Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
90E2-90E2,90D-90E	3R:18045216..18052984	htl	32 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
81-100	3R:3461351..32068446	cant	2 stocks
81-100	3R:3461351..32068446	l(3)cl-R3	2 stocks
86C-100F	3R:10473726..32068446	mei-P44
89C-90E	3R:16576179..18118267	Roof
90C2-91B2	3R:17709569..18510198	P13
90C2-91B2	3R:17709569..18510198	E(faf)E337
90C2-91A2	3R:17709569..18340884	l(3)F34
90C2-91A2	3R:17709569..18340884	l(3)F31
90D-90E	3R:17916874..18118267	SR3-6
90D-90E	3R:17916874..18118267	l(3)B3-3-21	FBst0314084
90D-90E	3R:17916874..18118267	l(3)90DEa
90D-90E	3R:17916874..18118267	l(3)B7-3-32	FBst0314087
90E-91A	3R:18004999..18446794	hopR-90E
90E-90E	3R:18004999..18118267	l(3)90Ea
90E-90E	3R:18004999..18118267	l(3)ry114
90E1-90E7	3R:18004999..18118267	ms(3)90E	2 stocks
90E1-90E3	3R:18004999..18072251	l(3)S032412
90E1-90E2	3R:18004999..18061819	l(3)00643	FBst0011505
90E1-90E2	3R:18004999..18061819	l(3)05697	FBst0011668

*Insertions (cytology mapped)* [Export into hitlist]
90D-90E	3R:17916874..18118267	P{lacW}l(3)90DEa[1]
90E-90F	3R:18004999..18268610	P{Ddc1/4}90EF
90E-90E	3R:18004999..18118267	P{walter}90E
90E-90E	3R:18004999..18118267	P{lacW}S096101b
90E1-90E7	3R:18004999..18118267	P{PZ}ms(3)90E[01651]	2 stocks
90E-90E	3R:18004999..18118267	P{lacW}l(3)S011302[S011302]
90E-90E	3R:18004999..18118267	P{wD}3
90E1--90E3	3R:18004999..18072251	P{lacW}l(3)S145613[S145613]
90E1--90E3	3R:18004999..18072251	P{lacW}l(3)S032412[S032412]
90E1--90E3	3R:18004999..18072251	P{lacW}l(3)S023637a[S023637a]

*Insertions (sequence mapped)* [Export into hitlist]
90E2,90E2_r5	3R:18033411..18033559	P{Switch2}GSG3516	FBst0040281
90E1	3R:18049371..18049408	P{XP}htl[d07110]	2 stocks
90D4	3R:18049413..18049413	P{GT1}htl[BG01331]
90E1	3R:18049438..18049438	PBac{WH}htl[f03388]
90E1	3R:18049449..18049449	P{XP}htl[d07559]
90E1	3R:18050377..18050377	P{XP}htl[d11749]
90E2	3R:18050728..18050728	Mi{ET1}htl[MB01532]	FBst0023332

*Deleted segments (sequence mapped)* [Export into hitlist]
90B3--90F1	3R:17539921..18121962	Df(3R)ED5794
90B6--90E2	3R:17606767..18049371	Df(3R)BSC790	FBst0603623
90C2--91A5	3R:17718110..18399231	Df(3R)ED5807	FBst0313490
90C2--90F6	3R:17755304..18198213	Df(3R)BSC566	FBst0025389
90C6--91A2	3R:17806844..18298400	Df(3R)BSC650	FBst0025740

*Duplicated segments (sequence mapped)* [Export into hitlist]
90D1-90E2	3R:17940029..18047434	Dp(3;2)GV-CH321-22I21	FBst0090208

*Deleted segments (cytology mapped)* [Export into hitlist]
85E15--95C8	3R:9893362..23892547	Df(3R)pug[D-rv7]
86A1--95B3	3R:10201763..23780006	Df(3R)pug[D-rv1]
86B6--94F4	3R:10449672..23476389	Df(3R)pug[D-rv10]
86C3--95B4	3R:10618839..23780016	Df(3R)pug[D-rv2]
86C3--95A5	3R:10618839..23649044	Df(3R)pug[D-rv6]
86C3--94F3	3R:10618839..23454611	Df(3R)pug[D-rv4]
87E8--93C	3R:13364311..21232815	Df(3R)MRS	2 stocks
89B--90E	3R:16027430..18118267	Df(3R)RS4-2
89C1--91A	3R:16576179..18446794	Df(3R)R6-2
89C--90F	3R:16576179..18268610	Df(3R)RK1-15
89D--92A14	3R:16576249..19695282	Df(3R)P47	5 stocks
89D--90E	3R:16576249..18118267	Df(3R)RS4-3
89E--91B2	3R:16736156..18510198	Df(3R)DG2	3 stocks
89E2--90E	3R:16791761..18118267	Df(3R)RK8-7
89E2--90E	3R:16791761..18118267	Df(3R)RK8-21
89E2--90E	3R:16791761..18118267	Df(3R)RS2-78
89F--90F	3R:17123623..18268610	Df(3R)DG3
90C--91D	3R:17663399..18945258	Df(3R)SMG39
90C2--91B2	3R:17709569..18510198	Df(3R)P14	FBst0003010
90C2--91A2	3R:17709569..18340884	Df(3R)sr300.24
90C2--90F7	3R:17709569..18222501	Df(3R)sr100.394
90C3--91B11	3R:17755738..18672273	Df(3R)fru[w10]
90C4--91F11	3R:17770387..19225415	Df(3R)fru[w25]
90C7--91B2	3R:17826889..18510198	Df(3R)gl-BX10
90C7--90E2	3R:17826889..18061819	Df(3R)sr1461
90C9--90F11	3R:17875021..18268610	Df(3R)BX6
90D1--90E2	3R:17916874..18061819	Df(3R)sr16	2 stocks
90D2--92A2	3R:17968014..19373735	Df(3R)Delta1
90D2--91A6	3R:17968014..18415959	Df(3R)sr300.101
90D2--90F6	3R:17968014..18198655	Df(3R)DG4	2 stocks
90D3--91B8	3R:17968024..18672273	Df(3R)gl-BX12
90E1--91C7	3R:18004999..18793975	Df(3R)DG1
90E1--90E7	3R:18004999..18118267	Df(3R)Exel6287
90E2--91F	3R:18033409..19261019	Df(3R)DG5

*Duplicated segments (cytology mapped)* [Export into hitlist]
83C--95C	3R:5688967..23940806	Dp(3;3)M37
83E1--100D2	3R:6192284..31837725	Dp(3;Y)Tpl7
83E1--99E	3R:6192284..30323585	Dp(3;Y)Tpl11
87C--91A	3R:12535256..18446794	Dp(3;3)SMG37
87E8--93C	3R:13364311..21232815	Dp(3;3)MRS	2 stocks
88A6--90F2	3R:14058931..18148075	Dp(3;3)E(var)88D74
88B--92D	3R:14226398..20259177	Dp(3;3)C123.3	3 stocks
88C--90F	3R:14415068..18268610	Dp(3;3)C6
88D--100B	3R:14675783..31275051	Dp(3;3)SMG35
88E5--90F11	3R:15248741..18268610	Dp(3;3)C1
88F--90E	3R:15316332..18118267	Dp(3;3)M42
89D--93A	3R:16576249..20983973	Dp(3;3)C123.6
89D--92A14	3R:16576249..19695282	Dp(3;3)P47
89D--90E	3R:16576249..18118267	Dp(3;3)M43
89E--93A	3R:16736156..20983973	Dp(3;3)M40
90A--95A1	3R:17256344..23546750	Dp(3;3)M95A[+]33a
90A--95A1	3R:17256344..23546750	Dp(3;3)M95A[+]33
90A--90F	3R:17256344..18268610	Dp(3;3)DG
90E--98B	3R:18004999..28082526	Dp(3;3)M95A[+]13	2 stocks

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
81-99E	3R:3461351..30323585	In(3R)D116.8
81-99B	3R:3461351..29775722	In(3R)CA52
81-98E	3R:3461351..28855898	In(3R)HR13
81-98C	3R:3461351..28383802	In(3R)CA23
81-98C	3R:3461351..28383802	In(3R)CA33
81-95F	3R:3461351..24380882	In(3R)284
81F-95D	3R:3461351..24063100	In(3R)253
81F-93E	3R:3461351..21645979	In(3R)C289
81-92A	3R:3461351..19695282	In(3R)SM26
82D-98E	3R:4657100..28855898	In(3R)IC67-327
82F-92D	3R:5101129..20259177	In(3R)SM23
82F-92B	3R:5101129..19971232	In(3R)Mg145
83-99	3R:5364156..30597427	In(3R)LD30
83D-96A	3R:5948971..24840518	In(3R)Mg140
83D-94E	3R:5948971..23363938	In(3R)SM22
84B-97A	3R:6896978..26362804	In(3R)Mg146
84B-97A	3R:6896978..26362804	In(3R)Mg147
84B1-95F	3R:6896978..24380882	In(3R)Scr[18]
84B-92D	3R:6896978..20259177	In(3R)Dem1-9
84C-93D3	3R:7097477..21290337	In(3R)e[H3]
84D-91E	3R:7174723..19070332	In(3R)TC
84E-99E	3R:7760099..30323585	In(3R)AL14
84E-91C	3R:7760099..18793975	In(3R)UF
84F-91D	3R:8130322..18945258	In(3R)ZP28
85A-96E	3R:8383248..25712016	In(3R)V103
85D-95E	3R:9202521..24189602	In(3R)K19
85D-94E	3R:9202521..23363938	In(3R)Dem1-8
85E-91A	3R:9600374..18446794	In(3R)AL15
85F-97F	3R:9907979..27434247	In(3R)IC67-79
86B-98E	3R:10335172..28855898	In(3R)Dem3-7
86B-92F	3R:10335172..20794570	In(3R)CW
86D-97A	3R:11013214..26362804	In(3R)Nel-D
86E-98F	3R:11284446..29184631	In(3R)Mg139
86E-97C	3R:11284446..26733804	In(3R)St-E
86E-92F	3R:11284446..20794570	In(3R)BoI
86F-100E	3R:11785613..32068441	In(3R)M
86F-98F	3R:11785613..29184631	In(3R)IW12
86F-96A	3R:11785613..24840518	In(3R)PS32
87A-100F	3R:11871713..32068446	In(3R)St-C
87B-100F	3R:12147055..32068446	In(3R)IW13
87B-92F	3R:12147055..20794570	In(3R)PS33
87B-92F	3R:12147055..20794570	In(3R)KD2
87C-98F	3R:12535256..29184631	In(3R)Mg157
87C-95A	3R:12535256..23714950	In(3R)KOG-M
87C-92C	3R:12535256..20096867	In(3R)Dem1-13
87D-93A	3R:12773542..20983973	In(3R)IW14
87D-92F	3R:12773542..20794570	In(3R)K20
87D-92C	3R:12773542..20096867	In(3R)ZP25
87E-97A	3R:13164290..26362804	In(3R)Mg21
87E-95A	3R:13164290..23714950	In(3R)SM24
87E-94E	3R:13164290..23363938	In(3R)Alt-6
87E-94A	3R:13164290..22474684	In(3R)SM29
87E-92E	3R:13164290..20525400	In(3R)PS
87F-91F	3R:13484494..19261019	In(3R)K-g
87F-90F	3R:13484494..18268610	In(3R)PS34
88-97A	3R:13843303..26362804	In(3R)SM27
88A-94A	3R:13843303..22474684	In(3R)SM30
88A-93C	3R:13843303..21232815	In(3R)K25
88A-93C	3R:13843303..21232815	In(3R)ZP29
88C-98F	3R:14415068..29184631	In(3R)PS35
88C-96E	3R:14415068..25712016	In(3R)PE
88C-96D	3R:14415068..25439751	In(3R)KH
88D-94A	3R:14675783..22474684	In(3R)KI
88D-94A	3R:14675783..22474684	In(3R)PS38
88D-90F	3R:14675783..18268610	In(3R)PS37
88E-93F	3R:15054626..22019295	In(3R)AL16
88E-93A	3R:15054626..20983973	In(3R)IW15
88E-90F	3R:15054626..18268610	In(3R)Mg141
89A-99D	3R:15623020..30152942	In(3R)St-M
89A-92A2	3R:15623020..19373735	In(3R)Delta[KX15]
89A-90E	3R:15623020..18118267	In(3R)IB
89B-98B	3R:16027430..28082526	In(3R)P33
89B-96A	3R:16027430..24840518	In(3R)PH
89B9-97D	3R:16229403..27054991	In(3R)sbd[l]
89B9-91D	3R:16229403..18945258	In(3R)pnr[VX2]
89C-96A	3R:16576179..24840518	In(3R)PS47
89C2-96A19	3R:16576189..24754796	In(3R)ven
89D-92A	3R:16576249..19695282	In(3R)89D;92A
89E-98B	3R:16736156..28082526	In(3R)89E-98B
89E-93A	3R:16736156..20983973	In(3R)Mg20
89E2-99F	3R:16791761..30597427	In(3R)abd-A[M1]
89E2-96A	3R:16791761..24840518	In(3R)iab3[793]
89E2-93F	3R:16791761..22019295	In(3R)iab2[S3]
89E3-100C	3R:16847366..31613779	In(3R)Abd-B[iab9-48]
89E5-96A13	3R:16951015..24654655	In(3R)m53e
89F-96A	3R:17123623..24840518	In(3R)Mg143
89F-95A	3R:17123623..23714950	In(3R)89386
90B-98A	3R:17436925..27670954	In(3R)St-H
90B-97D	3R:17436925..27054991	In(3R)Dem1-10
90D-93B	3R:17916874..21124232	In(3R)KJ
90E-99A	3R:18004999..29468940	In(3R)Alt-7
90E-93A	3R:18004999..20983973	In(3R)ID

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
86D-90F	3R:11013214..18268610	Tp(3;3)kar[51]
90E2-90E7-101F	3R:18033409..18061819	T(3;4)ci[+]16