Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
42E4-42E4,42E-42E	2R:6992676..7004259	Tsp42Ea	8 stocks
42E4-42E4	2R:6992681..6994306	CG30159	9 stocks
42E4-42E4,42E-42E	2R:6998848..6999848	Tsp42Eb	FBst1088495
42E4-42E4	2R:7000154..7001696	CR42785
42E4-42E5	2R:7005157..7006136	CG30160	FBst1088878

*Genes (mapped, but not to the sequence)* [Export into hitlist]
41-60	2R:4460915..25255318	l(2)cl-R11	3 stocks
42B3-43E18	2R:6651936..7861513	rambl
42B4-42E7	2R:6651946..7078091	eK6
42C1-43F8	2R:6651966..7964477	mat(2)twg
42C7-43E14	2R:6725808..7756729	crib	2 stocks
42E-43A	2R:6908323..7333730	l(2)SH1519
42E-43A	2R:6908323..7333730	l(2)SH1233
42E1-42E4	2R:6908323..7005769	l(2)SH1513
42E3-42E4	2R:6991914..7005769	l(2)k04909b	FBst0314275
42E4-42E7	2R:6991924..7078091	anon-42Ea

*Insertions (cytology mapped)* [Export into hitlist]
41--60	2R:4460915..25255318	P{Rac1[+t3.6]}1.7.2	FBst0006683
42-42	2R:5802900..7180673	P{lacW}k08247b
42E-42E	2R:6908323..7078091	P{lacW}k07431a
42E-42E	2R:6908323..7078091	P{ry1}R305
42E-42E	2R:6908323..7078091	P{ry1}R305.1
42E1-42E5	2R:6908323..7048835	P{A92}A2
42E3-42E6	2R:6991914..7051974	P{lacW}k16003
42E3-42E4	2R:6991914..7005769	P{lacW}vimar[k10203b]
42E3-42E4	2R:6991914..7005769	P{lacW}vimar[k16707]	FBst0301929
42E3-42E4	2R:6991914..7005769	P{lacW}k05635b
42E4-42E4	2R:6991924..7005769	P{GSV1}C109[C109]
42E4-42E4	2R:6991924..7005769	P{RS5r}5-HA-1036
42E4-42E4	2R:6991924..7005769	P{RS3r}CB-5728-3

*Insertions (sequence mapped)* [Export into hitlist]
42E4	2R:6992643..6992643	P{XP}d04402
42E4	2R:6992643..6992643	P{XP}d06716
42E4	2R:6992645..6992645	P{RS5}5-HA-1036	FBst0327066
51A4-51A4	2R:6992653..6992653	P{EP}EP2210
42E4	2R:6992658..6992658	P{EPgy2}EY03036
42E4	2R:6992665..6992665	P{XP}d09849
42E4	2R:6992665..6992665	P{RS3}CB-5728-3	FBst0326332
42E4-42E4	2R:6992673..6992673	P{GawB}NP0655	FBst0315008
42E4	2R:6992690..6992690	P{XP}Tsp42Ea[d10698]
42E4	2R:6992838..6992838	P{XP}Tsp42Ea[d07337]
42E4-42E4	2R:6992839..6992839	P{GawB}Tsp42Ea[NP1176]	FBst0315292
42E4-42E4	2R:6992848..6992848	P{GawB}Tsp42Ea[NP0035]	FBst0302369
42E4-42E4	2R:6992938..6992938	P{wHy}Tsp42Ea[DG07807]
42E4	2R:6992938..6992938	P{GSV6}GS12527	FBst0322695
42D5	2R:6992938..6992938	P{SUPor-P}Tsp42Ea[KG05090]	FBst0013628
42E4	2R:6993026..6993026	P{XP}Tsp42Ea[d05810]
42E4_r6	2R:6997926..6997926	Mi{Trojan-GAL4.0}Tsp42Ea[MI07420-TG4.0]	FBst0076186
42E4	2R:6997926..6997926	Mi{MIC}Tsp42Ea[MI07420]	FBst0043710

*Deleted segments (sequence mapped)* [Export into hitlist]
42A1--42F1	2R:5798246..7000231	Df(2R)nap9	3 stocks
42A13--42E6	2R:6220532..7049672	Df(2R)ED1612	2 stocks
42C4--43A1	2R:6669087..7187225	Df(2R)ED1618	2 stocks
42D1--42E5	2R:6782624..7025046	Df(2R)BSC261	FBst0023161
42D6--42E4	2R:6872641..6993026	Df(2R)Exel6051	FBst0007533
42D6--42F1	2R:6902074..7106633	Df(2R)BSC262	FBst0023297
42E1--43D3	2R:6985802..7533553	Df(2R)ED1673	2 stocks

*Duplicated segments (sequence mapped)* [Export into hitlist]
42E1-42F1	2R:6990978..7085582	Dp(2;3)GV-CH321-62N04	FBst0090557

*Deleted segments (cytology mapped)* [Export into hitlist]
41E2--43B1	2R:5236532..7384080	Df(2R)nap19	2 stocks
41F3--43E7	2R:5507163..7657575	Df(2R)Drl[rv26]
41F4--43A1	2R:5568929..7243202	Df(2R)nap2	2 stocks
41F9--43C1	2R:5729120..7451656	Df(2R)nap3
41F9--42F1	2R:5729120..7110234	Df(2R)nap15
42A1--44C1	2R:5802900..8210543	Df(2R)nap16
42A--42E	2R:5802900..7078091	Df(2R)88b44
42A1--42E7	2R:5802900..7078091	Df(2R)cn88b	2 stocks
42A14--43C7	2R:6223913..7507125	Df(2R)Drl[rv25]	2 stocks
42A16--43A1	2R:6354930..7243202	Df(2R)D5[L]Sz4[R]
42B--43E18	2R:6496636..7861513	Df(2R)cn2b
42B2--43F1	2R:6559456..7920028	Df(2R)cn81f6
42B3--43E18	2R:6651936..7861513	Df(2R)ST1	3 stocks
42B4--44B7	2R:6651946..8169078	Df(2R)cn89d4
42B4--44A1	2R:6651946..7979375	Df(2R)cn87e	2 stocks
42B4--44A1	2R:6651946..7979375	Df(2R)cn87e61
42B4--44A1	2R:6651946..7979375	Df(2R)cn87a
42B4--43F7	2R:6651946..7959340	Df(2R)cn89d99
42B4--43E17	2R:6651946..7803811	Df(2R)cn88e69
42B5--44B4	2R:6651956..8144037	Df(2R)cn88c36
42B5--44B1	2R:6651956..8113584	Df(2R)cn85f3
42C1--44A1	2R:6651966..7979375	Df(2R)cn85d2
42C1--43F8	2R:6651966..7964477	Df(2R)cn87f65
42C1--43F6	2R:6651966..7955744	Df(2R)pk78c
42C2--43D7	2R:6654040..7571522	Df(2R)Drl[rv17]	3 stocks
42C7--43C7	2R:6725808..7507125	Df(2R)Drl[rv28]	FBst0008888
42D1--44B4	2R:6776963..8144037	Df(2R)cn88f93
42D1--43E7	2R:6776963..7657575	Df(2R)Drl[rv7]	2 stocks
42E--44C1	2R:6908323..8210543	Df(2R)cn9	FBst0305669
42E--44B	2R:6908323..8185881	Df(2R)cn3
42E--44A	2R:6908323..8111490	Df(2R)cn1
42E--43F	2R:6908323..7972697	Df(2R)cn15
42E--43F	2R:6908323..7972697	Df(2R)cn2
42E--43E18	2R:6908323..7861513	Df(2R)cn16
42E--43E16	2R:6908323..7791739	Df(2R)cn-91l13a
42E1--43C3	2R:6908323..7465689	Df(2R)Drl[rv3]	2 stocks
42E3--44A3	2R:6991914..8044258	Df(2R)Drl[rv18]	2 stocks
42E3--43F8	2R:6991914..7964477	Df(2R)sple-N3	FBst0008872
42E3--43E4	2R:6991914..7617621	Df(2R)sple-D3
42E3--43E4	2R:6991914..7617621	Df(2R)Drl[rv20]
42E3--43C3	2R:6991914..7465689	Df(2R)pk78k	3 stocks
42E3--43C3	2R:6991914..7465689	Df(2R)sple-78b
42E4--44C5	2R:6991924..8401779	Df(2R)cn91l8
42E4--44C5	2R:6991924..8401779	Df(2R)cn-91l8
42E4--43E18	2R:6991924..7861513	Df(2R)cn-S5
42E4--43E16	2R:6991924..7791739	Df(2R)cn85e1
42E4--43E7	2R:6991924..7657575	Df(2R)Drl[rv5]	FBst0008878

*Duplicated segments (cytology mapped)* [Export into hitlist]
41A1--60D	2R:4460915..24747488	Dp(2;Y)cb25-11
41A--44D	2R:4460915..8660244	Dp(2;2;2)II
41A--44D8	2R:4460915..8660244	Dp(2;3)P32	2 stocks
41F--44B	2R:5405811..8185881	Dp(2;2)cn[+]
42A--60D	2R:5802900..24747488	Dp(2;Y)cb25-9
42A--55E	2R:5802900..18750945	Dp(2;2)SMG45
42C--45D	2R:6651966..9465233	Dp(2;2)A81111
42C--44A	2R:6651966..8111490	Dp(2;3)GYL2

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
41-60A	2R:4460915..23989883	In(F2R)217
41-59F	2R:4460915..23787158	In(2R)41;59F
41-59D	2R:4460915..23434601	In(2R)bw[A]
41A-59D	2R:4460915..23434601	In(2R)bw[VI]
41-58B	2R:4460915..22128418	In(F2R)153
41-57C7	2R:4460915..21179828	In(2R)Pu[K]
41-57A	2R:4460915..20683849	In(2R)C92
41A-57A	2R:4460915..20683849	In(2R)102
41-56E	2R:4460915..19971053	In(2R)41;56E
41-53E	2R:4460915..17039162	In(F2R)241
41-53D	2R:4460915..16882421	In(2R)B2
41A-51F	2R:4460915..15402599	In(2R)Dem1-5
41-49F	2R:4460915..13275886	In(2R)B119
41A-49D4	2R:4460915..12859461	In(2R)vg[79d3]
41-48A3	2R:4460915..11626016	In(2R)en[Enci]
41A-47A	2R:4460915..10611911	In(2R)41-47
41-46A	2R:4460915..9712022	In(F2R)54
41-44F3	2R:4460915..8902430	In(2R)G13
41-44B	2R:4460915..8185881	In(2R)s32
41A-43E17	2R:4460915..7803811	In(2R)cn88f84
41A-43E15	2R:4460915..7776045	In(2R)cn88c99
41A-43E15	2R:4460915..7776045	In(2R)cn85f1
41-43B1	2R:4460915..7384080	In(2R)DX8	2 stocks
41A-42E	2R:4460915..7078091	In(2R)cn83c17
41B-49D4	2R:4582214..12859461	In(2R)vg[84h]
41B-43E16	2R:4582214..7791739	In(2R)cn81f1
41C-57B	2R:4704667..21107330	In(2R)C2
41C-49D4	2R:4704667..12859461	In(2R)vg[83c3]
41C-49D4	2R:4704667..12859461	In(2R)vg[79b4]
41C-49D4	2R:4704667..12859461	In(2R)vg[88d4]
41C-49D4	2R:4704667..12859461	In(2R)vg[87g20]
41D-49D4	2R:5003331..12859461	In(2R)vg[81c28]
41D-49D4	2R:5003331..12859461	In(2R)vg[87g22]
41D-49D4	2R:5003331..12859461	In(2R)vg[78a1]
41D-49D4	2R:5003331..12859461	In(2R)vg[88d43]
41D-49D4	2R:5003331..12859461	In(2R)vg[79d7]
41D4-43E18	2R:5129328..7861513	In(2R)cn88g91
41E-49D4	2R:5146579..12859461	In(2R)vg[79d4]
41E-49D4	2R:5146579..12859461	In(2R)vg[83l3b]
41F-52C	2R:5405811..15890253	In(2R)B208
41F-52A	2R:5405811..15578985	In(2R)Dem2-2
41F-49D	2R:5405811..12883886	In(2R)B3
42A-60B	2R:5802900..24156611	In(2R)Mg109
42A-60A	2R:5802900..23989883	In(2R)PS19
42A-57F	2R:5802900..21758515	In(2R)KA
42A-57F	2R:5802900..21758515	In(2R)40
42A-57C	2R:5802900..21199299	In(2R)K3
42A-53C	2R:5802900..16667220	In(2R)Dem2-3
42A-45B	2R:5802900..9250250	In(2R)St-L
42B-58A	2R:6496636..21978058	In(F2R)39
42B-48C	2R:6496636..11909032	In(F2R)163
42B-46B	2R:6496636..9869622	In(2R)Mg2
42C-50B	2R:6651966..13663923	In(2LR)A8123
42C-47F	2R:6651966..11527782	In(2R)JHI1
42D-60F	2R:6776963..25255318	In(2R)PS20
42D-49E	2R:6776963..13024826	In(2LR)A8148b
42D-47F	2R:6776963..11527782	In(2LR)A81610
42D-45D	2R:6776963..9465233	In(2LR)A8176a
42D-45D	2R:6776963..9465233	In(2LR)A81513
42E-56B	2R:6908323..19156660	In(2LR)A8176b
42E-55E	2R:6908323..18750945	In(2R)K14
42E-47D	2R:6908323..11220954	In(2LR)A8148a
42E-47C	2R:6908323..10977100	In(2R)IW6
42E-45D	2R:6908323..9465233	In(2LR)A8122
42E-45D	2R:6908323..9465233	In(2LR)A8147
42E-43A	2R:6908323..7333730	In(2R)PS21

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
41-100	2R:4460915..32068446	T(2;3)E(SD)1
41-98F	2R:4460915..29184631	T(2;3)L141-50
41A-98C	2R:4460915..28383802	T(2;3)Dem1-19
41-97D	2R:4460915..27054991	T(F2R;3)172
41-80	2R:4460915..23856407	T(2;3)L141-41
41A-94B	2R:4460915..22666854	T(2;3)Dem2-2
41-93E	2R:4460915..21645979	T(2;3)C199
41-92E14	2R:4460915..20522671	T(2;3)H[24]
41-89E	2R:4460915..17123622	T(2;3)P58
41-89E3	2R:4460915..16902970	T(2;3)iab9[65]
41-89D	2R:4460915..16736155	T(2;3)205
41-89B	2R:4460915..16576178	T(2;3)D24,D18#1
41-87B	2R:4460915..12535255	T(2;3)ul10#18
41-86F	2R:4460915..11871712	T(2;3)D24,D18#7
41A-66D10	2R:4460915..8697684	T(2;3)h[m1]
41-66C	2R:4460915..8455041	T(2;3)E(da)	2 stocks
41C-75B	2R:4704667..18155271	T(2;3)V116
42A-96E	2R:5802900..25712016	T(2;3)C5