Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
6B2-6C1	X:6540771..6589173	CG34417	13 stocks
6C1-6C1	X:6589290..6590646	CG17717	3 stocks
6C1-6C1	X:6590776..6596954	Pat1	11 stocks
6C1-6C1	X:6592533..6593069	lncRNA:CR43832
6C1-6C1	X:6597088..6599699	APC7	7 stocks
6C1-6C3	X:6600062..6653015	pigs	12 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
1-20	X:103615..23108331	l(1)EH275a
1-20	X:103615..23108331	ms(1)10
1-20	X:103615..23108331	l(1)M86.4
1-20	X:103615..23108331	l(1)U3
1-20	X:103615..23108331	mei-99	FBst0004882
1-20	X:103615..23108331	dh	FBst0001539
1-20	X:103615..23108331	l(1)L25.7
1-20	X:103615..23108331	l(1)M76.3
1-20	X:103615..23108331	l(1)K84.3
1-20	X:103615..23108331	l(1)Uc-1
1-20	X:103615..23108331	l(1)BP
1-20	X:103615..23108331	l(1)M95.1
1-20	X:103615..23108331	l(1)5-39-1
1-20	X:103615..23108331	ms(1)66
1-20	X:103615..23108331	ms(1)294
1-20	X:103615..23108331	l(1)K87.2
1-20	X:103615..23108331	mei-269
1-20	X:103615..23108331	ms(1)12
1-20	X:103615..23108331	l(1)VA624
1-20	X:103615..23108331	l(1)64	FBst0313556
1-20	X:103615..23108331	c(1)a
1-20	X:103615..23108331	l(1)14P11
1-20	X:103615..23108331	mei-160	FBst0004878
5D-6E	X:5955321..7033898	fs(1)K741	2 stocks
5E8-6D1	X:6305232..6788583	l(1)5Da
6A3-6E5	X:6482656..7033878	scp	2 stocks
6C-6C	X:6585391..6779510	l(1)G0254	2 stocks

*Insertions (cytology mapped)* [Export into hitlist]
2B13--12B18	X:1860969..13757665	P{lacW}arm[G0268a]	FBst0314575
6B2-6C1	X:6537975..6614449	P+PBac{XP3.WH3}CG34417[1]	FBst0039616
6C--6E	X:6585391..7033898	P{CaSpeR}cx34.11b
6C-6C	X:6585391..6779510	P{bw[+]L}6C
6C-6C	X:6585391..6779510	P{lacW}l(1)G0254[G0254]	2 stocks
6C-6C	X:6585391..6779510	P{R7.7}4
6C1-6C3	X:6585391..6660630	P{GAL4}pigs[Intron1]
6C1-6C3	X:6585391..6660630	TI{TI}pigs[GFP]
6C1-6C3	X:6585391..6660630	P{GAL4}pigs[Intron2]
6C1-6C1	X:6585391..6614449	P{?EPgy2}APC7[1]

*Insertions (sequence mapped)* [Export into hitlist]
6C1	X:6587347..6587347	P{GT1}CG34417[BG02303b]
6C1-6C1	X:6590803..6590803	P{GawB}Pat1[NP0110]	FBst0302393
6C1-6C1	X:6590807..6590807	P{EP}Pat1[G17333]	FBst1023636
6C1	X:6590814..6590814	P{GT1}Pat1[BG02303a]
6C1	X:6590814..6590814	P{EPgy2}Pat1[EY15664]	FBst0021151
6C1-6C1	X:6590877..6591584	P{Mae-UAS.6.11}Pat1[GG01232]
6C1-6C1	X:6591814..6591814	PBac{768.FSVS-0}Pat1[CPTI003542]	FBst0325407
6C1	X:6592272..6592272	PBac{RB}Pat1[e02477]	FBst0018059
6C1-6C1	X:6599257..6599257	P{EP}APC7[G10431]	FBst1023297
6C1-6C1	X:6599360..6599459	P{GawB}APC7[NP1512]	FBst0302884
6C1	X:6599364..6599364	P{EPgy2}APC7[EY02849]
6C1	X:6599493..6599493	P{EPgy2}APC7[EY11333]
6C1	X:6600851..6600851	Mi{MIC}pigs[MI11007]	FBst0056274
6C1-6C1	X:6601704..6601840	P{GawB}pigs[NP1005]	FBst0302722
6C1	X:6601782..6601782	P{GSV2}GS5117	FBst0308732
6C1-6C1	X:6602165..6602165	P{EP}pigs[G10453]	FBst1023301
6C2	X:6602183..6602183	P{GT1}pigs[BG00919]
6C1	X:6602244..6602244	P{GSV3}GS6081
6C1	X:6602323..6602323	P{XP}pigs[d10305]
6C1	X:6604848..6604848	P{GSV1}pigs[GS1067]	FBst0308114

*Deleted segments (sequence mapped)* [Export into hitlist]
6B2--6C4	X:6543963..6669857	Df(1)Exel6240	FBst0007714
6C1--6C3	X:6592272..6643217	Df(1)e02477-d06059	FBst0039617

*Duplicated segments (sequence mapped)* [Export into hitlist]
6B1--6C1	X:6519417..6592695	Dp(1;3)DC158	FBst0030296
6B3-6C3	X:6560506..6649298	Dp(1;3)DC159	FBst0032268
6C1--6C5	X:6590306..6681095	Dp(1;3)DC160	FBst0030297

*Deleted segments (cytology mapped)* [Export into hitlist]
2D--12B6	X:2083109..13754475	Df(1)w71b
3A10--12A8	X:2658572..13623898	Df(1)w70j
3B5--12A10	X:2753186..13646537	Df(1)w70e
3C--12B10	X:2804156..13757665	Df(1)LCD

*Duplicated segments (cytology mapped)* [Export into hitlist]
3A--11E	X:2328358..13346259	Dp(1;1)SM2
3A2--8C1	X:2354343..9003206	Dp(1;1)Gr
3C1--6F6	X:2804156..7116431	Dp(1;1)Bt
3C11--7B3	X:3255075..7557502	Dp(1;1)A10.3
4C12--8F10	X:4668106..9709556	Dp(1;1)J2.1
4E2--6F2	X:5027641..7071415	Dp(1;1)4E-6F
5A--7A	X:5475817..7286017	Dp(1;2;1)AT	2 stocks
5E--7A	X:6198962..7286017	Dp(1;1)hdp-b[rv]
6A--8A	X:6400666..8768350	Dp(1;1)GH65

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
1A-10A	X:103615..11198803	In(1)T2
1A-7D	X:103615..8246254	In(1)T1
1B1-20D	X:408583..22716656	In(1)y[A74e]
1B1-20D	X:408583..22716656	In(1)y[A74b51]
1B1-20A	X:408583..21675680	In(1)y[A79d2]
1B1-20A	X:408583..21675680	In(1)y[A72d3]
1B1-20A	X:408583..21675680	In(1)y[89d68]
1B1-19E8	X:408583..21086629	In(1)y[88f86]
1B1-18D2	X:408583..19573161	In(1)y[88c63]
1B1-16D	X:408583..17841787	In(1)y[A79b21]
1B1-16C8	X:408583..17761755	In(1)y[A76b94]
1B1-11E3	X:408583..13217908	In(1)y[85f2]
1B-10A	X:408583..11198803	In(1)GJ5
1B1-9D	X:408583..10645358	In(1)y[A74c166]
1B4-6D8	X:466699..6863445	In(1)sc[7]	9 stocks
1C-10B	X:660484..11489173	In(1)65
1F-14A	X:1254810..16113516	In(1)C146
2B5-20F	X:1660982..23108331	In(1)GA106
2B5-20A	X:1660982..21675680	In(1)VE891
2C3-7B1	X:2019122..7337287	In(1)HC207	2 stocks
2D-14F	X:2083109..16667591	In(1)Mg96
2D-7D1	X:2083109..7970075	In(1)sn[s-1-73]
3B1-20F	X:2666235..23108331	In(1)GE257
3B1-20A	X:2666235..21675680	In(1)GE228
3B1-12F2	X:2666235..14718166	In(1)62b12
3C-20F	X:2804156..23108331	In(1)w[is]
3C2-20C	X:2845023..22597814	In(1)w[77d]
3C2-20B	X:2845023..22371346	In(1)w83c19
3C2-20B	X:2845023..22371346	In(1)w88f83
3C2-19E	X:2845023..21086629	In(1)w88c87
3C2-19E4	X:2845023..20921597	In(1)w[89e52]
3C2-18F	X:2845023..19887081	In(1)w[EM20]
3C2-18E	X:2845023..19747669	In(1)w[81f3]
3C2-18C	X:2845023..19555536	In(1)w8631-1A
3C2-17D	X:2845023..18803707	In(1)w[89e12]
3C2-16D	X:2845023..17841787	In(1)w79b3
3C2-12B9	X:2845023..13755214	In(1)z[+64b9]
3C2-9A2	X:2845023..9871237	In(1)w88c60
3C2-8F	X:2845023..9709556	In(1)w72b
3C2-7E	X:2845023..8465638	In(1)w[79b7]
3C3-20D2	X:2907915..22716656	In(1)w[m54l]
3C5-20A	X:2976542..21675680	In(1)C171
3C7-19E	X:3102328..21086629	In(1)N[8d5]
3C7-14B	X:3102328..16363596	In(1)N[298]
3C7-8E	X:3102328..9600460	In(1)N[P]
4-17B	X:3955447..18502714	In(1)SMG3
4A-14D	X:3955447..16520529	In(1)Dem1-1
4-9	X:3955447..10976635	In(1)M3
4B-7A	X:4115669..7286017	In(1)IC
4B4-7B3	X:4234786..7557502	In(1)ct[43aH1]
4D-17B	X:4749024..18502714	In(1)St-D
4D-12E	X:4749024..14510750	In(1)Dem1-2
4D-9A	X:4749024..10055610	In(1)U7.4cm1
4D-6F	X:4749024..7150636	In(1)U7.6.1
4D-6F	X:4749024..7150636	In(1)U7.9
4E-20F	X:4964040..23108331	In(1)l-v132
5A-16E	X:5475817..17883261	In(1)IW1
5A-7B3	X:5475817..7557502	In(1)ct[J13]
5A-6F5	X:5475817..7114904	In(1)Sxl[+fPb-11]
5B-19D	X:5697153..20604985	In(1)89e80
5B-11A7	X:5697153..12294293	In(1)V7-12
5C-12C1	X:5766003..13767270	In(1)rdgB5
5C-8F	X:5766003..9709556	In(1)Mg83
5D1-15A1	X:5955321..16701269	In(1)r[hd1-4]
5E-12D	X:6198962..14080987	In(1)T3
5E-10C	X:6198962..11607195	In(1)IW2
6A1-19E8	X:6400666..21086629	In(1)RF19	2 stocks

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
1A-56A	X:103615..19012906	T(1;2)SP18
1A5-66C1	X:349644..8246397	T(1;3)JC56
1B1-98C	X:408583..28383802	T(1;3)y[75r]
1B1-98C	X:408583..28383802	T(1;3)y[67k5]
1B1-60F4	X:408583..25101785	T(1;2)y[A76b37]
1B-38E	X:408583..20812419	T(1;2)OR25
1B1-36D	X:408583..17817472	T(1;2)y[260-13]
1B1-49F	X:408583..13275886	T(1;2)y[R7]
1B1-87A	X:408583..12147054	T(1;3)y[R19]
1B1-28B	X:408583..7644956	T(1;2)y[85f3]
1B1-27C	X:408583..6969877	T(1;2)y[Ee11]
1B-83F	X:408583..6625558	T(1;3)SP21
1B4-71D	X:466699..15528103	T(1;3)sc[260-15]	2 stocks
1B9-88A	X:529780..14226397	T(1;3)GA100
1C-56C	X:660484..19329544	T(1;2)DEB5
1D-46E	X:831097..10111219	T(1;2)OR39
1D4-36C	X:962726..17552485	T(1;2)GF326
1E-99A	X:991048..29468940	T(1;3)GA91	FBst0004636
1E1-71C1	X:991048..15298777	T(1;3)N3
1E4-58E	X:1185508..22584651	T(1;2)RC66
1F-99F	X:1254810..30597427	T(1;3)Dem1-8
2A-60D	X:1368553..24747488	T(1;2)OR6
2B-57D	X:1475669..21378741	T(1;2)Su(bw[D])42
2B5-54A	X:1660982..17227747	T(1;2)C123
2C-97A10	X:1972107..26362804	T(1;3)slu
2D3-52F	X:2127280..16231534	T(1;2)KC16
2D3-49A	X:2127280..12530887	T(1;2)GA113
2F-91A	X:2223442..18446794	T(1;3)29A2
3A-97A	X:2328358..26362804	T(1;3)M155
3A5-55A	X:2555321..18013902	T(1;2)N4
3B-39E	X:2666235..21684084	T(1;2)OR28
3C1-98D	X:2804156..28644088	T(1;3)ZWD9
3C-97F	X:2804156..27434247	T(1;3)OR37
3C1-39E2	X:2804156..21592349	T(1;2)w[70k18.1]
3C-57B	X:2804156..21107330	T(1;2)Ee4
3C-38E	X:2804156..20812419	T(1;2)OR84
3C-37C	X:2804156..19217604	T(1;2)OR17
3C-67F	X:2804156..10949869	T(1;3)Dem1-5
3C-28C	X:2804156..7820556	T(1;2)SP64
3C-84A	X:2804156..6896977	T(1;3)z[+]9
3C2-92C2	X:2845023..20037706	T(1;3)w[88c34b]
3C2-91E	X:2845023..19070332	T(1;3)w[78h]
3C2-54E	X:2845023..17811908	T(1;2)w[Ee10]
3C2-70C	X:2845023..14047681	T(1;2)w[Ee11]
3C2-87F	X:2845023..13843302	T(1;3)w[81k11]
3C2-65E5	X:2845023..7156841	T(1;3)w[85e1]
3C2-65B	X:2845023..6608375	T(1;3)w[74c]
3C7-38B	X:3102328..20098210	T(1;2)N[Uc1.26]
3C7-27E	X:3102328..7277616	T(1;2)HF326
3D-67A	X:3312266..9333837	T(1;2)Dem1-6
3F-71E	X:3765078..15674313	T(1;3)OR66
3F-84E	X:3765078..8130321	T(1;3)M159
4B-88A	X:4115669..14226397	T(1;3)OR60	6 stocks
4C-73C	X:4333244..16805146	T(1;3)OR67
4C-42C	X:4333244..6776962	T(1;2)SP84
4C6-71B	X:4517999..15216220	T(1;3)bi[Qd-1E4]
4D-87F	X:4749024..13843302	T(1;3)OR6
5B-35C	X:5697153..15271253	T(1;2)5B;35C
6B-90E	X:6516901..18118267	T(1;3)M150
6C-98C	X:6585391..28383802	T(1;3)OR22
6C-89C1-89C2	X:6585391..6614449	T(1;3)ss[D114.3]
6C-70E-70F	X:6585391..6614449	T(1;3)y[260-21]