Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
45C1-45C4	2R:9286827..9289026	Cog6	7 stocks
45C4-45C4	2R:9288957..9291565	Mad1	9 stocks
45C4-45C5	2R:9291856..9302821	Drep2	7 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
41-60	2R:4460915..25255318	l(2)cl-R11	3 stocks
45C2-45C6	2R:9288412..9321197	srg	FBst0006108
45C4-45C4	2R:9288432..9299982	l(2)SH0246

*Insertions (cytology mapped)* [Export into hitlist]
41--60	2R:4460915..25255318	P{Rac1[+t3.6]}1.7.2	FBst0006683
45-45	2R:8985488..9637538	P{Dpse82}45
45C-45C	2R:9250251..9344686	P{A92}45C
45C-45C	2R:9250251..9344686	P{enH+Hox.B}226
45C4-45C4	2R:9288432..9299982	P{GSV2}GS51336

*Insertions (sequence mapped)* [Export into hitlist]
45C4	2R:9291654..9291654	Mi{MIC}MI15483	FBst0061067
45C4_r5	2R:9292393..9292393	PBac{SAstopDsRed}LL04411	FBst0319869
45C4,45C4-45C4	2R:9292514..9292514	P{RS5}Drep2[5-HA-2820]
45C3-45C3	2R:9292569..9292569	P{EP}Drep2[EP2284]
45C4	2R:9292590..9292590	P{GSV7}GS22152
45C4-45C4,45C4	2R:9292613..9292613	P{RS5}Drep2[5-HA-3117]
45C3	2R:9292659..9292659	P{XP}Drep2[d11111]
45C4_r5	2R:9292661..9292661	P{GSV1}Drep2[EP-M89]	FBst0043466
45C3	2R:9292661..9292661	P{SUPor-P}Drep2[KG02396]	FBst0013312
45C3	2R:9292666..9292666	P{XP}Drep2[d00223]
45C3	2R:9292814..9292814	P{EPgy2}Drep2[EY12060]	FBst0020727
45C3	2R:9293507..9293507	PBac{RB}Drep2[e02920]
45C4-45C4	2R:9294045..9294045	P{wHy}Drep2[DG08311]
45C3	2R:9294167..9294173	PBac{PB}Drep2[c05007]
45C3	2R:9294167..9294167	PBac{RB}Drep2[e02653]
45C3	2R:9294170..9294170	PBac{WH}Drep2[f03304]
45C3	2R:9294173..9294173	PBac{WH}Drep2[f04882]
45C4	2R:9297521..9297521	PBac{PB}Drep2[c00500]

*Deleted segments (sequence mapped)* [Export into hitlist]
44F7--45F1	2R:8922730..9553252	Df(2R)ED1791	2 stocks
45A9--45E3	2R:9122189..9515841	Df(2R)BSC279	FBst0023664
45C4--45F4	2R:9292659..9578616	Df(2R)BSC280	FBst0023665

*Duplicated segments (sequence mapped)* [Export into hitlist]
45B7-45C6	2R:9237605..9312776	Dp(2;3)GV-CH321-82A14	FBst0090612

*Deleted segments (cytology mapped)* [Export into hitlist]
44F1--45E2	2R:8783087..9514861	Df(2R)Np
44F2--45C6	2R:8862557..9321197	Df(2R)Np1	2 stocks
44F9--45E1	2R:8929195..9512649	Df(2R)Np6
45A6--45F1	2R:9106436..9569266	Df(2R)w45-15g
45A6--45E3	2R:9106436..9524769	Df(2R)w45-30n	3 stocks
45A8--45F1	2R:9113336..9569266	Df(2R)w45-31n
45A9--45D8	2R:9120394..9459041	Df(2R)w73-1	2 stocks
45A9--45D8	2R:9120394..9459041	Df(2R)w73-2	2 stocks
45B5--45D8	2R:9213419..9459041	Df(2R)w73-3
45B6--45E1	2R:9218346..9512649	Df(2R)w45-47n
45C2--45D8	2R:9288412..9459041	Df(2R)w73-4

*Duplicated segments (cytology mapped)* [Export into hitlist]
41A1--60D	2R:4460915..24747488	Dp(2;Y)cb25-11
42A--60D	2R:5802900..24747488	Dp(2;Y)cb25-9
42A--55E	2R:5802900..18750945	Dp(2;2)SMG45
42C--45D	2R:6651966..9465233	Dp(2;2)A81111
43E--49E	2R:7571523..13024826	Dp(2;2)Y3b
44B--46B	2R:8111491..9869622	Dp(2;2)M4
45--51C	2R:8985488..14872152	Dp(2;2)vg-D.fg

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
41-60A	2R:4460915..23989883	In(F2R)217
41-59F	2R:4460915..23787158	In(2R)41;59F
41-59D	2R:4460915..23434601	In(2R)bw[A]
41A-59D	2R:4460915..23434601	In(2R)bw[VI]
41-58B	2R:4460915..22128418	In(F2R)153
41-57C7	2R:4460915..21179828	In(2R)Pu[K]
41-57A	2R:4460915..20683849	In(2R)C92
41A-57A	2R:4460915..20683849	In(2R)102
41-56E	2R:4460915..19971053	In(2R)41;56E
41-53E	2R:4460915..17039162	In(F2R)241
41-53D	2R:4460915..16882421	In(2R)B2
41A-51F	2R:4460915..15402599	In(2R)Dem1-5
41-49F	2R:4460915..13275886	In(2R)B119
41A-49D4	2R:4460915..12859461	In(2R)vg[79d3]
41-48A3	2R:4460915..11626016	In(2R)en[Enci]
41A-47A	2R:4460915..10611911	In(2R)41-47
41-46A	2R:4460915..9712022	In(F2R)54
41B-49D4	2R:4582214..12859461	In(2R)vg[84h]
41C-57B	2R:4704667..21107330	In(2R)C2
41C-49D4	2R:4704667..12859461	In(2R)vg[87g20]
41C-49D4	2R:4704667..12859461	In(2R)vg[88d4]
41C-49D4	2R:4704667..12859461	In(2R)vg[79b4]
41C-49D4	2R:4704667..12859461	In(2R)vg[83c3]
41D-49D4	2R:5003331..12859461	In(2R)vg[87g22]
41D-49D4	2R:5003331..12859461	In(2R)vg[81c28]
41D-49D4	2R:5003331..12859461	In(2R)vg[88d43]
41D-49D4	2R:5003331..12859461	In(2R)vg[79d7]
41D-49D4	2R:5003331..12859461	In(2R)vg[78a1]
41E-49D4	2R:5146579..12859461	In(2R)vg[83l3b]
41E-49D4	2R:5146579..12859461	In(2R)vg[79d4]
41F-52C	2R:5405811..15890253	In(2R)B208
41F-52A	2R:5405811..15578985	In(2R)Dem2-2
41F-49D	2R:5405811..12883886	In(2R)B3
42A-60B	2R:5802900..24156611	In(2R)Mg109
42A-60A	2R:5802900..23989883	In(2R)PS19
42A-57F	2R:5802900..21758515	In(2R)40
42A-57F	2R:5802900..21758515	In(2R)KA
42A-57C	2R:5802900..21199299	In(2R)K3
42A-53C	2R:5802900..16667220	In(2R)Dem2-3
42B-58A	2R:6496636..21978058	In(F2R)39
42B-48C	2R:6496636..11909032	In(F2R)163
42B-46B	2R:6496636..9869622	In(2R)Mg2
42C-50B	2R:6651966..13663923	In(2LR)A8123
42C-47F	2R:6651966..11527782	In(2R)JHI1
42D-60F	2R:6776963..25255318	In(2R)PS20
42D-49E	2R:6776963..13024826	In(2LR)A8148b
42D-47F	2R:6776963..11527782	In(2LR)A81610
42D-45D	2R:6776963..9465233	In(2LR)A81513
42D-45D	2R:6776963..9465233	In(2LR)A8176a
42E-56B	2R:6908323..19156660	In(2LR)A8176b
42E-55E	2R:6908323..18750945	In(2R)K14
42E-47D	2R:6908323..11220954	In(2LR)A8148a
42E-47C	2R:6908323..10977100	In(2R)IW6
42E-45D	2R:6908323..9465233	In(2LR)A8122
42E-45D	2R:6908323..9465233	In(2LR)A8147
42F-50E	2R:7078092..14289891	In(2R)AWI2
42F-50C	2R:7078092..13994731	In(2R)AWI1
42F-50A	2R:7078092..13523466	In(2LR)A8185
43A-54E	2R:7180674..17811908	In(2R)Mg105
43-53	2R:7180674..17132869	In(2R)SD72-240
43A-52F	2R:7180674..16231534	In(2R)RBR13
43A-47E	2R:7180674..11287018	In(2LR)A81510
43A-45D	2R:7180674..9465233	In(2R)AWI3
43B-53E	2R:7333731..17039162	In(2R)43B;53E
43B-46E	2R:7333731..10111219	In(2R)PS22
43C-56F	2R:7428109..20361757	In(2R)B1
43C-48C	2R:7428109..11909032	In(F2R)32
43C3-49D4	2R:7453163..12859461	In(2R)vg[83c43]
43E-60B	2R:7571523..24156611	In(2R)Mg108
43E-47D	2R:7571523..11220954	In(2R)St-P
43E14-49B11	2R:7748279..12667310	In(2R)cn88c25
43E15-56D2	2R:7756730..19386821	In(2R)cn79b8
43F-56E	2R:7861514..19971053	In(2R)C129
43F-54B	2R:7861514..17507339	In(2R)RBR145
43F-49F	2R:7861514..13275886	In(2R)L
43F-47B	2R:7861514..10799365	In(2R)IF
44A-53D	2R:7972698..16882421	In(2R)L5
44B-57C	2R:8111491..21199299	In(2R)RBR24
44B-51F	2R:8111491..15402599	In(2R)Alt-2
44C-57E	2R:8185882..21549017	In(2R)St-M
44C-54B	2R:8185882..17507339	In(2R)cn10
44C-49F	2R:8185882..13275886	In(2R)K21
44C3-49D4	2R:8257484..12859461	In(2R)vg[72a1]
44D-51C	2R:8436437..14872152	In(F2R)183
44D-47D	2R:8436437..11220954	In(2R)RBR31-1
44E-56B	2R:8660245..19156660	In(2R)ena[GC5]
44E-53F	2R:8660245..17132869	In(2R)Be
44E-47C	2R:8660245..10977100	In(2R)RBR135
44F-51A	2R:8783087..14547366	In(2R)44F;51A
44F2-49D4	2R:8862557..12859461	In(2R)vg[84f51]
45B-53A	2R:9153345..16285583	In(F2R)26
45B-50C	2R:9153345..13994731	In(F2R)52
45B-50C	2R:9153345..13994731	In(F2R)282
45C-58A	2R:9250251..21978058	In(F2R)284
45C-52C	2R:9250251..15890253	In(2R)45C-52C

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
41-100	2R:4460915..32068446	T(2;3)E(SD)1
41-98F	2R:4460915..29184631	T(2;3)L141-50
41A-98C	2R:4460915..28383802	T(2;3)Dem1-19
41-97D	2R:4460915..27054991	T(F2R;3)172
41-80	2R:4460915..23856407	T(2;3)L141-41
41A-94B	2R:4460915..22666854	T(2;3)Dem2-2
41-93E	2R:4460915..21645979	T(2;3)C199
41-92E14	2R:4460915..20522671	T(2;3)H[24]
41-89E	2R:4460915..17123622	T(2;3)P58
41-89E3	2R:4460915..16902970	T(2;3)iab9[65]
41-89D	2R:4460915..16736155	T(2;3)205
41-89B	2R:4460915..16576178	T(2;3)D24,D18#1
41-87B	2R:4460915..12535255	T(2;3)ul10#18
41-86F	2R:4460915..11871712	T(2;3)D24,D18#7
41C-75B	2R:4704667..18155271	T(2;3)V116
42A-96E	2R:5802900..25712016	T(2;3)C5
42F-100F	2R:7078092..32068446	T(2;3)CA15
43-93	2R:7180674..22019295	T(2;3)D7
43D5-75C4	2R:7549958..18378383	T(2;3)L141-28
43E8-75C2	2R:7657576..18262608	T(2;3)MV
43E15-98A12	2R:7756730..27635789	T(2;3)cn74c7
43E15-70F	2R:7756730..14827714	T(2;3)cn88f29
43F-92D	2R:7861514..20259177	T(2;3)C29
44A-87A	2R:7972698..12147054	T(2;3)Mg167
44D-92A	2R:8436437..19695282	T(F2R;3)222
44F-99B	2R:8783087..29775722	T(2;3)Mg175
45C-98A	2R:9250251..27670954	T(2;3)14h