• Home
• Tools
  • Tools Overview
  • Query Tools

    
    • QuickSearch
    • QueryBuilder
    • TermLink
    • CytoSearch
    • RNA-Seq Search
    • Interactions Browser
    • ImageBrowse
    • Find A Person
    • Google™ FlyBase
  • Genomic/Map Tools

    
    • BLAST
    • GBrowse
    • GBrowse 2 Beta
    • CytoSearch
    • Feature Mapper
    • Aberrations Maps
    • Chromosome Maps
    • Coordinates Converter
  • Retrieve/Convert

    
    • Batch Download
    • Coordinates Converter
    • ID Converter
  • Data Submission

    
    • Fast-Track Your Paper
    • Submit Personal Comm
    • Add A New Person
    • Update Person Info
  • People

    
    • Find A Person
    • Add A New Person
    • Update Person Info
• Files
  • Files Overview
  • Current release
  • Archived releases
  • Map Conversion
  • FTP site:
  • Releases (FTP)
  • Genomes (FTP)
• Species
  • Phylogeny
  • Sequenced Species
  • Synteny Table
  • Color Illustrations
  • Abbreviations
• Documents
  • About FlyBase
  • Reference Manual:
  • Sections
  • Contents
  • Nomenclature
  • Release Notes
• Resources
  • All Resources
  • Model Organisms
  • Stock Collections
  • Vectors & Constructs
  • Other links:
  • BDGP
  • DGRC
  • DIS by issue
  • FlyExpress
  • Interactive Fly
  • modENCODE
  • Textpresso for Fly
• News
  • News
  • FlyBase Forum
  • FlyBase Positions
  • Meetings
  • Courses
  • Fly Board
  • White papers
  • Funding
  • bionet.dros
• Help
  • Google™ FlyBase
  • Site Map
  • FAQs
  • FlyBase Guides
  • Video Tutorials
  • Report help
  • New to Flies
  • Pers. comm.
  • Author guidelines
  • Contact FlyBase
• Archives
  • Prior Release
  • Other Archives
  • Coordinate Converter

Gene Dmel\CR40282

General Information
Symbol	Dmel\CR40282	Species	D. melanogaster
Name		Annotation symbol	CR40282
Feature type	pseudogene_attribute	FlyBase ID	FBgn0039979
Gene Model Status	Current	Stock availability	1 publicly available
Also Known As	CG17706
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	41C1-41C1	Sequence location	2R:617,944..618,746 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CR40282 (FBgn0039979). It is a pseudogene_attribute from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has one annotated transcript. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of low expression to a trough of no expression detected. Peak expression observed in adult male stages. Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1627450_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG40282. Gene sequence location is 2R:617944..618746.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 41C1-41C1
Experimentally Determined Cytological Location
Cytogenetic map Notes References 41C1-41C6   h46   (Drosophila Heterochromatin Genome Project, 2004)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CR40282 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47 Pseudogene similar to nonA; transposed; partial. One of several pseudogenes derived from the 5' portion of the nonA gene; found in dispersed genomic locations. Portion inverted and annotated on opposite strand.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt)   CR40282-RB FBtr0307119     803
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence   Name AABU01002769 EAA46002   AY119651   BT149890
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    4 Larval Midgut    3 Larval Hindgut    1.4 Larval Malpighian Tubules    7.4 Larval Fat Body    16 Larval Salivary Gland    5 Larval Trachea    2.8 Larval Carcass    2.075 Adult Head    2.2 Adult Eye    1.775 Adult Brain    2.3 Adult Thoracic-Abdominal Ganglion    5.7 Adult Crop    1.7 Adult Midgut    2 Adult Hindgut    1.8 Adult Malpighian Tubules    2.5 Adult Fat Body    3.2 Adult Salivary Gland    5.8 Adult Heart    0.875 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.1 Adult Ovary    2.2 Adult Testis    6.8 Adult Male Accessory Gland    2.3 Adult Carcass    3.3 Expression Level Scale  None   Low  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    4 Larval Midgut    3 Larval Hindgut    1.4 Larval Malpighian Tubules    7.4 Larval Fat Body    16 Larval Salivary Gland    5 Larval Trachea    2.8 Larval Carcass    2.075 Adult Head    2.2 Adult Eye    1.775 Adult Brain    2.3 Adult Thoracic-Abdominal Ganglion    5.7 Adult Crop    1.7 Adult Midgut    2 Adult Hindgut    1.8 Adult Malpighian Tubules    2.5 Adult Fat Body    3.2 Adult Salivary Gland    5.8 Adult Heart    0.875 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.1 Adult Ovary    2.2 Adult Testis    6.8 Adult Male Accessory Gland    2.3 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    4 Larval Midgut    3 Larval Hindgut    1.4 Larval Malpighian Tubules    7.4 Larval Fat Body    16 Larval Salivary Gland    5 Larval Trachea    2.8 Larval Carcass    2.075 Adult Head    2.2 Adult Eye    1.775 Adult Brain    2.3 Adult Thoracic-Abdominal Ganglion    5.7 Adult Crop    1.7 Adult Midgut    2 Adult Hindgut    1.8 Adult Malpighian Tubules    2.5 Adult Fat Body    3.2 Adult Salivary Gland    5.8 Adult Heart    0.875 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.1 Adult Ovary    2.2 Adult Testis    6.8 Adult Male Accessory Gland    2.3 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    4 Larval Midgut    3 Larval Hindgut    1.4 Larval Malpighian Tubules    7.4 Larval Fat Body    16 Larval Salivary Gland    5 Larval Trachea    2.8 Larval Carcass    2.075 Adult Head    2.2 Adult Eye    1.775 Adult Brain    2.3 Adult Thoracic-Abdominal Ganglion    5.7 Adult Crop    1.7 Adult Midgut    2 Adult Hindgut    1.8 Adult Malpighian Tubules    2.5 Adult Fat Body    3.2 Adult Salivary Gland    5.8 Adult Heart    0.875 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.1 Adult Ovary    2.2 Adult Testis    6.8 Adult Male Accessory Gland    2.3 Adult Carcass    3.3 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    4 Larval Midgut    3 Larval Hindgut    1.4 Larval Malpighian Tubules    7.4 Larval Fat Body    16 Larval Salivary Gland    5 Larval Trachea    2.8 Larval Carcass    2.075 Adult Head    2.2 Adult Eye    1.775 Adult Brain    2.3 Adult Thoracic-Abdominal Ganglion    5.7 Adult Crop    1.7 Adult Midgut    2 Adult Hindgut    1.8 Adult Malpighian Tubules    2.5 Adult Fat Body    3.2 Adult Salivary Gland    5.8 Adult Heart    0.875 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.1 Adult Ovary    2.2 Adult Testis    6.8 Adult Male Accessory Gland    2.3 Adult Carcass    3.3 Expression Level Scale  None   Low  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    4 Larval Midgut    3 Larval Hindgut    1.4 Larval Malpighian Tubules    7.4 Larval Fat Body    16 Larval Salivary Gland    5 Larval Trachea    2.8 Larval Carcass    2.075 Adult Head    2.2 Adult Eye    1.775 Adult Brain    2.3 Adult Thoracic-Abdominal Ganglion    5.7 Adult Crop    1.7 Adult Midgut    2 Adult Hindgut    1.8 Adult Malpighian Tubules    2.5 Adult Fat Body    3.2 Adult Salivary Gland    5.8 Adult Heart    0.875 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.1 Adult Ovary    2.2 Adult Testis    6.8 Adult Male Accessory Gland    2.3 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    4 Larval Midgut    3 Larval Hindgut    1.4 Larval Malpighian Tubules    7.4 Larval Fat Body    16 Larval Salivary Gland    5 Larval Trachea    2.8 Larval Carcass    2.075 Adult Head    2.2 Adult Eye    1.775 Adult Brain    2.3 Adult Thoracic-Abdominal Ganglion    5.7 Adult Crop    1.7 Adult Midgut    2 Adult Hindgut    1.8 Adult Malpighian Tubules    2.5 Adult Fat Body    3.2 Adult Salivary Gland    5.8 Adult Heart    0.875 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.1 Adult Ovary    2.2 Adult Testis    6.8 Adult Male Accessory Gland    2.3 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    4 Larval Midgut    3 Larval Hindgut    1.4 Larval Malpighian Tubules    7.4 Larval Fat Body    16 Larval Salivary Gland    5 Larval Trachea    2.8 Larval Carcass    2.075 Adult Head    2.2 Adult Eye    1.775 Adult Brain    2.3 Adult Thoracic-Abdominal Ganglion    5.7 Adult Crop    1.7 Adult Midgut    2 Adult Hindgut    1.8 Adult Malpighian Tubules    2.5 Adult Fat Body    3.2 Adult Salivary Gland    5.8 Adult Heart    0.875 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.1 Adult Ovary    2.2 Adult Testis    6.8 Adult Male Accessory Gland    2.3 Adult Carcass    3.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    2.2   NA  Eye    1.775   NA  Brain    2.3   4  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    5.7   NA  Crop    1.7   3  Midgut    2   1.4  Hindgut    1.8   7.4  Malpighian Tubules    2.5   no informative data  Fat Body    3.2   5  Salivary Gland    5.8   NA  Heart    0.875   2.8  Trachea    NA   NA  VirginFemale Spermatheca    1.7   NA  InseminatedFemale Spermatheca    3.1   NA  Ovary    2.2   NA  Testis    6.8   NA  Male Accessory Gland    2.3   2.075  Carcass    3.3 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of low expression to a trough of no expression detected. Peak expression observed in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    0 white prepupae new    0 white prepupae 12hr    0 white prepupae 24hr    0 pupae 2d postWPP    0 pupae 3d postWPP    0 pupae 4d postWPP    0 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Treatments RNA-Seq
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_31 mE1_20_mRNA_expression_cluster_08
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0039979 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG40282-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CR40282 Class Mutagen Stocks Known lesion CR40282KG08252 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CR40282 Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Disrupted in	Df(2R)M41A2 (Coulthard et al., 2010)
Not disrupted in	Df(2R)34-2 (Coulthard et al., 2010)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{SUPor-P}CR40282KG08252 NA insertion of enhancer trap P{lacW}l(2)SH0152SH0152 No
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	non_protein_coding_gene (FlyBase Genome Annotators, 2011) nuclear_gene   pseudogene_attribute (FlyBase Genome Annotators, 2011)
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CR40282 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 78265 DroID - A comprehensive database of gene and protein interactions. • FBgn0039979 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 3355140
Orthologs
OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search No orthologs identified Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (None identified)
No orthologies identified
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 1 )
Bloomington	14710 y1 w67c23; P{SUPor-P}CR40282KG08252
Genomic Clones ( 1 )
	BACR15A11 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 2 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE58280
Other clones	RH34608
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0039979 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 12798062
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	Annotation CG40282 renamed CR40282 in release 5.36 of the genome annotation. (FlyBase Genome Annotators, 2011) Annotation CG17706 renamed CG40282 in release 3.1 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	DDBJ / EMBL / GenBank • AABU01002769 EAA46002 Entrez Gene - A searchable database of RefSeq genes. • 3355140 UniProtKB/TrEMBL • Q7PLI4
Other Crossreferences
Linkouts
	BioGRID - A database of protein and genetic interactions • 78265 DroID - A comprehensive database of gene and protein interactions. • FBgn0039979 DRSC - Results from RNAi screens. • FBgn0039979 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0039979 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG40282-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0039979 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 12798062 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 3355140 modMine - Data generated by the modENCODE project. • FBgn0039979
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	CG17706 (Drosophila Heterochromatin Genome Project, 2006, Dimitri et al., 2005, Rossi et al., 2007, Coulthard et al., 2010) CG40282 (Zhan et al., 2011) CR40282 (FlyBase Genome Annotators, 2011)
Name Synonym
Secondary FlyBase IDs
	FBan0017706 FBgn0058282
References ( 13 )
Research paper	Zhan et al., 2011, Gene 470(1-2): 1--6 Evolution of alternative splicing in newly evolved genes of Drosophila. [FBrf0212278] Coulthard et al., 2010, Genetics 185(2): 479--495 Essential loci in centromeric heterochromatin of Drosophila melanogaster. I: the right arm of chromosome 2. [FBrf0211235] Rossi et al., 2007, Genetics 175(2): 595--607 Cytogenetic and molecular characterization of heterochromatin gene models in Drosophila melanogaster. [FBrf0192814] Corradini et al., 2003, Chromosoma 112(1): 26--37 FISH analysis of Drosophila melanogaster heterochromatin using BACs and P elements. [FBrf0160459]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Oh et al., 2003, Genetics 163(1): Table S1. [FBrf0157097]
Review	Dimitri et al., 2005, BioEssays 27(1): 29--41 The paradox of functional heterochromatin. [FBrf0182735]
Personal communication to FlyBase	Drosophila Heterochromatin Genome Project, 2006, Release 5.1 of the annotated Drosophila melanogaster heterochromatin. Release 5.1 of the annotated Drosophila melanogaster heterochromatin. [FBrf0188763] Drosophila Heterochromatin Genome Project, 2004, Release 3.2 of the annotated Drosophila melanogaster heterochromatin. Release 3.2 of the annotated Drosophila melanogaster heterochromatin. [FBrf0173307] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177]
FlyBase analysis	FlyBase Genome Annotators, 2011, Changes affecting gene model number or type in release 5.36 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 5.36 of the annotated D.melanogaster genome. [FBrf0213141] FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886]