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General Information
Symbol
Dmel\RH08077
Species
D. melanogaster
Name
RH08077
FlyBase ID
FBcl0242210
Feature type
Computed gene(s)
 
Collection Status
DGC gold BDGP
Known Problems
none
FlyBase assessment
    Library
    RH_cDNA
    • RH cap-trapped cDNA library of D. melanogaster, iso-1 strain, adult head.
    Strain
      Vector
      Tissue Source
      Stage
      Tissue/Position (including subcellular localization)
      Reference
      Sequence Data of the Insert
      Full Length Sequence
      Total bases
      5,460
      NCBI
      Full Length sequence dataSequence Downloader
      GGACTGAACATATGTTCCGGGGAGAGTGGCTGCGATTTCGCGTCGGTAAAAATAGCAAATACTCGTTAATGTGCTGTGGG
      AACGCTTCCTCCCCGGCCCCAAAGTGGCCCCGAAGAAAGTGAGCAAATGTGCGCGCCGCAAGATAGTCGCCGCCGAACAA
      ACGATAGTGACGAAATGATTTAATTCAACTACCAGCACTCCCGCAAATACGATGAGTATGTCGCGCGGCGGCAACACAAC
      TCTGGACTTGCAGCCGCTCCTGGCGGAGAGCGATGTCGGAAACAGGGAGCTGGAGGAGAAGATGGGCGGATCGGCGGATC
      GGTCATCGCTGCTCGATGGATCCGGTTCGAAGGAGCTGAGTCACCGGGAACGCGAGGACTCGGCGTTGTTCGTCAAGAAG
      ATCGGGAGCGCCTTGTTCTATGGCTTGTCCTCCTTCATGATTACGGTGGTAAACAAGACGGTGCTTACCTCCTACCACTT
      CCCCTCGTTCCTGTTCCTCAGCCTCGGGCAACTTACTGCTAGCATTGTGGTCCTGGGCATGGGCAAGCGCCTGAAATTGG
      TGAACTTTCCCCCTCTGCAGAGGAATACCTTCGCCAAGATCTTTCCGCTGCCACTGATATTTCTGGGAAACATGATGTTT
      GGACTGGGTGGCACAAAAACCTTGAGTCTGCCCATGTTCGCAGCCCTACGACGCTTCTCTATCCTGATGACCATGCTGCT
      GGAGCTCAAGATCCTGGGACTGCGACCTTCGAATGCGGTTCAGGTCAGCGTATACGCAATGATCGGTGGAGCGCTGCTGG
      CCGCCTCTGATGATCTGTCCTTCAACATGAGGGGCTACATCTATGTGATGATCACTAACGCCTTGACCGCCTCGAATGGC
      GTATATGTGAAGAAAAAACTCGACACCTCGGAGATCGGAAAGTACGGCCTAATGTACTACAACTCGCTGTTTATGTTTCT
      GCCTGCCCTGGCCCTCAACTATGTTACAGGGAATCTAGATCAGGCGCTGAACTTTGAACAATGGAATGACTCAGTGTTTG
      TGGTGCAGTTCCTGCTCAGTTGCGTTATGGGTTTCATCCTATCGTACAGCACCATCCTGTGCACGCAATTCAACTCGGCG
      CTGACCACCACCATTGTGGGATGCCTGAAAAACATCTGCGTAACATATCTGGGCATGTTCATTGGAGGCGACTACGTCTT
      CTCGTGGCTCAACTGTATTGGGATCAACATCAGCGTGCTGGCTAGTCTGCTCTACACGTACGTCACTTTTCGGCGGAAGC
      GGGCTCCCGATAAGCAGGACCACTTGCCCAGCACCCGCGGCGAGAATGTCTAGCTTCATCTTAGCTCAAACTCAAGCCAA
      AGCCATACGATATGTTAAGTGTATTCCGTACTGTGTACTTCAATTGCGATCTGCGATTCGCGACAACGTTCGTATTTGAT
      TTTCCTACAACCACACAGCGCATCGTCTCTGTACATATATCTAGCTATATTTCTATAAAAATGTAATTTAGCAATTATGT
      AATTTTAATCACTTTGTACATTTGTCTGCATGCAACTGTTTCCTGCATCGAAAGTGTCATAAGAAATAGAAATACACAGG
      CTTCCACTCCTCCGCCTACGGAATGGGTGGGCCAGATAAACAATTGTGTTCCGTCTTCTGTTCCATTTTGGGTCATAATT
      GATAAGATTGCCTGCTCCGATAAGGCATACAACTCGGACGTTGCAAATTAAGCAGACATCTTGCTCTCTCTCACGTGCTT
      TTCTAATTACTTTTTTGTGTAAAATAAGTAATGTAGTGGAACTGCGTTGTGGGATTTGCCAATTACTTGTGCTTAATAGG
      TTGTTTATCTATTCTGAGCAAACACGTTGGCGCCTTGAGATTAATACAAAACAAAGTACTGCATTGCCGGACAATCCAGC
      AGCGTCATCACTCAACATCACTATGTAAAAAGCTTTGGATAGGTTGCTCGATTACTGATTACTCTATATCAAAATTTTGG
      GTTTTTATGTTGAATAAAAAAAAAACAATATTATCAGCCAAGAACGTGATTGCGAGTGGTGATAGTATTTTTTAGAATAG
      TACGCCTTCCGATATTTTGTGTTATTTTCCGTTTCATTTGGTAATTGCCTCAAAAGGCTTTTGTTTAGATTGTAGTGCTG
      AAGAATCTTTTTCTTTGTCTTAAAAGTAAATAAATTTGCGCAGCTGAAACTGTTTTGTTTTAGCGAAATAAGTATGTATA
      CTTTAAGATGGCTATCTATTTTCTTAGAATTAGATTTTACTTGGTAACTGCCTAGTTCCTTATCAAAAGATTAAGATTTA
      AATATCCCACATATATGTTGCTAAACTTATCTTTTAAATGGTGACTACTCATTTATCCAAAGAAACAACAATGACGACAT
      TGAATCGGGTATAAAGCGGCAGAATGAGGTGCTAGTGCCCCGGCAGCACTTTGTTTGGGTTATTTTGGGAGCCCGCAATA
      TATGATGGGCGGTGGTGAAGTGAGGGATTCGGAGTGGGGACAGGTAATGAGGAAGCCGAAACAGGTTTGCACAGACTTAG
      CCGTGCGGTGAGGTAAATTGTTAGTCAGCATCAGCCCCGACCGCGTACCCACATTATGGACAAATTGTTTGCTCATATTC
      GCCGCTATTGAAAGTGGGCACGTACATACGTACGTATGGCTCGAGGGACCAGCTTTAACCGAAGACAGGTAGTCAGGGTC
      ATGTTTGTGTGCGACGATGATGATGATGATAATAATAATGTAATGATGATGATGCCGACGATCGTGCTGATAAGGTCACC
      ACCGGGTGCACCTCCCCATATCTCCTCTATGAATCCACAGATCATCATGATGCAACGCTGTTTGCGTCTCCAAAAGCCGC
      TGGCCCTACGACGAGGCCTTCGCTTGGCCCAGGCTAATAGCCAAGCGGTGGCCACAGAAGCACCCGAGGCGGAACCTCTG
      GATGCCTTCGAGCGTCAGTACCTCAAGGAGCGAATCGAGATATCGCCCTTCCAGCGGCTGTTCCTGGGGGCAGGATCCTC
      CATTGCCGCGCTCTTGAATCCAAGACGTCATGACATGATCGCCTGTTTGGGTGAGACGACTGGAGAGGATGCTCTATGGA
      CAATTTTGGACACCATGCAAGCCAGCGAGGAGGGTCAGCGCATCATGGCTGATAAGCCCCGCATCCACACCAGCACCATT
      GACTTCAAGTATCTGGAAACTTTGCCACCGGATACCTTTGGAGCCGCTTACGTAAAGTTTCTGAAAGATAATCAAGTCAC
      GCCGGACAGTCGCATGGCCGTGCGGTTTTTGGAGGACCCGAAGTTGGCCTACTTGATGACGCGATATCGCGAATGCCACG
      ACCTAATCCACACGGTGCTGGACATGCCCACCAATATGCTGGGCGAGGTGGCTGTCAAGTGGGTGGAGGCTCTGAACACG
      GGCCTGCCCATGTGCTACGGTGGTGCGGTATTCGGAGCAGTTCGCCTACGTCCCAAGCAGCGGCGTGCGTACTTGAAGCA
      TTACTTGCCGTGGGCCCTGGAGAACGGCAAGCGGACCAAGCCCTTGATGCCCGTCTACTGGGAGAAGCGCTGGGAGCAGA
      ACATCCACGAGCTGCGCTCCGAATTGGGCATTACTGTGCTGAATAAAGCTTGATAAGGCTGTTTATTTTTAAGCCCATTT
      TTAAATTTTGAACTTATCGACTATTAGTATCGAGCAGTCCTATCGCGATCGTAGAATTGTGATCTGGCAACGTCGTGTAA
      CGTCGAACTGATTGTAGATGTTTCCACTTACAAAGAAAATTATTATTTGATTATAGCAATAAATATAAAAGTTGATGCAG
      TTTGCCGAAATAATTTAAAGATCGAGAAAAAAAACTTTATATTATTTTTTATATTAGAATTTGAGCACAGTGAGAACAGT
      CAATTTCCGCGAATGATCGCATCAAAACTTAACCCGATGTGGCAACTCCACTCGTTCTGTTTGCATTTGCTGATGTGTTG
      TTTTGTTTTTTTCGGTCGATCGTCTTAATGGCTAATTATCCCTAAGTTAAACACCATGACTGAGAAATTCAATGGTTTTA
      GCCACGACGAGATCCTCAAGATAACGGGCGTGAAGGAGGGCGGTGTGGGCAAAAGGCCTGCGAGTCTGGAAGCAGGTTAG
      ATCACTAAGCATGAACCCCAAAGCGTGTAAACAATTATCTGTTTATAATAAAAACCTTTGCCTATGTGTGCGTGAGCAGC
      GAAGCCGGCGCTCCGAATTCAACCCGGCATTCGGCGTATGCCCGATAAGATCTTCCGGCAAGCGGATCAGTTACGGAAGC
      AGCAGCAGCAGCAACCACAGCAACCCATACAAAAACCGGATGTGGCGAAGAAGACCAAATCGGGAACAGCGACTCCCACG
      GAAAAGCCACCGACTCCCACTCCCGCGGCGGAGGATGACGTAGCGAACGGATCGCTAAATTTGGACCGCCCACTCTCCGA
      TTCATTAATAGAGGCACTCTACCATGGAAATGCTACAGCTAGAGATAAGAAAACTCCCGCCACGTATGCAGATGCTGAAA
      CAACGTCCACCGACGACAGTTCGATTCTGAAGATCAGCGGCGGTGACAGCCAGACAACTAGCTCCACCGATGATGGCAGC
      ATCCTGCCGAGTACCCAGGACACCTCGCCGCGGGAGCGCCTCAACACAGACTCACCTTTCAAGGGCATCTCGCTGAAGGA
      CTTCGAACAGCATCGCCGCATGATCGAGGAGCAGAACAAGCAGAAGAAGCAAATGCTGTACCAGGCCATCGAGCAGCACA
      CCCAGAAGACGGCGGCGGAGTCGCGAAAGATCGAGGAGATCCGCCACGAGCTGTCCAAGCTGGAAAGTGATCTGGCCGTG
      GACGTAGCTCTGCTGAGGAAGCAGATCGACAATGCCTGCATACATTTTGCCAATGTAGAAAAACAATACGTCAAAATCGA
      GGCTCAGTTCTTGCGGGCCAAGATAGAGCTGCACAATGCATCCGAAAAGAAGGAGCTGCTCACAGAGCATCTATGCACAG
      TAATTGCCCACAACGAGGACCGTAAAGCGCAAAAGCTTACTGAATTGATGCAGAAAGTGGGTCTGTCGCCAACCGATGAT
      TGCCAACCGATTGATTTAACTCAACAAAGCCCCTAAACACGTAACACGTGTAAATTCAACTTCAAATCATCTTTAATTCG
      AATTTTCAGCGGTGTTTGCTTAACTTGACCAAAAGTATCAATTTGTTGCTCCCTGAAATATTATATTTTTTAAATTGGAA
      AATTATGTACTAATTTTCCATCGGCTATATTGTATTGGAATTGTAAACATAAAACACGCCTGAAATATGTCGAATGCGCT
      CTGATATTAGCATGTAATTAATGTTCATAGCCTAAGTGATGAAGTGCAAATTGCAAATAAAATATGTATATGTTATGTGT
      AAAGAAAAAAAAAAAAAAAA
      
      Library Information (1)
      Library: RH_cDNA
      Description
      Cloned cDNAs prepared from polyadenylated RNA isolated from adult heads.
      Sample preparation
      For the RH cDNA library, adult heads were collected from an isogenic y; cn bw sp (iso-1) strain.
      Protocol
      RNA was polyA+ selected twice (RNA made by L. Hong). cDNA was synthesized by priming with the oligo(dT) primer adapter (5'-GAGAGAGAGAGGATCCAATACTGGAGAGTTTTTTTTTTTTTTTTVN-3'). The first strand was synthesized in presence of trehalose, which increases the full-length cDNA synthesis (Carninci, P. et al. 1998. Proc. Natl. Acad. Sci. U.S.A. 95(2): 520-524; Carninci, P. et al. 1999. Methods Enzymol. 303: 19-44). Full-length cDNA was selected with the biotinylated cap-trapper (Carninci, P. et al., Genomics 37: 327-336). A linker was then ligated to the single-strand cDNA following the published protocol (Shibata, Y., et al., Biotechniques, in press). Subsequently, the cDNA was normalized by using RoT=1.0 as published (Carninci, P., et al., Genome Res. 10: 1617-1630). Second strand cDNA was primed with the (5'-AGAGAGAGAGCTCGAGCTCTAATAAGGTGACACTATAGAACCA-3') primer. After restriction digestion of the hemimethylated cDNA with BamHI and XhoI, thecDNA was cloned in the lambda FLC-I vector. Subsequently, the library was bulk-excised into pFLC-I plasmid as described (Carninci, P., et al., Genomics, 2001, 77:79-90 ). cDNAs were transformed into DH5-alpha TonA strain.
      Comment
      Reported As
      Symbol Synonyms
      RH
      RH_cDNA
      Riken head library
      References (1)
      Research paper (1)
      Stapleton et al., 2002, Genome Res. 12(8): 1294--1300
      The Drosophila Gene Collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes. [FBrf0152058]
      External Crossreferences and Linkouts ( 2 )
      Crossreferences
      Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
      Linkouts
      DGRC - Stock center for Drosophila cDNAs, vectors, and cell lines
      Synonyms and Secondary IDs (0)
      Reported As
      Symbol Synonym
      Secondary FlyBase IDs
        References (0)