Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
61D4-61E1,61E-61E,61E-61E,61E-61E	3L:914074..993788	Glut1	24 stocks
61E1-61E1	3L:961769..962471	lncRNA:CR45809
61E1-61E1	3L:962756..963099	lncRNA:CR45810
61E1-61E1	3L:993983..995703	aln	4 stocks
61E1-61E2,61E1-61F2,61E-61E,61F8-61F8,61E-61E	3L:995982..1034875	trio	85 stocks
61E1-61E1	3L:1001027..1002195	lncRNA:CR45811	FBst0059163
61E2-61E2	3L:1034697..1036298	CG9205	6 stocks
61E2-61F1,61F1-61F3	3L:1036369..1101089	bab1	109 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
61-100	3L:10001..32068446	l(3)09904c	FBst0011740
61-100	3L:10001..32068446	ms(3)2033
61-100	3L:10001..32068446	l(3)L1159
61-100	3L:10001..32068446	ms(3)1100A
61-100	3L:10001..32068446	l(3)Ax18
61-100	3L:10001..32068446	tu-36e	FBst0000445
61-100	3L:10001..32068446	hsk
61-100	3L:10001..32068446	l(3)04704a
61-100	3L:10001..32068446	lup-1
61-100	3L:10001..32068446	l(3)05143
61-100	3L:10001..32068446	nkg
61-100	3L:10001..32068446	M(3)54c
61-100	3L:10001..32068446	E(var)3-201
61-100	3L:10001..32068446	Ms(3)R24
61-100	3L:10001..32068446	l(3)09402
61-100	3L:10001..32068446	hyl	FBst0304846
61-100	3L:10001..32068446	l(3)s9999
61-100	3L:10001..32068446	l(3)06948a
61-100	3L:10001..32068446	l(3)A215.1M3
61-100	3L:10001..32068446	l(3)neo64
61-100	3L:10001..32068446	Su(osk)3-O26
61-100	3L:10001..32068446	l(3)08034
61-100	3L:10001..32068446	l(3)Ax27
61-100	3L:10001..32068446	l(3)319.4
61-100	3L:10001..32068446	fs(3)85Aa	FBst0004561
61-100	3L:10001..32068446	l(3)04679
61-100	3L:10001..32068446	lup-2
61-100	3L:10001..32068446	l(3)j6C3	FBst0012087
61-100	3L:10001..32068446	l(3)01949
61-100	3L:10001..32068446	l(3)12E7
61-100	3L:10001..32068446	l(3)neo65
61-100	3L:10001..32068446	l(3)04836
61-100	3L:10001..32068446	Su(Raf)3C
61-100	3L:10001..32068446	fs(3)2755
61-100	3L:10001..32068446	l(3)04704b
61-100	3L:10001..32068446	Au	FBst0067642
61-100	3L:10001..32068446	l(3)j6E3	FBst0012133
61-100	3L:10001..32068446	fs(3)820
61-100	3L:10001..32068446	M(3)32l
61-100	3L:10001..32068446	Dew	FBst0001257
61-100	3L:10001..32068446	l(3)EX-G13
61-100	3L:10001..32068446	l(3)9D4
61-100	3L:10001..32068446	M(3)39b
61-100	3L:10001..32068446	Wedge	3 stocks
61-100	3L:10001..32068446	l(3)s2681	2 stocks
61-100	3L:10001..32068446	l(3)01619
61-100	3L:10001..32068446	l(3)Ax7
61-80	3L:10001..23856407	l(3)cl-L5
61A-64E	3L:10001..5816953	Rnase2
61E-61E	3L:924624..1082762	fap
61E2-62A6	3L:1006403..1587732	aa	FBst0000445

*Insertions (cytology mapped)* [Export into hitlist]
61D--61E	3L:756303..1082762	P{A92}M32b
61D4-61E1	3L:890467..1006402	P{GT1}Glut1[BG01710]
61D4-61E1	3L:890467..1006402	Mi{PT-HA.FRT.un}Glut1[MI05056-HA.FRT.un]
61D4-61E1	3L:890467..1006402	Mi{PT-mCh.0}Glut1[MI02222-mCh.0]
61E--61F	3L:924624..1393741	P{Ubi-GFP.D}61EF	3 stocks
61E-61E	3L:924624..1082762	P{lacW}S026438a
61E-61E	3L:924624..1082762	P{lacW}S004019a
61E-61E	3L:924624..1082762	P{lacW}Glut1[S007412]
61E-61E	3L:924624..1082762	P{SRS3.9}4	FBst0300705
61E-61E	3L:924624..1082762	P{lacW}40B6
61E1--61E2	3L:924624..1056487	P{lacW}l(3)S026437[S026437]
61E1-61E1	3L:924624..1006402	TI{2A-GAL4}aln[Δ-Gal4]
61E1-61E1	3L:924624..1006402	TI{2A-GAL4}aln[Ty1-T2A-Gal4]
61E1-61E1	3L:924624..1006402	TI{TI}aln[1]
61E1-61E1	3L:924624..1006402	TI{TI}aln[2]
61E1-61E1	3L:924624..1006402	P{XP}d03554
61E2-61F1	3L:1006403..1132848	P{lArB}bab1[A128.1F3]
61E2-61F1	3L:1006403..1132848	P{GawB}bab1[Agal4-5]	FBst0006802
61E2-61F1	3L:1006403..1132848	P{GawB}bab1[Agal4-4]
61E2-61F1	3L:1006403..1132848	P{GawB}bab1[Agal4-6]
61E2-61F1	3L:1006403..1132848	P{GawB}bab1[Gal4]
61E2-61E2	3L:1006403..1056487	PBac{WH}f00337
61E2-61E2	3L:1006403..1056487	P{RS5r}5-HA-1654

*Insertions (sequence mapped)* [Export into hitlist]
61E1	3L:944091..944091	Mi{ET1}Glut1[MB01761]	FBst0023357
61E1	3L:959581..959581	P{GT1}Glut1[BG01271]	FBst0012464
61E1	3L:959584..959584	P{XP}Glut1[d05758]
61E1-61E1	3L:959592..959592	P{EP}Glut1[EP3646]
61E1	3L:973644..973644	Mi{ET1}Glut1[MB07446]	FBst0025552
61E1	3L:973896..973896	Mi{MIC}Glut1[MI05056]	FBst0037890
61E1	3L:981583..981583	Mi{MIC}Glut1[MI12492]	FBst0058528
61E1	3L:983004..983004	Mi{MIC}Glut1[MI02222]	FBst0033178
61E1_r6	3L:983004..983004	Mi{PT-GFSTF.0}Glut1[MI02222-GFSTF.0]	FBst0059607
61E1	3L:987466..987466	Mi{ET1}Glut1[MB01876]	FBst0023374
61E1	3L:994733..994733	Mi{ET1}aln[MB06619]	FBst0025327
61E1	3L:1001709..1001709	Mi{MIC}trio[MI13563]	FBst0059163
61E1_r6	3L:1001709..1001709	Mi{Trojan-GAL4.0}trio[MI13563-TG4.0]	FBst0076752
61E1-61E2	3L:1003654..1009321	P{lacW}trio[S036810]
61E2	3L:1006669..1006669	PBac{WH}trio[f03154]
61E2	3L:1006796..1006796	PBac{PB}trio[c01456]
61E2	3L:1007970..1007970	P{GSV6}GS11937
61E2	3L:1007998..1007998	Mi{ET1}trio[MB09917]	FBst0029073
61E2	3L:1017668..1017668	PBac{PB}trio[c04496]
61E2	3L:1017852..1017852	Mi{MIC}trio[MI03652]	FBst0037360
61E2_r6	3L:1017852..1017852	Mi{PT-GFSTF.0}trio[MI03652-GFSTF.0]	FBst0059808
61E2	3L:1034579..1034579	Mi{MIC}trio[MI04471]	FBst0037681
61E2	3L:1034617..1034617	P{EPgy2}trio[EY09318]	FBst0020041
61E3	3L:1034632..1034632	P{SUPor-P}trio[KG06642]	2 stocks
61E2	3L:1034856..1034856	PBac{PB}trio[c07082]
61E2_r5	3L:1034856..1034856	PBac{SAstopDsRed}trio[LL00125]	FBst0318679
61E2-61E2	3L:1034856..1034856	P{lacW}trio[S137203]	FBst0008594
61E2	3L:1034861..1034861	P{GSV6}GS12485
61E2-61E2	3L:1034861..1034861	P{lacW}trio[S138606]
61E2_r5	3L:1035095..1035095	PBac{SAstopDsRed}LL04984	FBst0320025
61E2	3L:1035182..1035182	P{RS5}CG9205[5-HA-1654]
61E2	3L:1035194..1035194	P{Mae-UAS.6.11}CG9205[LA00982]	FBst0022258
61E2	3L:1035252..1035252	PBac{RB}CG9205[e00317]
61E2	3L:1037717..1037717	Mi{ET1}bab1[MB01972]	FBst0023859
61E2	3L:1041484..1041484	Mi{MIC}bab1[MI02308]	FBst0034473

*Deleted segments (sequence mapped)* [Export into hitlist]
61C3--62A2	3L:544273..1478937	Df(3L)ED4191
61C7--62A2	3L:639583..1478937	Df(3L)ED4196	2 stocks
61C9--62A6	3L:738739..1568108	Df(3L)ED207	2 stocks
61C9--62A4	3L:738739..1546931	Df(3L)ED4238	2 stocks
61C9--61F7	3L:738739..1336381	Df(3L)ED202	2 stocks
61C9--61E1	3L:749809..959651	Df(3L)Exel6086	FBst0007565

*Duplicated segments (sequence mapped)* [Export into hitlist]
61E1-61E3	3L:975129..1060786	Dp(3;2)GV-CH321-87M07	FBst0090057
61E2-61F1	3L:1010189..1109596	Dp(3;2)GV-CH321-69B22	FBst0089995

*Deleted segments (cytology mapped)* [Export into hitlist]
3Lt--73C11	3L:10001..16805146	Df(3L)st-RX9
3Lt--73A4	3L:10001..16539625	Df(3L)st-E46
3Lt--73A4	3L:10001..16539625	Df(3L)st-E53
61C--66D	3L:298521..8812549	Df(3L)Mg27
61C--62A5	3L:298521..1568009	Df(3L)29b
61C1--61F3	3L:298521..1216926	Df(3L)Ar12-1	2 stocks
61C3--61E	3L:456079..1082762	Df(3L)Ar11	3 stocks
61C4--62A8	3L:563756..1622626	Df(3L)Ar14-8	3 stocks
61D3--61F8	3L:880121..1393741	Df(3L)bab-PG	2 stocks
61E1--62B1	3L:924624..1761634	Df(3L)ru100.392
61E--62A4	3L:924624..1548286	Df(3L)ru300.234
61E1--62A3	3L:924624..1546607	Df(3L)ve

*Duplicated segments (cytology mapped)* [Export into hitlist]
61A--88D2	3L:10001..14779741	Dp(3;3)BK63
61A--63E	3L:10001..3755734	Dp(3;3)pdp23
61B--62B	3L:114103..1979672	Dp(3;3)BK48
61C--62F	3L:298521..2864582	Dp(3;3)BK55
61C--62D	3L:298521..2386781	Dp(3;3)BK83
61C--62B	3L:298521..1979672	Dp(3;3)BK33
61C--61F	3L:298521..1393741	Dp(3;3)BK93
61C--61F	3L:298521..1393741	Dp(3;3)BK135

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
61A-96F	3L:10001..26106891	In(3LR)Mg66
61A-67B	3L:10001..9547269	In(3L)St-A
61A-62D	3L:10001..2386781	In(3L)AM44
61C-98A	3L:298521..27670954	In(3LR)Mg122
61C-67D	3L:298521..10316395	In(3L)SMG18
61C-64C	3L:298521..5388412	In(3L)St-J
61C-62C	3L:298521..2142693	In(3L)ZP16
61C4-94A	3L:563756..22474684	In(3LR)marb[BX9]
61D-66E	3L:756303..8981730	In(3L)IB
61E2-61E3-86C1-86C2	3L:1006403..1056487	In(3LR)208

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
61E;66D1-66D3;66D10	3L:924624..1082762	Tp(3;3)hry[M3]	FBst0305399
h35--h46;[<61E]	3L:924624..1082762	T(2;3)Ch
61E1-61F5-102B-102C	3L:924624..1006402	T(3;4)A22