Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
37A1-37A2	2L:18714453..18732524	CG10348	15 stocks
37A2-37A2	2L:18732464..18733323	lncRNA:CR44768
37A2-37A2	2L:18735748..18736130	lncRNA:CR44769
37A2-37A2	2L:18739320..18740110	CG42752	3 stocks
37A2-37A2	2L:18740358..18740807	CG15167	10 stocks
37A2-37A4,37A-37A	2L:18762874..18792906	ham	48 stocks
37A3-37A3	2L:18773314..18773837	lncRNA:CR43804
37A4-37A4	2L:18795824..18796180	lncRNA:CR44904
37A4-37A4	2L:18804491..18805347	CG43814
37A4-37A4	2L:18805445..18806205	lncRNA:CR43817
37A4-37A4	2L:18808694..18811252	CG10570	6 stocks
37A4-37A4	2L:18808694..18811252	CG42502	FBst1073430
37A4-37A5	2L:18812648..18813941	CG17325	6 stocks
37A4-37A5	2L:18812648..18813941	CG42305	3 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
21-60	2L:7525..25255318	l(2)k17003
21-60	2L:7525..25255318	l(2)k08139
21-60	2L:7525..25255318	l(2)05315
21-60	2L:7525..25255318	ultB
21-60	2L:7525..25255318	l(2)k05510
21-60	2L:7525..25255318	l(2)k07525
21-60	2L:7525..25255318	l(2)k02113
21-60	2L:7525..25255318	su(Bar)2
21-60	2L:7525..25255318	l(2)k09316
21-60	2L:7525..25255318	l(2)k13914
21-60	2L:7525..25255318	l(2)05337
21-60	2L:7525..25255318	l(2)k06020
21-60	2L:7525..25255318	l(2)k07160
21-60	2L:7525..25255318	Su(var)2-S29
21-60	2L:7525..25255318	l(2)k15801
21-60	2L:7525..25255318	l(2)k10209	FBst0010353
21-60	2L:7525..25255318	l(2)03845
21-60	2L:7525..25255318	l(2)k00607	FBst0301118
21-60	2L:7525..25255318	M(2)34k
21-60	2L:7525..25255318	ultA
21-60	2L:7525..25255318	l(2)k11537
21-60	2L:7525..25255318	l(2)k16716
21-60	2L:7525..25255318	l(2)32e
21-60	2L:7525..25255318	l(2)k04810
21-60	2L:7525..25255318	l(2)k14403
21-60	2L:7525..25255318	l(2)09639
21-60	2L:7525..25255318	l(2)k02705
21-60	2L:7525..25255318	l(2)02321	FBst0011183
21-60	2L:7525..25255318	l(2)k09107	FBst0010860
21-60	2L:7525..25255318	fs(2)261505
21-60	2L:7525..25255318	l(2)k07332	FBst0010669
21-60	2L:7525..25255318	fs(2)80
21-60	2L:7525..25255318	l(2)03728
21-60	2L:7525..25255318	dud
21-60	2L:7525..25255318	l(2)s3997
21-60	2L:7525..25255318	ifm(2)RU6
21-60	2L:7525..25255318	l(2)k16616	FBst0301923
21-60	2L:7525..25255318	l(2)k08306
21-60	2L:7525..25255318	l(2)k10816	FBst0314113
21-60	2L:7525..25255318	l(2)k16904	FBst0301950
21-60	2L:7525..25255318	l(2)k13825
21-60	2L:7525..25255318	l(2)k08401a
21-60	2L:7525..25255318	Su(var)2-24
21-60	2L:7525..25255318	ifm(2)RU8
21-60	2L:7525..25255318	l(2)k16514
21-60	2L:7525..25255318	l(2)k12702
21-60	2L:7525..25255318	l(2)Su(Sp)
21-60	2L:7525..25255318	l(2)k09624	FBst0314085
21-60	2L:7525..25255318	l(2)k15819
21-60	2L:7525..25255318	l(2)k06408	FBst0010623
21-60	2L:7525..25255318	l(2)k09303	FBst0010874
21-60	2L:7525..25255318	l(2)k03901
21-60	2L:7525..25255318	l(2)k17039
21-60	2L:7525..25255318	l(2)10206
21-60	2L:7525..25255318	M(2)33d
21-60	2L:7525..25255318	tu-47
21-60	2L:7525..25255318	l(2)k08136
21-60	2L:7525..25255318	l(2)k00312
21-60	2L:7525..25255318	fs(2)261404
21-60	2L:7525..25255318	l(2)k02615
21-60	2L:7525..25255318	l(2)8bb
21-60	2L:7525..25255318	l(2)k14039
21-60	2L:7525..25255318	l(2)k15211
21-60	2L:7525..25255318	l(2)k14316	FBst0301828
21-60	2L:7525..25255318	l(2)k06712	FBst0004395
21-60	2L:7525..25255318	l(2)k08807	FBst0004396
21-60	2L:7525..25255318	ifm(2)RU7
21-60	2L:7525..25255318	E(var)2-88
21-60	2L:7525..25255318	l(2)k04512
21-60	2L:7525..25255318	l(2)k11702
21-60	2L:7525..25255318	l(2)94
21-60	2L:7525..25255318	l(2)k04207
21-60	2L:7525..25255318	l(2)k077
21-60	2L:7525..25255318	l(2)M65
21-60	2L:7525..25255318	l(2)01482	FBst0011062
21-60	2L:7525..25255318	l(2)06253	FBst0011480
21-60	2L:7525..25255318	l(2)00329
21-60	2L:7525..25255318	l(2)k09217	FBst0010865
21-60	2L:7525..25255318	l(2)k09903
21-60	2L:7525..25255318	l(2)k08625
21-60	2L:7525..25255318	l(2)rJ235
21-60	2L:7525..25255318	l(2)k11038
21-60	2L:7525..25255318	l(2)30l	FBst0000366
21-60	2L:7525..25255318	l(2)k11002
21-60	2L:7525..25255318	l(2)k08707
21-60	2L:7525..25255318	l(2)k14810
21-60	2L:7525..25255318	l(2)04548
21-60	2L:7525..25255318	l(2)k02501	FBst0313970
21-60	2L:7525..25255318	l(2)k09015a	2 stocks
21-60	2L:7525..25255318	l(2)k13215
21-60	2L:7525..25255318	l(2)k09033
21-60	2L:7525..25255318	l(2)k11502
21-60	2L:7525..25255318	l(2)s1864
21-60	2L:7525..25255318	l(2)k05636
21-60	2L:7525..25255318	l(2)k09619
21-60	2L:7525..25255318	l(2)s1976
21-60	2L:7525..25255318	l(2)k12004
21-60	2L:7525..25255318	moz
21-60	2L:7525..25255318	M(2)201
21-60	2L:7525..25255318	l(2)k06917	FBst0010649
21-60	2L:7525..25255318	l(2)k00503
21-60	2L:7525..25255318	l(2)k07526
21-60	2L:7525..25255318	l(2)k06106
21-60	2L:7525..25255318	lup-4
21-60	2L:7525..25255318	l(2)k07219
21-60	2L:7525..25255318	l(2)k07245	FBst0314033
21-60	2L:7525..25255318	l(2)k00313
21-60	2L:7525..25255318	fs(2)H47
21-60	2L:7525..25255318	l(2)02438
21-60	2L:7525..25255318	l(2)k06501
21-60	2L:7525..25255318	Tsc	FBst0002058
21-60	2L:7525..25255318	M(2)34d
21-60	2L:7525..25255318	l(2)k09502
21-60	2L:7525..25255318	l(2)148
21-60	2L:7525..25255318	l(2)k07020
21-60	2L:7525..25255318	l(2)k13525
21-60	2L:7525..25255318	M(2)34b
21-60	2L:7525..25255318	l(2)k13531
21-60	2L:7525..25255318	l(2)k11326
21-60	2L:7525..25255318	l(2)k16105	FBst0012187
21-60	2L:7525..25255318	l(2)k10237	FBst0314102
21-60	2L:7525..25255318	l(2)k15306
21-60	2L:7525..25255318	l(2)k11021
21-60	2L:7525..25255318	l(2)k12602
21-60	2L:7525..25255318	l(2)k09216
21-60	2L:7525..25255318	l(2)08685
21-60	2L:7525..25255318	l(2)k14817
21-60	2L:7525..25255318	l(2)M167
21-60	2L:7525..25255318	l(2)k09005
21-60	2L:7525..25255318	l(2)k13217	FBst0301769
21-60	2L:7525..25255318	l(2)s4989	FBst0314188
21-60	2L:7525..25255318	l(2)CA7	2 stocks
21-40	2L:7525..22677528	e(if)1
21-40	2L:7525..22677528	l(2)cl-L3	3 stocks
36C2-37B10	2L:17154052..19035083	l(2)00455b
36E-37C	2L:17817473..19217604	l(2)SH2209
36E-37B	2L:17817473..19085148	Eth-AR209
36E4-38A7	2L:18093203..19938589	fs(2)eo3	2 stocks
36E4-37B10	2L:18093203..19035083	pre	2 stocks
36F7-37B7	2L:18598386..18971200	l(2)37Ab	2 stocks
37A1-37A2	2L:18684442..18766548	l(2)k13805	FBst0314147
37A4-37A4	2L:18782929..18813129	l(2)SH0895
37A4-37A4	2L:18782929..18813129	l(2)SH0420

*Insertions (cytology mapped)* [Export into hitlist]
36A-37E	2L:16411602..19531130	P{1010}GC-1
37A-37A	2L:18684442..18822138	P{wG}2
37A-37A	2L:18684442..18822138	P{hsp26-lacZ}37A
37A1-37A2	2L:18684442..18766548	P{lacW}k03302
37A2-37A4	2L:18725495..18813129	TI{TI}ham[V5]
37A2-37A3	2L:18725495..18782928	P{lacW}k07012
37A2-37A2	2L:18725495..18766548	P{(-FRT.0RPT)hs-w.hs-EGFP}37A2
37A2-37A2	2L:18725495..18766548	P{RS5r}5-HA-1058
37A4-37A4	2L:18782929..18813129	P{XP}d02636

*Insertions (sequence mapped)* [Export into hitlist]
37A2	2L:18725683..18725683	Mi{MIC}CG10348[MI07803]	FBst0044710
37A2	2L:18732506..18732506	P{XP}d00627[d00627]	FBst0085397
37A2	2L:18732675..18732675	P{XP}d07144
37A2	2L:18732918..18732918	P{RS5}5-HA-1058
37A2_r6	2L:18732974..18732974	P{lacW}l(2)k13805[k13805]	FBst0314147
37A2	2L:18733118..18733118	P{EPgy2}EY22121	FBst0022537
37A2	2L:18736179..18736179	PBac{PB}c06381
37A2	2L:18739106..18739106	Mi{MIC}MI07605	FBst0043741
37A2	2L:18742249..18742249	PBac{RB}e02897
37A2	2L:18742258..18742258	PBac{RB}e02898a
37B1	2L:18742521..18742521	P{GT1}BG02482	FBst0012758
37A2-37A2	2L:18743079..18743079	P{(FRT.7RPT)hs-w.hs-EGFP}37A2
37A2	2L:18753433..18753444	P{XP}d10289
37A2	2L:18753583..18753583	P{EPgy2}EY06888	FBst0016767
37A2	2L:18756383..18756383	P{GSV6}GS15530	FBst0323509
37A2	2L:18762987..18762987	Mi{MIC}ham[MI04331]	FBst0037442
37A2	2L:18764161..18764161	PBac{WH}ham[f00703]	FBst0085186
37A3	2L:18767067..18767067	P{Mae-UAS.6.11}ham[LA00005]	2 stocks
37A3	2L:18768921..18769096	PBac{WH}ham[f07061]
37A4	2L:18790800..18790800	PBac{WH}f07697
36E-37C	2L:18796212..18796261	P{lacW}l(2)SH2209[SH2209]
37A4	2L:18796257..18796299	P{XP}d00905

*Deleted segments (sequence mapped)* [Export into hitlist]
36E6--37B1	2L:18151698..18823590	Df(2L)ED1196	2 stocks
36E6--37A2	2L:18151698..18732918	Df(2L)ED1186	FBst0313288
36F6--37A2	2L:18571864..18732675	Df(2L)Exel6041	FBst0007523
36F7--37C5	2L:18617225..19158447	Df(2L)ED1203	2 stocks
36F7--37B1	2L:18617225..18823590	Df(2L)ED1198	FBst0313369
36F7--37B1	2L:18617225..18823572	Df(2L)ED1195	FBst0313289
36F7--37A2	2L:18617225..18732918	Df(2L)ED1187	FBst0313368
37A1--37A4	2L:18689053..18795820	Df(2L)Exel7071	FBst0007843
37A2--37B6	2L:18753432..18943942	Df(2L)Exel7072	FBst0007844

*Duplicated segments (sequence mapped)* [Export into hitlist]
37A2-37B1	2L:18733363..18824907	Dp(2;3)GV-CH321-95I21	FBst0090660
37A3-37B1	2L:18772315..18867898	Dp(2;3)GV-CH321-40G22	FBst0090296
37A3-37B3	2L:18779045..18888762	Dp(2;3)GV-CH321-72E07	FBst0090515

*Deleted segments (cytology mapped)* [Export into hitlist]
36B2--37A2	2L:16824976..18766548	Df(2L)H68
36C--37D2	2L:17093816..19368297	Df(2L)TW330	FBst0008823
36C2--37B10	2L:17154052..19035083	Df(2L)TW137	3 stocks
36D--40F	2L:17552486..22677528	Df(2L)b10-4
36D1--37C7	2L:17552486..19217604	Df(2L)VA21	FBst0008829
36D1--37C5	2L:17552486..19168098	Df(2L)VA18	2 stocks
36E1--37D5	2L:17817473..19405286	Df(2L)OD9
36E--37D2	2L:17817473..19368297	Df(2L)VA22	FBst0008828
36E--37B10	2L:17817473..19035083	Df(2L)TW203	FBst0008833
36E1--37A	2L:17817473..18822138	Df(2L)TW201	2 stocks
36E4--38A7	2L:18093203..19938589	Df(2L)TW50	2 stocks
36E4--37B13	2L:18093203..19085148	Df(2L)hk18	FBst0008824
36F2--37D1	2L:18258751..19292950	Df(2L)E71
36F2--37A2	2L:18258751..18766548	Df(2L)TW202	FBst0008827
36F6--37C7	2L:18501151..19217604	Df(2L)γ244
36F7--37D2	2L:18598386..19368297	Df(2L)VA16	2 stocks
36F7--37B7	2L:18598386..18971200	Df(2L)TW3	3 stocks
36F8--38C1	2L:18643593..20117316	Df(2L)pr-A8
36F9--37D2	2L:18655060..19368297	Df(2L)hk39
37A1--37D5	2L:18684442..19405286	Df(2L)VA20
37A1--37D5	2L:18684442..19405286	Df(2L)VA15
37A1--37D2	2L:18684442..19368297	Df(2L)VA14
37A1--37D2	2L:18684442..19368297	Df(2L)VA25
37A2--37A3	2L:18725495..18782928	Df(2L)2.3-59S16

*Duplicated segments (cytology mapped)* [Export into hitlist]
30C--37B	2L:9589829..19085148	Dp(2;2)168
33A--40B	2L:11680786..21929711	Dp(2;2;2)I
34A--37E	2L:12778077..19531130	Dp(2;2)dp-b
35C--37A	2L:15063840..18822138	Dp(2;2)m-3
36B--38A	2L:16765030..20000958	Dp(2;2)m-12
36C--39D	2L:17093816..21512721	Dp(2;2)m15

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
21A-58B	2L:7525..22128418	In(2LR)CA10
21E-59C	2L:518419..23139064	In(2LR)434.37
21F-40F	2L:1086655..22677528	In(2L)DTD94
21F-57C	2L:1086655..21199299	In(2LR)Dem1-13
22A-59C	2L:1326938..23139064	In(2LR)RBR104
22A-40E	2L:1326938..22148236	In(2L)V11-3
22D-57A	2L:2132200..20683849	In(2LR)KB
22F-60A	2L:2425050..23989883	In(2LR)JHI1
22F-58E	2L:2425050..22584651	In(2LR)A81414
22F-40B	2L:2425050..21929711	In(2L)Mg88
23E-40D	2L:3218267..22061076	In(2L)SMG7
24D-58B	2L:3912566..22128418	In(2LR)pc83
24D-56F	2L:3912566..20361757	In(2LR)JHI2
26A-59D	2L:5831062..23434601	In(2LR)JHI4
26A-38D	2L:5831062..20687000	In(2L)JHI29
26-56F	2L:5831062..20361757	In(2LR)SD-YT186
26A-56D	2L:5831062..19570458	In(2LR)JHI3
26F-59E	2L:6583041..23562485	In(2LR)Su(bw[D])131
27C-37F	2L:6839039..19673576	In(2L)Mg86
28E-37E	2L:8060239..19531130	In(2L)RBR2
30A-59E2	2L:9059864..23531731	In(2LR)bw[85f4]
30B-39F	2L:9362424..21731512	In(2L)JHI55
30B-39E	2L:9362424..21684084	In(2L)JHI54
30B-38A	2L:9362424..20000958	In(2L)JHI53
30E-59D	2L:9880190..23434601	In(2LR)30E;59D
30E-38F	2L:9880190..20966124	In(2L)RBR141
30E-37A	2L:9880190..18822138	In(2L)M
30F-39A	2L:9920730..21175048	In(2L)ZP4
31B-38E	2L:10170694..20812419	In(2L)JHI59
31C-57E	2L:10280568..21549017	In(2LR)RBR116
32B-40D	2L:10774976..22061076	In(2L)JHI61
33A-56D	2L:11680786..19570458	In(2LR)434.38
33A-37D	2L:11680786..19427708	In(2L)ZP6
33A-37B	2L:11680786..19085148	In(2L)AWI11
33B-60B	2L:11901328..24156611	In(2LR)JHI6
33B-39A	2L:11901328..21175048	In(2L)K24
33E-39D	2L:12313075..21512721	In(2L)Dem3-5
33E-38D	2L:12313075..20687000	In(2L)JHI66
34A-59E	2L:12778077..23562485	In(2LR)Dem1-14
34A-58F	2L:12778077..22675646	In(2LR)E1
34A-39A	2L:12778077..21175048	In(2L)JHI68
34C-59C	2L:13428843..23139064	In(2LR)34C;59C
34C-39E	2L:13428843..21684084	In(2L)IF
34D-38F	2L:13702163..20966124	In(2L)JHI69
34D4-40F	2L:13833390..22677528	In(2L)b[91l9]
34D4-40E	2L:13833390..22148236	In(2L)b89e100
34E-60F	2L:13858652..25255318	In(2LR)s1
34E-38E	2L:13858652..20812419	In(2L)JHI70
35A-40D	2L:14129306..22061076	In(2L)JHI71
35-39	2L:14129306..21731512	In(2L)SD-YT236
35B-58E	2L:14364253..22584651	In(2LR)RBR120
35B-57F	2L:14364253..21758515	In(2LR)SMG9
35B-39F	2L:14364253..21731512	In(2L)35B-39F
35B-39E	2L:14364253..21684084	In(2L)AWI14
35B2-39D	2L:14463511..21512721	In(2L)TE35B-220
35C-40A	2L:15063840..21858141	In(2L)88d28b
35D-40D	2L:15271254..22061076	In(2L)89e68
35D-57B	2L:15271254..21107330	In(2LR)RBR147
35F-39E	2L:16209134..21684084	In(2L)JHI72
36C2-37C1	2L:17154052..19150331	In(2L)dl[H]
36E-59D	2L:17817473..23434601	In(2LR)B7
36F-57B	2L:18188235..21107330	In(2LR)C251
37A-40A	2L:18684442..21858141	In(2L)PS17
37A-40A	2L:18684442..21858141	In(2L)PS14
37A2-37A6-38A6-38C1	2L:18725495..18766548	In(2L)TW47	FBst0300381

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
21A-59D	2L:7525..23434601	T(Y;2)JL12
21A-57F	2L:7525..21758515	T(Y;2)JL11
21B-97C	2L:22222..26733804	T(2;3)ML505
21C5-97D3	2L:456230..26875850	T(2;3)L141-51
22E-91F	2L:2298836..19261019	T(2;3)V12-1-41
24D-97D	2L:3912566..27054991	T(2;3)C317
24D-92A	2L:3912566..19695282	T(2;3)smg
24D4-78C	2L:4024161..21387543	T(2;3)H7
24F-96E	2L:4397911..25712016	T(2;3)L141-49
25B-92C	2L:4842677..20096867	T(2;3)Dem1-16
25C-100F	2L:5006015..32068446	T(2;3)3.29	FBst0300944
26B-98F	2L:5980165..29184631	T(2;3)Mg192
27A-98C	2L:6687692..28383802	T(2;3)Dem1-17
27B-92C	2L:6746144..20096867	T(2;3)SMG41
27E-92B1	2L:7069442..19766967	T(2;3)ML490
28C-95F	2L:7644957..24380882	T(2;3)Mg180
28D-101A	2L:7820557..32068446	T(2;4)DTD37
28D-97E	2L:7820557..27264826	T(2;3)DTD132
28F-94A	2L:8168305..22474684	T(2;3)Mg184
29F-94B	2L:8761615..22666854	T(2;3)AWT1
30-96	2L:9059864..26106891	T(2;3)Y1
30A-60F	2L:9059864..25255318	T(F2L;F2R)14
31B-94D	2L:10170694..23114712	T(2;3)Mg176
32C-77B	2L:10929251..20386379	T(2;3)Mg172
32E-96F	2L:11169361..26106891	T(2;3)ML472
33B-99F	2L:11901328..30597427	T(2;3)RBR77
33B-79F	2L:11901328..22718905	T(2;3)V13-1b
33B-94A	2L:11901328..22474684	T(2;3)W[rvX2]
33B2-101E	2L:11931642..32068446	T(2;4)b88g26
34A-79B	2L:12778077..22099823	T(2;3)Mg179
34C-96F	2L:13428843..26106891	T(2;3)JHT1
34C-78E	2L:13428843..21748736	T(2;3)DTD85
34D-75F	2L:13702163..19164830	T(2;3)C124
35B-96E	2L:14364253..25712016	T(2;3)V13-1
35D-79F	2L:15271254..22718905	T(2;3)L141-4