Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
27D4-27D5	2L:7027526..7028959	MME1	9 stocks
27D5-27D5	2L:7030493..7032606	Rab30	13 stocks
27D5-27D5	2L:7032721..7037878	Caper	11 stocks
27D5-27D7,27D5-27D6,27C-27D,27D1-27D2	2L:7037823..7056010	milt	27 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
21-60	2L:7525..25255318	l(2)k17003
21-60	2L:7525..25255318	l(2)k08139
21-60	2L:7525..25255318	l(2)05315
21-60	2L:7525..25255318	ultB
21-60	2L:7525..25255318	l(2)k05510
21-60	2L:7525..25255318	l(2)k07525
21-60	2L:7525..25255318	l(2)k02113
21-60	2L:7525..25255318	su(Bar)2
21-60	2L:7525..25255318	l(2)k09316
21-60	2L:7525..25255318	l(2)k13914
21-60	2L:7525..25255318	l(2)05337
21-60	2L:7525..25255318	l(2)k06020
21-60	2L:7525..25255318	l(2)k07160
21-60	2L:7525..25255318	Su(var)2-S29
21-60	2L:7525..25255318	l(2)k15801
21-60	2L:7525..25255318	l(2)k10209	FBst0010353
21-60	2L:7525..25255318	l(2)03845
21-60	2L:7525..25255318	l(2)k00607	FBst0301118
21-60	2L:7525..25255318	M(2)34k
21-60	2L:7525..25255318	ultA
21-60	2L:7525..25255318	l(2)k11537
21-60	2L:7525..25255318	l(2)k16716
21-60	2L:7525..25255318	l(2)32e
21-60	2L:7525..25255318	l(2)k04810
21-60	2L:7525..25255318	l(2)k14403
21-60	2L:7525..25255318	l(2)09639
21-60	2L:7525..25255318	l(2)k02705
21-60	2L:7525..25255318	l(2)02321	FBst0011183
21-60	2L:7525..25255318	l(2)k09107	FBst0010860
21-60	2L:7525..25255318	fs(2)261505
21-60	2L:7525..25255318	l(2)k07332	FBst0010669
21-60	2L:7525..25255318	fs(2)80
21-60	2L:7525..25255318	l(2)03728
21-60	2L:7525..25255318	dud
21-60	2L:7525..25255318	l(2)s3997
21-60	2L:7525..25255318	ifm(2)RU6
21-60	2L:7525..25255318	l(2)k16616	FBst0301923
21-60	2L:7525..25255318	l(2)k08306
21-60	2L:7525..25255318	l(2)k10816	FBst0314113
21-60	2L:7525..25255318	l(2)k16904	FBst0301950
21-60	2L:7525..25255318	l(2)k13825
21-60	2L:7525..25255318	l(2)k08401a
21-60	2L:7525..25255318	Su(var)2-24
21-60	2L:7525..25255318	ifm(2)RU8
21-60	2L:7525..25255318	l(2)k16514
21-60	2L:7525..25255318	l(2)k12702
21-60	2L:7525..25255318	l(2)Su(Sp)
21-60	2L:7525..25255318	l(2)k09624	FBst0314085
21-60	2L:7525..25255318	l(2)k15819
21-60	2L:7525..25255318	l(2)k06408	FBst0010623
21-60	2L:7525..25255318	l(2)k09303	FBst0010874
21-60	2L:7525..25255318	l(2)k03901
21-60	2L:7525..25255318	l(2)k17039
21-60	2L:7525..25255318	l(2)10206
21-60	2L:7525..25255318	M(2)33d
21-60	2L:7525..25255318	tu-47
21-60	2L:7525..25255318	l(2)k08136
21-60	2L:7525..25255318	l(2)k00312
21-60	2L:7525..25255318	fs(2)261404
21-60	2L:7525..25255318	l(2)k02615
21-60	2L:7525..25255318	l(2)8bb
21-60	2L:7525..25255318	l(2)k14039
21-60	2L:7525..25255318	l(2)k15211
21-60	2L:7525..25255318	l(2)k14316	FBst0301828
21-60	2L:7525..25255318	l(2)k06712	FBst0004395
21-60	2L:7525..25255318	l(2)k08807	FBst0004396
21-60	2L:7525..25255318	ifm(2)RU7
21-60	2L:7525..25255318	E(var)2-88
21-60	2L:7525..25255318	l(2)k04512
21-60	2L:7525..25255318	l(2)k11702
21-60	2L:7525..25255318	l(2)94
21-60	2L:7525..25255318	l(2)k04207
21-60	2L:7525..25255318	l(2)k077
21-60	2L:7525..25255318	l(2)M65
21-60	2L:7525..25255318	l(2)01482	FBst0011062
21-60	2L:7525..25255318	l(2)06253	FBst0011480
21-60	2L:7525..25255318	l(2)00329
21-60	2L:7525..25255318	l(2)k09217	FBst0010865
21-60	2L:7525..25255318	l(2)k09903
21-60	2L:7525..25255318	l(2)k08625
21-60	2L:7525..25255318	l(2)rJ235
21-60	2L:7525..25255318	l(2)k11038
21-60	2L:7525..25255318	l(2)30l	FBst0000366
21-60	2L:7525..25255318	l(2)k11002
21-60	2L:7525..25255318	l(2)k08707
21-60	2L:7525..25255318	l(2)k14810
21-60	2L:7525..25255318	l(2)04548
21-60	2L:7525..25255318	l(2)k02501	FBst0313970
21-60	2L:7525..25255318	l(2)k09015a	2 stocks
21-60	2L:7525..25255318	l(2)k13215
21-60	2L:7525..25255318	l(2)k09033
21-60	2L:7525..25255318	l(2)k11502
21-60	2L:7525..25255318	l(2)s1864
21-60	2L:7525..25255318	l(2)k05636
21-60	2L:7525..25255318	l(2)k09619
21-60	2L:7525..25255318	l(2)s1976
21-60	2L:7525..25255318	l(2)k12004
21-60	2L:7525..25255318	moz
21-60	2L:7525..25255318	M(2)201
21-60	2L:7525..25255318	l(2)k06917	FBst0010649
21-60	2L:7525..25255318	l(2)k00503
21-60	2L:7525..25255318	l(2)k07526
21-60	2L:7525..25255318	l(2)k06106
21-60	2L:7525..25255318	lup-4
21-60	2L:7525..25255318	l(2)k07219
21-60	2L:7525..25255318	l(2)k07245	FBst0314033
21-60	2L:7525..25255318	l(2)k00313
21-60	2L:7525..25255318	fs(2)H47
21-60	2L:7525..25255318	l(2)02438
21-60	2L:7525..25255318	l(2)k06501
21-60	2L:7525..25255318	Tsc	FBst0002058
21-60	2L:7525..25255318	M(2)34d
21-60	2L:7525..25255318	l(2)k09502
21-60	2L:7525..25255318	l(2)148
21-60	2L:7525..25255318	l(2)k07020
21-60	2L:7525..25255318	l(2)k13525
21-60	2L:7525..25255318	M(2)34b
21-60	2L:7525..25255318	l(2)k13531
21-60	2L:7525..25255318	l(2)k11326
21-60	2L:7525..25255318	l(2)k16105	FBst0012187
21-60	2L:7525..25255318	l(2)k10237	FBst0314102
21-60	2L:7525..25255318	l(2)k15306
21-60	2L:7525..25255318	l(2)k11021
21-60	2L:7525..25255318	l(2)k12602
21-60	2L:7525..25255318	l(2)k09216
21-60	2L:7525..25255318	l(2)08685
21-60	2L:7525..25255318	l(2)k14817
21-60	2L:7525..25255318	l(2)M167
21-60	2L:7525..25255318	l(2)k09005
21-60	2L:7525..25255318	l(2)k13217	FBst0301769
21-60	2L:7525..25255318	l(2)s4989	FBst0314188
21-60	2L:7525..25255318	l(2)CA7	2 stocks
21-40	2L:7525..22677528	e(if)1
21-40	2L:7525..22677528	l(2)cl-L3	3 stocks
24C2-27E8	2L:3726432..7277616	inaB	FBst0042239
25D-30C	2L:5213650..9785847	E(faf)bE160
25D-30C	2L:5213650..9785847	E(faf)bE365
27C5-27E2	2L:6933569..7156609	l(2)27Db
27C5-27E2	2L:6933569..7156609	l(2)27Dc

*Insertions (cytology mapped)* [Export into hitlist]
26F--27F	2L:6583041..7445305	P{UAS-Cameleon.2.1}82	FBst0006901
27D5-27D7	2L:7027555..7069441	P{lacW}milt[k04704]	2 stocks
27D5-27D5	2L:7027555..7038414	TI{GAL4}Rab30[Gal4-KO]
27D5-27D5	2L:7027555..7038414	TI{TI}Rab30[EYFP]	FBst0062557

*Insertions (sequence mapped)* [Export into hitlist]
27D5	2L:7027611..7027611	P{EP}MME1[G2643]	FBst0027001
27D5	2L:7029391..7029391	PBac{PB}c04149
27D5_r5	2L:7030882..7030882	PBac{SAstopDsRed}LL04313	FBst0319847
27D5	2L:7033064..7033064	PBac{WH}Caper[f07714]	FBst0317261
27D5-27D5	2L:7033157..7033157	P{PTT-GC}Caper[CC01391]	FBst0053047
27D5	2L:7033321..7033321	PBac{WH}Caper[f05171]
27D5-27D5	2L:7033549..7033549	PBac{754.P.FSVS-0}Caper[CPTI002939]	FBst0325373
27D5	2L:7037070..7037070	P{GSV6}GS9012	FBst0309458
27C6-27C7	2L:7037433..7038026	P{lacW}l(2)SH2086[SH2086]
27D5	2L:7037998..7037998	P{GSV6}GS14998
27D5	2L:7038020..7038020	P{GSV6}GS16185	FBst0323777
27D5_r6	2L:7038021..7038021	P{EPgy2}milt[EY01559]	FBst0015518
27D5	2L:7038079..7038079	P{Mae-UAS.6.11}milt[LA00951]	2 stocks
27D5-27D6	2L:7038279..7040472	P{lacW}milt[k14514b]
27D5-27D6	2L:7038279..7040472	P{lacW}milt[k06704]	FBst0301422

*Deleted segments (sequence mapped)* [Export into hitlist]
27A1--27E1	2L:6709099..7084679	Df(2L)ED441	2 stocks
27D3--27E4	2L:7010116..7204348	Df(2L)ED450
27D3--27E1	2L:7010116..7084679	Df(2L)ED440	FBst0313122

*Duplicated segments (sequence mapped)* [Export into hitlist]
27C7-27D6	2L:6951609..7047228	Dp(2;3)GV-CH321-73J22	FBst0090579

*Deleted segments (cytology mapped)* [Export into hitlist]
27A--28B	2L:6687692..7644956	Df(2L)Dwee1
27A--28A	2L:6687692..7548020	Df(2L)Dwee-δ5	FBst0324947
27B2--27F2	2L:6798470..7369686	Df(2L)spd[j2]	3 stocks
27C2--28B4	2L:6880270..7644956	Df(2L)J-HSM5
27C5--28B4	2L:6933569..7644956	Df(2L)J-H	3 stocks
27C6--28A1	2L:6939662..7485292	Df(2L)ade-3[27]
27D1--31F2	2L:6969878..10495428	Df(2L)B231
27D1--27F2	2L:6969878..7369686	Df(2L)ade3	FBst0006790
27D1--27E2	2L:6969878..7156609	Df(2L)ST
27D3--27E3	2L:6996527..7181431	Df(2L)Exel7030

*Duplicated segments (cytology mapped)* [Export into hitlist]
21E--28D	2L:518419..8060238	Dp(2;2)AM33
23E--27F1	2L:3218267..7334242	Dp(2;2)M24F[+]16
23F--29B	2L:3370088..8387293	Dp(2;2)M24F[+]20
24B--29C	2L:3666353..8454356	Dp(2;2)M[+]Su[24+]-2
24C2--28A	2L:3726432..7548020	Dp(2;2)B24
24C8--27E	2L:3859231..7277616	Dp(2;2)B10
24F2--29D1	2L:4417636..8491870	Dp(2;2)P32
25A1--30B1	2L:4537965..9413865	Dp(2;2)P21
25F1--30D1	2L:5572914..9860918	Dp(2;2)P24
25F--27E	2L:5572914..7277616	Dp(2;2)13-64
26A1--28E	2L:5831062..8168304	Dp(2;2)C619	FBst0304865
26A3--30C5	2L:5942498..9711174	Dp(2;2)P1
26C--27D	2L:6233013..7069441	Dp(2;2)Cam3a	FBst0008539
26F--33A1	2L:6583041..11806263	Dp(2;2)P22
27C--27F	2L:6839039..7445305	Dp(2;2)Cam3c	FBst0008541

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
21A-58B	2L:7525..22128418	In(2LR)CA10
21A-30E	2L:7525..9920729	In(2L)IW3
21D-36F	2L:464654..18684441	In(2L)CA11
21D-49D4	2L:464654..12859461	In(2LR)vg87e29
21E-59C	2L:518419..23139064	In(2LR)434.37
21F-40F	2L:1086655..22677528	In(2L)DTD94
21F-57C	2L:1086655..21199299	In(2LR)Dem1-13
21F-33A	2L:1086655..11901327	In(2L)M2
22A-59C	2L:1326938..23139064	In(2LR)RBR104
22A-40E	2L:1326938..22148236	In(2L)V11-3
22A-34A	2L:1326938..13241340	In(2L)88d43
22A1-34A1	2L:1326938..12859086	In(2L)CA38
22A-33B	2L:1326938..12053550	In(2L)PS6
22A5-49D4	2L:1644742..12859461	In(2LR)vg[74c4]
22B4-36F10	2L:1852362..18677991	In(2L)88g42a
22C-36C	2L:2027809..17552485	In(2L)83b27
22C-35B	2L:2027809..15063839	In(2L)IE
22D-57A	2L:2132200..20683849	In(2LR)KB
22D-36C	2L:2132200..17552485	In(2L)81a2
22D-34B	2L:2132200..13428842	In(2L)eya	3 stocks
22D-34A	2L:2132200..13241340	In(2L)RBR118
22D-30B	2L:2132200..9589828	In(2L)AWI1
22D-27F	2L:2132200..7445305	In(2L)K35
22E-36F	2L:2298836..18684441	In(2L)SMG4
22E-33E	2L:2298836..12581605	In(2L)RBR50
22E-28E	2L:2298836..8168304	In(2L)RBR70
22F-60A	2L:2425050..23989883	In(2LR)JHI1
22F-58E	2L:2425050..22584651	In(2LR)A81414
22F-40B	2L:2425050..21929711	In(2L)Mg88
22F-30B	2L:2425050..9589828	In(2L)SD-YT258
23A-33B	2L:2564559..12053550	In(2L)RBR8
23A-46E	2L:2564559..10111219	In(2LR)CA14
23A-29E	2L:2564559..8761614	In(2L)ZP5
23B-53C	2L:2790738..16667220	In(2LR)Dem2-1
23B1-35D4	2L:2790738..15853531	In(2L)88g53
23B-29F	2L:2790738..9059863	In(2L)AWI3
23C-32A	2L:2875793..10774975	In(2L)C127
23E-40D	2L:3218267..22061076	In(2L)SMG7
23E-33E	2L:3218267..12581605	In(2L)PS9
24A-33E	2L:3526910..12581605	In(2L)IH
24A-31F	2L:3526910..10557961	In(2L)PS10
24A-30B	2L:3526910..9589828	In(2L)Alt-1
24A-29F	2L:3526910..9059863	In(2L)JHI5
24C-49D4	2L:3698877..12859461	In(2LR)vg[79h4]
24C-30A	2L:3698877..9362423	In(2L)C183
24C4-43E15	2L:3780680..7776045	In(2LR)cn74d5
24D-58B	2L:3912566..22128418	In(2LR)pc83
24D-56F	2L:3912566..20361757	In(2LR)JHI2
24D-30C	2L:3912566..9785847	In(2L)IJ
24D-30A	2L:3912566..9362423	In(2L)pc8
24E-36E	2L:4225490..18188234	In(2L)Mg84
24E2-49D4	2L:4376540..12859461	In(2LR)vg[82c61]
25A-49B	2L:4537965..12690972	In(2LR)pc34
25A5-29F	2L:4780032..9059863	In(2L)53d
25B-28C	2L:4842677..7820556	In(2L)PS11
25C-49D4	2L:5006015..12859461	In(2LR)vg[77d1]
25C-32C	2L:5006015..11021965	In(2L)AWI5
25E-31D	2L:5372875..10391524	In(2L)Mg90
25E-30C	2L:5372875..9785847	In(2L)St-F
25E6-49D4	2L:5538450..12859461	In(2LR)vg[88g80]
26A-59D	2L:5831062..23434601	In(2LR)JHI4
26A-38D	2L:5831062..20687000	In(2L)JHI29
26-56F	2L:5831062..20361757	In(2LR)SD-YT186
26A-56D	2L:5831062..19570458	In(2LR)JHI3
26A-35F	2L:5831062..16411601	In(2L)JHI28
26A-35E	2L:5831062..16209133	In(2L)ID
26A-35A	2L:5831062..14364252	In(2L)JHI27
26A-34E	2L:5831062..14003468	In(2L)PS13
26A-34A	2L:5831062..13241340	In(2L)JHI26
26A-34A	2L:5831062..13241340	In(2L)JHI25
26A-34A	2L:5831062..13241340	In(2L)RBR93
26A-33E	2L:5831062..12581605	In(2L)Z4
26A-33E	2L:5831062..12581605	In(2L)A
26A-33B	2L:5831062..12053550	In(2L)JHI24
26A-33B	2L:5831062..12053550	In(2L)AWI8
26A-32D	2L:5831062..11169360	In(2L)JHI23
26A-32A	2L:5831062..10774975	In(2L)JHI22
26A-31F	2L:5831062..10557961	In(2L)IW4
26A-31D	2L:5831062..10391524	In(2L)JHI21
26A-31B	2L:5831062..10280567	In(2L)JHI20
26A-31B	2L:5831062..10280567	In(2L)AWI7
26A-31A	2L:5831062..10170693	In(2L)PS12
26A-30F	2L:5831062..10033194	In(2L)26A;30F
26A-30F	2L:5831062..10033194	In(2L)ZP3
26A-30D	2L:5831062..9880189	In(2L)IB
26A-30D	2L:5831062..9880189	In(2L)JHI19
26A-30D	2L:5831062..9880189	In(2L)AWI6
26A-45D	2L:5831062..9465233	In(2LR)DTD114
26A-29F	2L:5831062..9059863	In(2L)JHI18
26A-29F	2L:5831062..9059863	In(2L)St-H
26A-29E	2L:5831062..8761614	In(2L)JHI16
26A-29E	2L:5831062..8761614	In(2L)JHI17
26A-29D	2L:5831062..8536704	In(2L)JHI15
26A-29C	2L:5831062..8454356	In(2L)JHI14
26A-29B	2L:5831062..8387293	In(2L)JHI13
26A-28F	2L:5831062..8254275	In(2L)JHI12
26A-28C	2L:5831062..7820556	In(2L)S14
26A-28B	2L:5831062..7644956	In(2L)JHI11
26A-27E	2L:5831062..7277616	In(2L)JHI10
26A-27D	2L:5831062..7069441	In(2L)JHI9
26B-29C	2L:5980165..8454356	In(2L)JHI31
26B-29B	2L:5980165..8387293	In(2L)pc73
26B-28D	2L:5980165..8060238	In(2L)JHI30
26B-42E	2L:5980165..7078091	In(2LR)Mg199
26C-49E	2L:6233013..13024826	In(2LR)s31
26D-53E	2L:6384432..17039162	In(2LR)DA3
26D-51A	2L:6384432..14547366	In(2LR)B8
26D-33E	2L:6384432..12581605	In(2L)26D;33E
26E-31E	2L:6514156..10472969	In(2L)Mg98
26E-29B	2L:6514156..8387293	In(2L)JHI32
26F-59E	2L:6583041..23562485	In(2LR)Su(bw[D])131
26F-32D	2L:6583041..11169360	In(2L)JHI33
27B-29C	2L:6746144..8454356	In(2L)JHI35
27C-37F	2L:6839039..19673576	In(2L)Mg86
27C-34C	2L:6839039..13702162	In(2L)JHI36
27D-51E	2L:6969878..15265242	In(2LR)Gla	138 stocks
27D-34C	2L:6969878..13702162	In(2L)JHI39
27D-29F	2L:6969878..9059863	In(2L)AWI9
27D-29D	2L:6969878..8536704	In(2L)JHI38
27D-28F	2L:6969878..8254275	In(2L)JHI37
27D;34A;55C;59C-59D	2L:6969878..7069441	In(2L)pc44

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
21A-59D	2L:7525..23434601	T(Y;2)JL12
21A-57F	2L:7525..21758515	T(Y;2)JL11
21B-97C	2L:22222..26733804	T(2;3)ML505
21B-74C	2L:22222..17482659	T(2;3)H20
21C-84C8	2L:324486..7174722	T(2;3)Gld[d5]
21C5-97D3	2L:456230..26875850	T(2;3)L141-51
22-68	2L:1326938..12170417	T(2;3)A1-W	2 stocks
22E-91F	2L:2298836..19261019	T(2;3)V12-1-41
22E-89D	2L:2298836..16736155	T(2;3)T1-19
22E-89B9	2L:2298836..16273584	T(2;3)sbd[106]
23C-75C	2L:2875793..18477235	T(2;3)Mg166
23D-70D	2L:3066731..14450541	T(2;3)432.12
24D-97D	2L:3912566..27054991	T(2;3)C317
24D-92A	2L:3912566..19695282	T(2;3)smg
24D-87C1	2L:3912566..12589898	T(2;3)ML443
24D4-78C	2L:4024161..21387543	T(2;3)H7
24E-65F	2L:4225490..7431304	T(2;3)DTD120
24F-96E	2L:4397911..25712016	T(2;3)L141-49
24F-74B	2L:4397911..17429272	T(2;3)Mg171
25B-92C	2L:4842677..20096867	T(2;3)Dem1-16
25B-71C	2L:4842677..15419138	T(2;3)20c
25C-100F	2L:5006015..32068446	T(2;3)3.29	FBst0300944
25D-86C	2L:5213650..11013213	T(2;3)64-34
25F-84B2	2L:5572914..7089239	T(2;3)Antp[17]	FBst0002299
26A-89E3	2L:5831062..16902970	T(2;3)iab9[1645]
26A-69F	2L:5831062..13083087	T(2;3)HR17
26B-98F	2L:5980165..29184631	T(2;3)Mg192
26B-71C	2L:5980165..15419138	T(2;3)Mg177
26E-70A	2L:6514156..13416214	T(2;3)eya[X15]
26E-86C	2L:6514156..11013213	T(2;3)eya[X3]
26E-67A	2L:6514156..9333837	T(2;3)eya[X10]
27A-98C	2L:6687692..28383802	T(2;3)Dem1-17
27A-70F	2L:6687692..14827714	T(2;3)pc60
27B-92C	2L:6746144..20096867	T(2;3)SMG41
27D;33A;50F-27D;33A;50F	2L:6969878..7069441	Tp(2;2)MS5