Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
56F11-56F14	2R:20274597..20276142	CG11788	5 stocks
56F14-56F15	2R:20275973..20278915	CG9143	6 stocks
56F15-56F16	2R:20279066..20281127	Mpcp1	8 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
41-60	2R:4460915..25255318	l(2)cl-R11	3 stocks
50C-59B	2R:13663924..22978008	l(2)4-3A
56F5-56F15	2R:20015078..20280826	l(2)56Fb
56F5-56F15	2R:20015078..20280826	M(2)56F
56F5-56F15	2R:20015078..20280826	l(2)56Fg
56F5-56F15	2R:20015078..20280826	l(2)56Fd
56F5-56F15	2R:20015078..20280826	l(2)56Ff
56F5-56F15	2R:20015078..20280826	l(2)56Fe
56F9-58A1	2R:20151923..21801709	hy	3 stocks
56F14-56F14	2R:20275742..20276495	l(2)SH0032
56F14-56F14	2R:20275742..20276495	l(2)SH0643

*Insertions (cytology mapped)* [Export into hitlist]
41--60	2R:4460915..25255318	P{Rac1[+t3.6]}1.7.2	FBst0006683
55F-57F	2R:18750946..21758515	P{GawB}c801
56F-56F	2R:19971054..20361757	P{Ddc1/4}56Fb
56F-56F	2R:19971054..20361757	P{A92}A5
56F-56F	2R:19971054..20361757	P{en-lacZ(ryStu)}10
56F-56F	2R:19971054..20361757	P{Ddc1/4}56Fa
56F-56F	2R:19971054..20361757	P{lwB}X55
56F-56F	2R:19971054..20361757	P{418}I2.1.2
56F10-56F14	2R:20219577..20276495	P{PZ}PCNA[02697]
56F11-56F14	2R:20238896..20276495	P{lacW}PCNA[k00501]	FBst0301112
56F13-56F16	2R:20275732..20336563	P{PZ}05355b

*Insertions (sequence mapped)* [Export into hitlist]
56F14-56F14	2R:20276136..20276136	PBac{PB}CG9143[c03501]
56F12-56F13	2R:20278303..20278420	P{lacW}l(2)SH0373[SH0373]
56F15	2R:20278834..20278834	PBac{RB}CG9143[e00691]	2 stocks
56F15_r5	2R:20278843..20278843	PBac{SAstopDsRed}LL05689	FBst0320282
56F15	2R:20278927..20278927	P{EPgy2}CG9143[EY15000]	FBst0020962

*Deleted segments (sequence mapped)* [Export into hitlist]
56F11--56F16	2R:20245186..20313635	Df(2R)Exel7162	FBst0007896
56F12--57A4	2R:20274486..20588392	Df(2R)BSC19	2 stocks
56F15--57A9	2R:20278834..20667273	Df(2R)BSC701	FBst0026553

*Duplicated segments (sequence mapped)* [Export into hitlist]
56F9-56F16	2R:20212123..20317561	Dp(2;3)GV-CH321-05O24	FBst0089710

*Deleted segments (cytology mapped)* [Export into hitlist]
56F5--56F15	2R:20015078..20280826	Df(2R)017	2 stocks
56F5--56F15	2R:20015078..20280826	Df(2R)173	3 stocks
56F8--56F17	2R:20111151..20361757	Df(2R)min	2 stocks

*Duplicated segments (cytology mapped)* [Export into hitlist]
41A1--60D	2R:4460915..24747488	Dp(2;Y)cb25-11
42A--60D	2R:5802900..24747488	Dp(2;Y)cb25-9
52D5--57C6	2R:15948157..21167501	Dp(2;2)Cam15
53D--57C	2R:16667221..21199299	Dp(2;Y)53D;57C
56A--56F	2R:18927716..20361757	Dp(2;2)M56F[h1]
56C--59D	2R:19156661..23434601	Dp(2;2)M56F[+]2
56D1--59D3	2R:19329545..23250118	Dp(2;2)l-85
56E1--58B	2R:19570459..22128418	Dp(2;2)M56F[+]4
56F1--60B2	2R:19971054..24016380	Dp(2;2)l-25
56F1--58E	2R:19971054..22584651	Dp(2;2)l-23
56F--57D	2R:19971054..21378741	Dp(2;2)M6
56F5--60E	2R:20015078..25017640	Dp(2;2)M2

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
41-60A	2R:4460915..23989883	In(F2R)217
41-59F	2R:4460915..23787158	In(2R)41;59F
41-59D	2R:4460915..23434601	In(2R)bw[A]
41A-59D	2R:4460915..23434601	In(2R)bw[VI]
41-58B	2R:4460915..22128418	In(F2R)153
41-57C7	2R:4460915..21179828	In(2R)Pu[K]
41-57A	2R:4460915..20683849	In(2R)C92
41A-57A	2R:4460915..20683849	In(2R)102
41C-57B	2R:4704667..21107330	In(2R)C2
42A-60B	2R:5802900..24156611	In(2R)Mg109
42A-60A	2R:5802900..23989883	In(2R)PS19
42A-57F	2R:5802900..21758515	In(2R)40
42A-57F	2R:5802900..21758515	In(2R)KA
42A-57C	2R:5802900..21199299	In(2R)K3
42B-58A	2R:6496636..21978058	In(F2R)39
42D-60F	2R:6776963..25255318	In(2R)PS20
43C-56F	2R:7428109..20361757	In(2R)B1
43E-60B	2R:7571523..24156611	In(2R)Mg108
44B-57C	2R:8111491..21199299	In(2R)RBR24
44C-57E	2R:8185882..21549017	In(2R)St-M
45C-58A	2R:9250251..21978058	In(F2R)284
45D-58E	2R:9344687..22584651	In(2LR)A8158
45D-58E	2R:9344687..22584651	In(2LR)A81815
45D-57B	2R:9344687..21107330	In(2LR)A8128
46A-57F	2R:9637539..21758515	In(2R)12
47E-58E	2R:11220955..22584651	In(2LR)A8164b
47F-60A	2R:11287019..23989883	In(2R)Z5
48A3-59C3	2R:11580032..23098521	In(2R)SD1[rv1]
49B-60B	2R:12530888..24156611	In(2R)St-B
49D4-60F1	2R:12825913..25044553	In(2R)vg[88e28]
49D4-60B12	2R:12825913..24144090	In(2R)vg[87g43]
49D4-59D	2R:12825913..23434601	In(2R)vg[83f38]
49D4-59D4	2R:12825913..23285389	In(2R)vg[78k3]
49E-57E	2R:12883887..21549017	In(2R)RBR93
50A-60B	2R:13275887..24156611	In(2R)AWI4
50A-57B	2R:13275887..21107330	In(2R)RBR31-2
50B-57A	2R:13523467..20683849	In(2R)PB
50C-57C	2R:13663924..21199299	In(2R)JHI3
51B-59B	2R:14547367..22978008	In(2R)IW7
51B-59A	2R:14547367..22766694	In(2R)JHI4
51D-59F	2R:14872153..23787158	In(2R)ZP7
51E-57B	2R:15093454..21107330	In(2R)IH
51E-57A	2R:15093454..20683849	In(2R)RBR137
51F-60D	2R:15265243..24747488	In(2R)PS25
51F-57F	2R:15265243..21758515	In(2R)RBR66
52A-60A	2R:15402600..23989883	In(2R)Z6
52A-58B	2R:15402600..22128418	In(2R)SMG10
52A-57C	2R:15402600..21199299	In(2R)Mg103
52A-56F	2R:15402600..20361757	In(2R)PS43
52D12-60B2	2R:16001264..24016380	In(2R)88f5
52E-60A	2R:16042768..23989883	In(2R)Mg119
53-58	2R:16231535..22675646	In(2R)k05507
53A-56F	2R:16231535..20361757	In(2R)ZP9
53B-56F	2R:16285584..20361757	In(2R)Alt-3
53D-59F	2R:16667221..23787158	In(2R)K15
53D-59A	2R:16667221..22766694	In(2R)ID
53F-57A	2R:17039163..20683849	In(2R)PE
54A-57A	2R:17132870..20683849	In(2R)ZP10
54B-60F	2R:17227748..25255318	In(2R)St-Q
54B-59C	2R:17227748..23139064	In(2R)PS26
54C-60D	2R:17507340..24747488	In(2R)Z7
54D-59D	2R:17601740..23434601	In(2R)H71
54D-59C	2R:17601740..23139064	In(2R)JHI7
54E-59D	2R:17701491..23434601	In(2R)JHI8
54E-57D	2R:17701491..21378741	In(2R)Mg107
54F-59A	2R:17811909..22766694	In(2R)TE35B-3a
54F-59A	2R:17811909..22766694	In(2R)CA40
55A4-57A	2R:18012039..20683849	In(2R)Pcl[11]	2 stocks
55E-60E	2R:18581569..25017640	In(2R)HNI
55E-59B	2R:18581569..22978008	In(2R)S20
55E-58E	2R:18581569..22584651	In(2R)II
55E-57D	2R:18581569..21378741	In(2R)Kc
55E-57A	2R:18581569..20683849	In(2R)55E-57A
55F-60F	2R:18750946..25255318	In(2R)SMG11
55F-60E	2R:18750946..25017640	In(2R)St-J
55F-60E	2R:18750946..25017640	In(2R)J
56A-57B	2R:18927716..21107330	In(2R)JHI9
56D-59B	2R:19329545..22978008	In(2R)K1
56D-59B	2R:19329545..22978008	In(2R)PS27
56D-58D	2R:19329545..22417520	In(2LR)A8129
56F-58F	2R:19971054..22675646	In(2R)IG

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
41-100	2R:4460915..32068446	T(2;3)E(SD)1
41-98F	2R:4460915..29184631	T(2;3)L141-50
41A-98C	2R:4460915..28383802	T(2;3)Dem1-19
41-97D	2R:4460915..27054991	T(F2R;3)172
41-80	2R:4460915..23856407	T(2;3)L141-41
41A-94B	2R:4460915..22666854	T(2;3)Dem2-2
41-93E	2R:4460915..21645979	T(2;3)C199
41-92E14	2R:4460915..20522671	T(2;3)H[24]
42A-96E	2R:5802900..25712016	T(2;3)C5
42F-100F	2R:7078092..32068446	T(2;3)CA15
43-93	2R:7180674..22019295	T(2;3)D7
43E15-98A12	2R:7756730..27635789	T(2;3)cn74c7
44F-99B	2R:8783087..29775722	T(2;3)Mg175
45C-98A	2R:9250251..27670954	T(2;3)14h
45F-94C	2R:9534678..22827295	T(2;3)A81115
47D-93B	2R:10977101..21124232	T(2;3)Mg51
48A3-96C	2R:11580032..25292351	T(2;3)en[LA3]
48A3-79F	2R:11580032..22718905	T(2;3)en[SF24]
49A-98B	2R:12345604..28082526	T(2;3)Hin111
49A-80A	2R:12345604..22843488	T(2;3)6r6
49D4-96C2	2R:12825913..25173390	T(2;3)vg88d9
49D4-80C2	2R:12825913..23005626	T(2;3)vg[88f31]
49E-92E	2R:12883887..20525400	T(2;3)Mg187
50D1-79A	2R:13994732..22007689	T(2;3)ML307
51A-80C	2R:14389492..23077120	T(2;3)L141-18
51F-94E	2R:15265243..23363938	T(2;3)Mg53
52A-98F1	2R:15402600..28891153	T(2;3)XP8
52A-93B	2R:15402600..21124232	T(2;3)C149
52B-99C	2R:15578986..29957664	T(2;3)cb25-17
52F-96B	2R:16150096..25101913	T(2;3)MP44
53A-100B9	2R:16231535..31275051	T(2;3)Su(bw[D])133
53-80	2R:16231535..23856407	T(2;3)pk[D1-rv6]
53C-96C	2R:16333900..25292351	T(2;3)ML225
53D-97B	2R:16667221..26558307	T(2;3)Mg174
54-98	2R:17132870..29184631	T(2;3)Y2
54C-95D	2R:17507340..24063100	T(2;3)H110
54C-77D	2R:17507340..20611181	T(2;3)6r16
55B-100D	2R:18013903..31917440	T(2;3)Su(bw[D])5
55E10-98C3	2R:18723228..28326512	T(2;3)89e64c
55F-100D	2R:18750946..31917440	T(2;3)Su(bw[D])126
56-94	2R:18927716..23509789	T(2;3)SD-2
56E-78F	2R:19570459..21847572	T(2;3)Mg181
56F-97B	2R:19971054..26558307	T(2;3)JHT2
56F-78D	2R:19971054..21605535	T(2;3)56F;78D
56F;[>56F]-56F;[>56F]	2R:19971054..20361757	T(2;3)Scf[R13]
40-41;56F;62F;79B	2R:19971054..20361757	T(2;3)C177