Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
95D9-95D10,95D5-95D9,95D5-95D9,95D5-95D9	3R:24043056..24048265	Rox8	15 stocks
95D10-95D10,95D5-95D6	3R:24047790..24049168	CG5986	6 stocks
95D10-95D10,95D10-95D11,95D10-95D11	3R:24049180..24050782	Atg6	9 stocks
95D10-95D10	3R:24050783..24053592	Pisd	9 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
81-100	3R:3461351..32068446	cant	2 stocks
81-100	3R:3461351..32068446	l(3)cl-R3	2 stocks
86C-100F	3R:10473726..32068446	mei-P44
95A-97A	3R:23509790..26362804	M(3)96CF

*Insertions (cytology mapped)* [Export into hitlist]
95--96	3R:23509790..26106891	P{lacW}Y237
95D-95D	3R:23940807..24063100	P{BS2.7A}8
95D-95D	3R:23940807..24063100	P{lacW}l(3)S038307[S038307]
95D-95D	3R:23940807..24063100	P{lacW}S070005b
95D9-95D10	3R:24034450..24053906	TI{TI}Rox8[Δ]	FBst0092836
95D10-95D10	3R:24046719..24053906	P{EP}Atg6[G3772]
95D10-95D10	3R:24046719..24053906	P{EP}Atg6[G6854]
95D10-95D10	3R:24046719..24053906	TI{TI}Atg6[1]
95D10-95D10	3R:24046719..24053906	P{EP}Atg6[G6654]
95D10-95D10	3R:24046719..24053906	P{RS5r}5-SZ-3927

*Insertions (sequence mapped)* [Export into hitlist]
95D10_r5	3R:24046744..24046744	P{GSV1}Rox8[s-572]	FBst0043531
95D10-95D10	3R:24046745..24046745	P{GawB}Rox8[NP0528]	FBst0302509
95D10	3R:24047121..24047121	P{GSV6}Rox8[GS17980]	FBst0320719
95D10	3R:24047349..24047385	P{XP}Rox8[d04242]
95D10	3R:24047385..24047385	P{EPgy2}Rox8[EY04187]	FBst0020002
95D5-95D5	3R:24047392..24047392	P{EP}CG5986[EP3278]
95D5-95D5	3R:24047460..24047460	P{EP}Rox8[EP3338]
95D10	3R:24047476..24047476	PBac{RB}Rox8[e04432]
95D10-95D10	3R:24047645..24047645	P{wHy}Rox8[DG08410]
95D10	3R:24047720..24047720	PBac{WH}Rox8[f00981]
95D10	3R:24047720..24047720	PBac{WH}Rox8[f01864]
95D10	3R:24047989..24047989	PBac{RB}Rox8[e01157]
95D10_r5	3R:24047990..24047990	PBac{SAstopDsRed}LL06364	FBst0320405
95D10	3R:24048239..24048239	P{EPgy2}Rox8[EY02351]	FBst0015865
95D10	3R:24048529..24048529	P{GSV6}GS10493	FBst0310608
95D10	3R:24048548..24048548	P{GSV2}GS5023
95D10-95D10	3R:24050911..24050911	P{PZ}Atg6[00096]	FBst0011487
95D10	3R:24050972..24050972	P{GSV7}GS21499	FBst0321451
95D10_r5	3R:24051509..24051509	PBac{SAstopDsRed}LL05324	FBst0320179
95D10	3R:24051634..24051634	P{GSV7}GS21212	FBst0321338
95D10	3R:24051646..24051646	P{GSV6}GS10752	FBst0310802
95D10	3R:24051648..24051648	P{GSV6}GS11936
95D10	3R:24051648..24051648	P{RS5}Pisd[5-SZ-3927]	FBst0328237
95D10	3R:24051648..24051648	P{GSV1}Pisd[GS3199]
95D5	3R:24051649..24051649	P{EPgy2}Pisd[EY03559]	FBst0015442
95D10	3R:24051655..24051655	P{GSV6}GS17734	FBst0320642
95D10	3R:24051669..24051669	P{GSV2}GS51091
95D10	3R:24051798..24051798	P{GSV2}GS50188	FBst0322248
95D10-95D10	3R:24052654..24052654	PBac{IT.GAL4}Pisd[1035-G4]	FBst0063973

*Deleted segments (sequence mapped)* [Export into hitlist]
95E7--96A18	3R:22961926..24753510	Df(3R)slo3	FBst0307396
95A7--95E1	3R:23669652..24105059	Df(3R)ED10894	FBst0313418
95B1--95D11	3R:23774151..24057387	Df(3R)ED6155	FBst0313403
95C8--95E1	3R:23887305..24105059	Df(3R)ED10893	2 stocks
95D1--95F8	3R:23943077..24271218	Df(3R)ED6168	FBst0313328
95D1--95D11	3R:23943077..24057387	Df(3R)ED6150	FBst0313402
95D8--95E1	3R:24031427..24141369	Df(3R)Exel6197	FBst0007676
95D10--96A7	3R:24051648..24543943	Df(3R)ED6187	2 stocks

*Deleted segments (cytology mapped)* [Export into hitlist]
95A--97A	3R:23509790..26362804	Df(3R)Su9
95A5--95D11	3R:23646428..24063100	Df(3R)mbc-R1	2 stocks
95A5--95D11	3R:23646428..24063100	Df(3R)mbc-R.1
95D7--95F15	3R:24016814..24380882	Df(3R)crb-F89-4	2 stocks
95D7--95F15	3R:24016814..24380882	Df(3R)crb-F89-30
95D9--95D10	3R:24034450..24053906	Df(3R)spas[5.75]

*Duplicated segments (cytology mapped)* [Export into hitlist]
83E1--100D2	3R:6192284..31837725	Dp(3;Y)Tpl7
83E1--99E	3R:6192284..30323585	Dp(3;Y)Tpl11
88D--100B	3R:14675783..31275051	Dp(3;3)SMG35
90E--98B	3R:18004999..28082526	Dp(3;3)M95A[+]13	3 stocks
91B2--97F	3R:18476184..27434247	Dp(3;3)M96C[+]20
92E--98C	3R:20259178..28383802	Dp(3;3)M95A[+]30
92E--98C	3R:20259178..28383802	Dp(3;3)M95A[+]30a
92E1--98A	3R:20259178..27670954	Dp(3;3)M95A[+]11
92E1--96A	3R:20259178..24840518	Dp(3;3)H[+]
92E1--96A1	3R:20259178..24420760	Dp(3;3)M95A[+]8
93D--95D	3R:21232816..24063100	Dp(3;3)M95A[+]7
93D5--99B1	3R:21314671..29505909	Dp(3;3)M95A[+]12
93F--96B	3R:21645980..25101913	Dp(3;3)M95A[+]6
94A1--96F	3R:22019296..26106891	Dp(3;3)M96C[+]19
94B--96A	3R:22474685..24840518	Dp(3;3)M47
94C7--98A	3R:22786737..27670954	Dp(3;3)M96C[+]14
94C7--97D	3R:22786737..27054991	Dp(3;3)M96C[+]21
94D--99E	3R:22827296..30323585	Dp(3;3)M95A[+]16
94D--96E	3R:22827296..25712016	Dp(3;3)M95A[+]13a
94D--96E	3R:22827296..25712016	Dp(3;3)M95A[+]23
94D--95E	3R:22827296..24189602	Dp(3;3)M95A[+]26
94D4--95D11	3R:22924446..24063100	Dp(3;3)M95A[+]h66
94D5--96A13	3R:22961926..24654655	Dp(3;3)M95A[+]h22
94F--96B	3R:23363939..25101913	Dp(3;3)M45
95A1--98B	3R:23509790..28082526	Dp(3;3)M95A[+]9
95A1--96B1	3R:23509790..24870849	Dp(3;3)M95A[+]5
95B--97A	3R:23714951..26362804	Dp(3;3)M96C[+]9

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
81-99E	3R:3461351..30323585	In(3R)D116.8
81-99B	3R:3461351..29775722	In(3R)CA52
81-98E	3R:3461351..28855898	In(3R)HR13
81-98C	3R:3461351..28383802	In(3R)CA33
81-98C	3R:3461351..28383802	In(3R)CA23
81-95F	3R:3461351..24380882	In(3R)284
81F-95D	3R:3461351..24063100	In(3R)253
82D-98E	3R:4657100..28855898	In(3R)IC67-327
83-99	3R:5364156..30597427	In(3R)LD30
83D-96A	3R:5948971..24840518	In(3R)Mg140
84B-97A	3R:6896978..26362804	In(3R)Mg146
84B-97A	3R:6896978..26362804	In(3R)Mg147
84B1-95F	3R:6896978..24380882	In(3R)Scr[18]
84E-99E	3R:7760099..30323585	In(3R)AL14
85A-96E	3R:8383248..25712016	In(3R)V103
85D-95E	3R:9202521..24189602	In(3R)K19
85F-97F	3R:9907979..27434247	In(3R)IC67-79
86B-98E	3R:10335172..28855898	In(3R)Dem3-7
86D-97A	3R:11013214..26362804	In(3R)Nel-D
86E-98F	3R:11284446..29184631	In(3R)Mg139
86E-97C	3R:11284446..26733804	In(3R)St-E
86F-100E	3R:11785613..32068441	In(3R)M
86F-98F	3R:11785613..29184631	In(3R)IW12
86F-96A	3R:11785613..24840518	In(3R)PS32
87A-100F	3R:11871713..32068446	In(3R)St-C
87B-100F	3R:12147055..32068446	In(3R)IW13
87C-98F	3R:12535256..29184631	In(3R)Mg157
87E-97A	3R:13164290..26362804	In(3R)Mg21
88-97A	3R:13843303..26362804	In(3R)SM27
88C-98F	3R:14415068..29184631	In(3R)PS35
88C-96E	3R:14415068..25712016	In(3R)PE
88C-96D	3R:14415068..25439751	In(3R)KH
89A-99D	3R:15623020..30152942	In(3R)St-M
89B-98B	3R:16027430..28082526	In(3R)P33
89B-96A	3R:16027430..24840518	In(3R)PH
89B9-97D	3R:16229403..27054991	In(3R)sbd[l]
89C-96A	3R:16576179..24840518	In(3R)PS47
89C2-96A19	3R:16576189..24754796	In(3R)ven
89E-98B	3R:16736156..28082526	In(3R)89E-98B
89E2-99F	3R:16791761..30597427	In(3R)abd-A[M1]
89E2-96A	3R:16791761..24840518	In(3R)iab3[793]
89E3-100C	3R:16847366..31613779	In(3R)Abd-B[iab9-48]
89E5-96A13	3R:16951015..24654655	In(3R)m53e
89F-96A	3R:17123623..24840518	In(3R)Mg143
90B-98A	3R:17436925..27670954	In(3R)St-H
90B-97D	3R:17436925..27054991	In(3R)Dem1-10
90E-99A	3R:18004999..29468940	In(3R)Alt-7
90F-96A	3R:18118268..24840518	In(3R)PI
91B-97C	3R:18446795..26733804	In(3R)ZP24
91B-96B	3R:18446795..25101913	In(3R)C208
91D-98B	3R:18793976..28082526	In(3R)Mg136
92-97	3R:19261020..27434247	In(3R)CA35
92B-98C	3R:19695283..28383802	In(3R)SM25
92C-99F	3R:19971233..30597427	In(3R)IW22
92C-96A	3R:19971233..24840518	In(3R)IW16
92C-96A	3R:19971233..24840518	In(3R)92C;96A
92D-100A	3R:20096868..30928228	In(3R)92D;100A
92D-98F	3R:20096868..29184631	In(3R)89300
92E-100E	3R:20259178..32068441	In(3R)92E-100E
92E-97E	3R:20259178..27264826	In(3R)AL17
92E-97C	3R:20259178..26733804	In(3R)KK
92E-97A	3R:20259178..26362804	In(3R)IC
93A-97A	3R:20794571..26362804	In(3R)Mg148
93D-98F	3R:21232816..29184631	In(3R)PS49
93D-98F	3R:21232816..29184631	In(3R)KOG-N
93D-98B	3R:21232816..28082526	In(3R)St-Q
93D3-95E	3R:21281403..24189602	In(3R)100.265
93E-100F	3R:21400810..32068446	In(3R)ML193
93E-97D	3R:21400810..27054991	In(3R)IW17
93F-99C	3R:21645980..29957664	In(3R)V16
93F-98C	3R:21645980..28383802	In(3R)Dem1-14
94A-98C	3R:22019296..28383802	In(3R)ZP30
94C-99F	3R:22666855..30597427	In(3R)VV10
94E-98D	3R:23114713..28644088	In(3R)C13
94E-97A	3R:23114713..26362804	In(3R)IA
95D-98F	3R:23940807..29184631	In(3R)KOG-O