In(2LR)Su(bw[D])131
30A-59E2	2L:9059864..23531731	In(2LR)bw[85f4]
30E-59D	2L:9880190..23434601	In(2LR)30E;59D
33B-60B	2L:11901328..24156611	In(2LR)JHI6
34A-59E	2L:12778077..23562485	In(2LR)Dem1-14
34A-58F	2L:12778077..22675646	In(2LR)E1
34C-59C	2L:13428843..23139064	In(2LR)34C;59C
34D4-40F	2L:13833390..22677528	In(2L)b[91l9]
34E-60F	2L:13858652..25255318	In(2LR)s1
35B-58E	2L:14364253..22584651	In(2LR)RBR120
36E-59D	2L:17817473..23434601	In(2LR)B7
38B-59D	2L:20000959..23434601	In(2LR)38B;59D
38F-40F	2L:20812420..22677528	In(2L)M1
39E-60E	2L:21512722..25017640	In(2LR)Mg101
40F-59E	2L:22148237..23562485	In(2LR)bw[V32g]	3 stocks
40F;51F;55E;57E;59E1-59E2	2L:22148237..22677528	In(2LR)bw[R3]

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
21A-59D	2L:7525..23434601	T(Y;2)JL12
21B-97C	2L:22222..26733804	T(2;3)ML505
21C5-97D3	2L:456230..26875850	T(2;3)L141-51
24D-97D	2L:3912566..27054991	T(2;3)C317
24F-96E	2L:4397911..25712016	T(2;3)L141-49
25C-100F	2L:5006015..32068446	T(2;3)3.29	FBst0300944
26B-98F	2L:5980165..29184631	T(2;3)Mg192
27A-98C	2L:6687692..28383802	T(2;3)Dem1-17
28C-95F	2L:7644957..24380882	T(2;3)Mg180
28D-101A	2L:7820557..32068446	T(2;4)DTD37
28D-97E	2L:7820557..27264826	T(2;3)DTD132
28F-94A	2L:8168305..22474684	T(2;3)Mg184
29F-94B	2L:8761615..22666854	T(2;3)AWT1
30-96	2L:9059864..26106891	T(2;3)Y1
30A-60F	2L:9059864..25255318	T(F2L;F2R)14
31B-94D	2L:10170694..23114712	T(2;3)Mg176
32E-96F	2L:11169361..26106891	T(2;3)ML472
33B-99F	2L:11901328..30597427	T(2;3)RBR77
33B-79F	2L:11901328..22718905	T(2;3)V13-1b
33B-94A	2L:11901328..22474684	T(2;3)W[rvX2]
33B2-101E	2L:11931642..32068446	T(2;4)b88g26
34C-96F	2L:13428843..26106891	T(2;3)JHT1
35B-96E	2L:14364253..25712016	T(2;3)V13-1
35D-79F	2L:15271254..22718905	T(2;3)L141-4
37B-60F	2L:18822139..25255318	T(F2L;F2R)31
40-99B	2L:21731513..29775722	T(2;3)pc32
40-97F	2L:21731513..27434247	T(2;3)lt[m100]
40-96A	2L:21731513..24840518	T(2;3)Mg23
40-95B	2L:21731513..23812801	T(2;3)445.3-4
40A-95A	2L:21731513..23714950	T(2;3)G50-4
40F;75A-75B;89;94	2L:22148237..22677528	T(2;3)I805
40F-41A;57C7;70D-70E;79F	2L:22148237..22677528	T(2;3)Pu