FB2025_01 , released February 20, 2025
Transcript: Dmel\CG42540-RC
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General Information
Symbol
Dmel\CG42540-RC
Species
D. melanogaster
Annotation Symbol
CG42540-RC
FlyBase ID
FBtr0301097
Feature type
Associated gene
Evidence Rank
Length (nt)
3863
Evidence Score
Genomic Location
Genomic Maps
cDNA Clones Consistent with the Transcript ( 34 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
      cDNA Clones, End Sequence Only (ESTs)
      End(s) extend beyond the annotated transcript, internally consistent
        Sequence
        GCAGTTTGTTGTTAGTGCTGAACGGCAGTGAACGGACAGCGCTTGTTGGTTGTTCGTCTCTCGCACACATAGGGCCCGAA
        AAAGTTGAGCTGCCGTTTTTCGAGGGAGTTTTGGCACATGTTTTGTTTCCGCAACAGCTTCTTTTCCACTCCGCTTCCCG
        ATAATATTGCATTTTTGAAAACTTCGCTTGTTTGCCCATTTGTGTGTGGGCTAAAACTACTGACCGAATCGAGTGCCAAG
        TGACCAGAAATACACAACACACACCCCAGTTCGCCATCACACTAGAGGGGCTAAGACAATCACACAAGACATCAACGGAA
        AGTGCAAAAACCTTAGATTAAACTTAGATCGACTGCCAAAACTCAGGCAGTCCATACAGCCACAAAAAGGACAGCAACCT
        ACGAATTTCTCAGTGTGTGACATCCAAATTCTATATTCTACAAAAAAGTCAATAAGCAAAAAACAACAACAACAGGTGTT
        TCAGCTTTATCTATTGTCAAAACCAAAGAGCCACAAAATAATTAAGCCCAACAGCGGCAATTAGCATTTGTCCATAATTG
        ATAAGCAGAAACTTTAATTTAGTGCGTGTCAATTTGAATAGTATCGTATCCTGCGTGCTGACTGTGTGTGTGCGTGTGTG
        TGCGAGTGCGTGAGCTAGTGTGTGTGTGTGTGATTGCGTGGGGGCTTGTATGTGTGTGGCTGCTGTGCTCGGCGCACGTG
        CAACGAAAGATGGTCGAGGAGTTCCTGGAGAAGTTGCCAGAAATCGACACACGCTACGAGGATATTGTGCCCATGGAACA
        AGTGAGCTCGATGGTCTCCAATGGCGGTGGCAGCGTGGCCATGCAGCGCGATGATGAGTACAGGAATCGGATCATGAAAA
        TACGTAGACTTGCGGACGAGGAAATCAGCGATAAGGCATCAACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTT
        GTGATAATGACGCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCAGGAGTACGAGCGCGCGGTTATCTTCCGTTT
        GGGTCGTCTTATGCAGGGCGGTGCCAAGGGCCCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTATGCCCGTGTGG
        ACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGTTCTCACAAAGGATAGCGTTACGGTTTCGGTGGATGCAGTG
        GTTTACTATCGGGTATCAAATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCATTCGACCAGGCTACTGGCACA
        GACTACTCTACGAAACACAATGGGAACTCGGCATTTGCATGAGATACTCAGCGAGCGTATGACGATTTCCGGCACAATGC
        AGGTTCAACTCGACGAAGCCACCGATGCCTGGGGCATCAAAGTTGAACGTGTGGAAATCAAGGACGTGCGTCTGCCGGTG
        CAACTGCAACGTGCCATGGCCGCGGAGGCAGAAGCCGCCCGGGAAGCCCGCGCCAAAGTCATCGCCGCCGAAGGAGAACA
        GAAGGCGTCGAGGGCTCTTCGCGAGGCGTCCGAGGTGATTGGCGATTCGCCGGCTGCCCTCCAACTGCGCTACCTTCAGA
        CACTCAACACCATATCTGCGGAGAAGAACTCGACGATTGTGTTCCCGCTGCCCATCGATTTAATAACATATTTCCTGAAG
        ACCAACGAGGCCACAACGCAGCAAAATGCCCGAGCAGCTGCGGCAGCAATTGGCAACACACCGCCGCCATTGCAACTGGC
        GCCGCAGCAGCAGATGGGGCAGCAGCAACAGCCGCAGTACCAACAGCCGCAGCAGCAGCAGCAGCAGTACCAACCGCAGC
        AGCAACAACAGCAGCAGCAGCAACAGCCGCAGCAGCAAGATCAACTCTATCAACAGGGGCAGCAGATCTCATCAGCCATG
        TAAATCAGCTTAAGATCACAAAAGTTTCGGCTTCGTCGACTCTAAAATGTCCTGCACAATGTTTGAAAAATATCCTGTTA
        GCATAAAAATACATCAGGAATTTGTATCATATATGCATTTCCTTTAAAGAAATGCATATCCAAATATCGATAGGAAAAAG
        TGTAACTGAACAGGCTTTTTTCTCCAGTCGAAAATATTGCTTCATTTTCAAAGGCTGGGCAACTCTGACGACCAACTTAA
        AAATGTGTATCTCAAATCCCCATATCCCTTTCCCCTGAGATGCACATTTTGAGTTACTATCCTTTAGGAAATGCTGGAAA
        GCTGGCTATGTAATTCTTGTTAGGGAATGTAATGTAATGCATTTTTCTGGGCTTTTTAAGCAGCAGCTCTAAATATAATT
        GTGCAGAGCGTTTCAACAGAAAAACCCAAGAACAAAAAACAACCAACGGAAACAACGATTCAAAAGAATCAAAAATCTTA
        GTTCATAACACCGATAAGTGCGATTCGAATGCGTTAGTCGACTGCAGATCCTTCAAGAAAGAAACGAGGGATCTGAGGTC
        AAATAGATACAAAGATACAAACCTAGACTAGTTTCATACGAGGCGAAAATAGAGTTTAATATTTGTAGCTTTACGACCAG
        AGGATGCAATTCTAAATATTAAATGTAGGAACTAGCGGTGCAACTCAAATTTAGCACACACAACACAAAAATCAAAGTAA
        AATACTTACTATTAAAATCATACCATATGATGTGCGGTCGTTCAGGTGAAAATTCTAAAACCAACCAGTTTTGAAAGTCT
        TGAATTGTGAAATTTGAAATAGTCAAAAATGGTTGGTTTGGTTTTGTCTTTTCACGAACTGAGCGAGCCACAGATTATTG
        TTTGTTTTTCTCTCAATATTCCACGAAGGTCCGTTTCCTTGCATTCTAGTTAAGTGTTAGACCATTTTGTTACTTTAATT
        ACGTATTTTATTAAAAATTTCTTTTTAATAATAAATTAATTAACTGATCTAAGAAAACGGGCCGTCGTTGAACCAAAATA
        TTCAATGAACTGTTGACAAAGGCGTTTTGTAATTGTTTATCCGTAAGATGGTTACCCTGTTAATTATGGATGAATCTGAT
        TACTTAAAATATTGCTGTATACTTAGCTATGCAAATTTAACTTTAAGTCGTGATCAGGTTAGTTCGTATAAAATAGAGTT
        ACTGTTGTTCAAAACCAATTAAAACTTTATAGGACTTTAATAACTCTCATTATGAACAGTTGTACTCATATGGTACACTC
        CAACTAATACAACTGTTAATCTGTTTCCACTGGAGCTAATCCAGGCATCTAGAGGATTTTTTTTGATCATAGTGGGTTTA
        GATATCTATTAAAAATATCGATCAGTTTTAAAAGTTATCTGAACCCACGCTAACAGATGAAATCAACTAGTCAGCAACGT
        TCGTAGGTCCAAAATACGAATGCCAAACAATAAATAAGAGTAATACGAATTTATTGTACATACAATAAACAAATAGAGCA
        TTTAAGCCGTACAGAACTGTTTTACCAATTGACACCTTAATTAATATTGCATATTCGTATCGGGTATACACCACACACAA
        ACACATACACAGGATCGTAGAAGGTAGCCTCTCTCGAAGTAGAATCCGTCTACTTGAATATGTCTGAAGTACGAAGAAGT
        CGACGAAAGAAATGCATCTTATGCTAGAATGTATTTGCAACACGAAAAAGTTTACTTTTTAGCGCACTTCATGGAATACG
        AAACGAGTTATTGATATAATAATATATATACATATGCAAGCATAACGAACTACATATTATGTACAATTTTGCCTTTGAAA
        ATTTTTAAACAGAAACGATTTCATTATCCACATACAATTAGATTTATGTGTAAAGGAACAATAAAATTTCTTCAACTTTT
        TTGGTATCCAAAAGAGCAAAAAC
        
        Other Products of this Gene
        Other Transcripts
        Name
        FlyBase ID
        Length (nt)
        FBtr0301096
        3219
        FBtr0301095
        3766
        FBtr0301098
        2017
        FBtr0304988
        3802
        FBtr0333583
        3851
        FBtr0333584
        3899
        FBtr0333585
        4175
        FBtr0344807
        3887
        Polypeptides
        Derived from THIS transcript
        Name
        FlyBase ID
        Length (aa)
        FBpp0290319
        397
        Derived from OTHER transcripts
        Name
        FlyBase ID
        Length (aa)
        FBpp0290318
        398
        FBpp0290317
        505
        FBpp0290320
        506
        FBpp0293525
        517
        FBpp0305760
        393
        FBpp0305761
        409
        FBpp0305762
        501
        FBpp0311132
        405
        Comments

        Annotation and micro-exon sequence based on AY069196 and FBrf0161031 (Volfovsky et al.)

        Transcript terminates at site supported by polyadenylated cDNA.

        External Crossreferences and Linkouts ( 1 )
        Crossreferences
        RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
        Synonyms and Secondary IDs (1)
        Reported As
        Symbol Synonym
        CG42540-RC
        Secondary FlyBase IDs
        • FBtr0073312
        References (0)