Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
99B9-99B10	3R:29741972..29745092	Wdr24	7 stocks
99B10-99B10	3R:29745209..29746083	asRNA:CR46109
99B10-99B10	3R:29745337..29747513	IntS11	7 stocks
99B10-99B10,99B-99B,99B6-99B10	3R:29747704..29749163	ATPsynγ	6 stocks
99B10-99B10	3R:29749219..29754528	yata	12 stocks
99B10-99B10	3R:29755190..29759040	lncRNA:CR44953	FBst0302472
99B10-99C1,99B7-99B11,99B9-99B10	3R:29765995..29794113	kay	46 stocks
99B11-99B11	3R:29774324..29775051	lncRNA:CR46110
99C1-99C1	3R:29779273..29780452	fig	4 stocks
99C1-99C1	3R:29794597..29795805	sro	6 stocks
99C1-99C1	3R:29795697..29799354	Rnb	7 stocks
99C1-99C1	3R:29799658..29801584	Drice	9 stocks
99C1-99C1	3R:29801599..29802945	Etfb	8 stocks
99C1-99C1	3R:29803196..29804389	CG7789	4 stocks
99C1-99C2,99C1-99C2,99B-99B,99C1-99C2,99B-99B,99B-99C,99B-99C,99B8-99B10	3R:29804290..29807127	ncd	32 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
81-100	3R:3461351..32068446	cant	2 stocks
81-100	3R:3461351..32068446	l(3)cl-R3	2 stocks
86C-100F	3R:10473726..32068446	mei-P44
97F-100F	3R:27264827..32068446	Rnase1
99A6-99C1	3R:29304701..29806752	slug	2 stocks
99A6-99C1	3R:29304701..29806752	ren	2 stocks
99B-99B	3R:29468941..29775722	l(3)99Ba
99B7-99B11	3R:29667240..29775722	l(3)A164.1M3
99B7-99B10	3R:29667240..29768086	l(3)05218
99B8-99E3	3R:29692452..30262359	M(3)99E
99B8-99B10	3R:29692452..29768086	l(3)06734
99C-99C	3R:29775723..29957664	anon-99Ce
99C-99C	3R:29775723..29957664	Jon99Co

*Insertions (cytology mapped)* [Export into hitlist]
98--99	3R:27434248..30597427	P{UAS-y.RNAi}5F-98-99
99A--99B	3R:29184632..29775722	P{Hs-Sox70D}F-13
99B-99B	3R:29468941..29775722	P{lacW}ms(3)CB27[CB27]
99B-99B	3R:29468941..29775722	P{Δ2-3}99B	39 stocks
99B-99B	3R:29468941..29775722	P{Ddc[+4]7.6}l(3)99Ba[CZ-12]
99B-99B	3R:29468941..29775722	P{lacW}l(3)CB24[CB24]
99B-99B	3R:29468941..29775722	P{lacW}Y603
99B-99B	3R:29468941..29775722	P{Mcp-w#12}43
99B7--99B11	3R:29667240..29775722	P{lacW}S020004a
99B7-99B10	3R:29667240..29768086	P{PZ}l(3)05218[05218]
99B8-99B10	3R:29692452..29768086	P{PZ}l(3)06734[06734]
99B9-99B10	3R:29717664..29768086	PBac{RB5.WH5}Wdr24[1]	FBst0038448
99B9-99B10	3R:29717664..29768086	P{lacW}k08926a	FBst0301600
99B10-99C1	3R:29742875..29806752	P{GT1}kay[BG01550]
99B10-99C1	3R:29742875..29806752	P{lacW}kay[S135103]
99B10_r6-99B10_r6	3R:29742875..29768086	P{p65AD.G4HACK}99B10
99B10-99B10	3R:29742875..29768086	P{RS5r}5-SZ-3101
99B10-99B10	3R:29742875..29768086	TI{TI}IntS11[StrepII-3XFLAG]	FBst0605882
99B10-99B10	3R:29742875..29768086	P{3'hs-hig.HA}yata[KE2.1]
99B10-99B10	3R:29742875..29768086	P{RS3r}CB-6214-3
99B10-99B10	3R:29742875..29768086	P{RS3r}CB-0784-3
99B11-99B11	3R:29768087..29775722	P{GSV6}GS12120
99C-99C	3R:29775723..29957664	P{GMroX1}99C
99C1-99C1	3R:29775723..29806752	TI{TI}Drice[V5.TurboID]
99C1-99C1	3R:29775723..29806752	P{?EP}Drice[Δ1]
99C1-99C1	3R:29775723..29806752	P{RS5r}5-HA-1081

*Insertions (sequence mapped)* [Export into hitlist]
99B10	3R:29743930..29743930	PBac{WH}Wdr24[f06205]	FBst0018948
99B10-99B10	3R:29744821..29744821	PBac{SAstopDsRed}LL08213	FBst0328759
99B10-99B10	3R:29745051..29745051	P{GawB}Wdr24[NP2486]	FBst0303082
99B10	3R:29745253..29745253	PBac{RB}e00989	FBst0085543
99C2	3R:29748823..29748823	P{EPgy2}ATPsynγ[EY03351]	FBst0015641
99B10	3R:29748823..29748823	P{GSV1}GS39	FBst0308043
99B10-99B10	3R:29749269..29749269	P{hs-hig.HA}yata[25A]
99B10-99B10	3R:29749271..29749636	P{wHy}yata[DG08312]
99B10	3R:29749277..29749277	P{GSV6}GS17468	FBst0320552
99B10-99B10	3R:29757655..29757655	P{GawB}lncRNA:CR44953[NP0389]	FBst0302472
99B10	3R:29758913..29759015	P{XP}d04661	FBst0085441
99B10	3R:29759062..29759062	PBac{PB}c05383
99C2	3R:29759231..29759231	P{SUPor-P}KG09047	FBst0015155
99B10	3R:29759255..29759255	P{RS3}CB-0784-3	FBst0325883
99B10	3R:29759255..29759255	P{GSV6}GS14625	FBst0323146
99C2	3R:29759255..29759255	P{SUPor-P}KG01438
99B10	3R:29759331..29759331	P{GSV2}GS7354	FBst0322394
99B10	3R:29760181..29760181	Mi{MIC}MI13621
99B10	3R:29760183..29760183	P{XP}d01491
99B10	3R:29760185..29760185	P{XP}d02238
99C2-99C2	3R:29760186..29760186	P{EP}EP3013
99B10-99B10	3R:29762729..29762729	PBac{IT.GAL4}1443-G4	FBst0077618
99B10-99B10	3R:29762732..29762732	PBac{IT.GAL4}2043-G4	FBst0065711
99B10	3R:29762986..29762986	PBac{WH}f02595
99B10	3R:29763224..29763224	PBac{RB}e01353
99B10	3R:29763597..29763597	P{XP}d00146
99B10	3R:29763626..29763626	PBac{WH}f02525
99B10-99B10	3R:29763833..29763833	PBac{IT.GAL4}0839-G4	FBst0063845
99B10,99B10-99B10	3R:29764132..29764132	P{RS5}5-HA-2369
99B10-99B10	3R:29765557..29765557	P{GawB}c189[c189]
99B10	3R:29765557..29765557	P{GSV7}GS20827	FBst0321132
99B10	3R:29765590..29765590	P{RS3}CB-6214-3	FBst0326511
99B10	3R:29765692..29765692	P{GSV6}GS11366
99C2-99C2	3R:29765737..29765737	P{EP}kay[EP3084]
99B10	3R:29765791..29765791	P{GSV6}GS13876
99C2	3R:29765920..29765920	P{SUPor-P}KG06253
99B10-99B10	3R:29765958..29766323	P{GawB}NP1344	FBst0315372
99B10-99B10	3R:29765960..29765960	P{GawB}NP4496	FBst0316198
99B10	3R:29765960..29765960	P{XP}d07926
99B10	3R:29765960..29765960	P{XP}d04942
99B10	3R:29765960..29765960	P{XP}d09807
99B10	3R:29765967..29765967	P{GSV6}GS13213	FBst0312590
99B10-99B10	3R:29765967..29765967	P{EP}EP902
99B10-99B10	3R:29765968..29765968	P{GawB}NP3518	FBst0303395
99B10-99B10	3R:29765992..29765992	PBac{IT.GAL4}0793-G4	FBst0063519
99B10_r5	3R:29765993..29765993	PBac{SAstopDsRed}LL03872	FBst0319750
99B10	3R:29766033..29766033	P{RS5}5-SZ-3101
99B10	3R:29767442..29767442	P{EPgy2}kay[EY12710]	FBst0020843
99B11	3R:29769667..29769667	Mi{MIC}kay[MI09456]	FBst0052165
99B11	3R:29772174..29772174	P{GSV6}GS13272
99B11	3R:29772174..29772174	P{GSV7}GS21235	FBst0321351
99B11	3R:29772666..29772666	PBac{RB}kay[e01390]
99B11	3R:29772831..29772831	P{GSV6}GS14328	FBst0323039
99C2	3R:29772917..29772917	P{EPgy2}kay[EY00283]	FBst0015018
99B11-99B11	3R:29774138..29774138	PBac{SAstopDsRed}LL07743	FBst0328663
99B11	3R:29774342..29774342	PBac{RB}kay[e03091]
99B11-99B11	3R:29774751..29774852	P{wHy}kay[DG24501]
99B11-99B11	3R:29774765..29774869	P{GawB}kay[NP3511]	FBst0303393
99B11	3R:29774843..29774843	P{XP}kay[d02473]	FBst0085417
99C3	3R:29778043..29778043	P{EPgy2}kay[EY01644]	FBst0015077
99C1	3R:29781917..29781917	Mi{MIC}kay[MI10631]	FBst0055518
99C1-99C1	3R:29782492..29782492	P{PTT-GC}kay[CC01156]	FBst0051549
99C1	3R:29782526..29782526	P{EPgy2}kay[EY08232]	FBst0016882
99C1	3R:29782564..29782564	P{GSV2}GS50736	FBst0324372
99C1	3R:29782667..29782667	P{RS5}kay[5-HA-1081]	FBst0327099
99C3	3R:29782799..29782799	P{GT1}kay[BG01495]
99C1_r6	3R:29785702..29785702	Mi{PT-GFSTF.0}kay[MI05333-GFSTF.0]	FBst0063175
99C1	3R:29785702..29785702	Mi{MIC}kay[MI05333]	FBst0042313
99C1	3R:29793948..29793948	PBac{WH}kay[f02002]
99C1	3R:29799015..29799016	PBac{WH}Rnb[f04616]	FBst0018790
99C1	3R:29799288..29799288	PBac{WH}Rnb[f05400]	FBst0018858
99C1-99C1	3R:29799291..29799291	PBac{754.P.FSVS-0}Rnb[CPTI002822]	FBst0325324
99C1	3R:29799345..29799345	P{GSV6}GS16175	FBst0323771
99C1_r5	3R:29799741..29799741	PBac{SAstopDsRed}LL05289	FBst0319133
99C1-99C1	3R:29801363..29801363	P{EP}Drice[GE28489]
99C1	3R:29801494..29801494	Mi{MIC}Drice[MI13913]	FBst0059231
99C1	3R:29803049..29803049	PBac{PB}Etfb[c06979]	FBst0017794
99C1_r5	3R:29803081..29803081	PBac{SAstopDsRed}LL04678	FBst0319934
99C1-99C1	3R:29803081..29803081	PBac{SAstopDsRed}LL07722	FBst0328656
99C1	3R:29803081..29803081	PBac{WH}f00728
99C1	3R:29803084..29803084	PBac{WH}f05891
99C1	3R:29806734..29806734	P{GSV6}GS10353	FBst0310504
99C1	3R:29806751..29806751	P{EPgy2}ncd[EY03397]	FBst0019672
99C1-99C1	3R:29806752..29806752	P{PZ}ncd[05884]	FBst0011676

*Deleted segments (sequence mapped)* [Export into hitlist]
99A1--99B10	3R:29191671..29763597	Df(3R)BSC846	FBst0027919
99B5--99F1	3R:29468941..30387804	Df(3R)L127	3 stocks
99B1--99B10	3R:29479258..29759255	Df(3R)ED13102	FBst0313261
99B5--99C2	3R:29621303..29821399	Df(3R)BSC547	FBst0025075
99B10--99B10	3R:29745253..29760185	Df(3R)Exel9025	FBst0007995
99B10--99C2	3R:29765590..29806857	Df(3R)ED10993	FBst0313237
99B10--99C1	3R:29765590..29782667	Df(3R)ED6315	2 stocks

*Duplicated segments (sequence mapped)* [Export into hitlist]
99B7-99C1	3R:29689685..29800191	Dp(3;2)GV-CH321-23I13	FBst0090212
99C1-99C6	3R:29803528..29895567	Dp(3;2)GV-CH321-67H17	FBst0089832

*Deleted segments (cytology mapped)* [Export into hitlist]
98F--100C	3R:28855899..31613779	Df(3R)Mg32
99A--99B	3R:29184632..29775722	Df(3R)KE
99A1--99B11	3R:29184632..29775722	Df(3R)Dr-rv1	2 stocks
99A5--99B11	3R:29246113..29775722	Df(3R)323
99A6--99C1	3R:29304701..29806752	Df(3R)01215	2 stocks
99B8--99B10	3R:29692452..29768086	Df(3R)ca[nd7]
99B8--99B10	3R:29692452..29768086	Df(3R)ca[nd5]
99B8--99B10	3R:29692452..29768086	Df(3R)ca[nd1]	6 stocks
99B8--99B10	3R:29692452..29768086	Df(3R)ca[nd6]
99B8--99B10	3R:29692452..29768086	Df(3R)ca[nd8]

*Duplicated segments (cytology mapped)* [Export into hitlist]
83E1--100D2	3R:6192284..31837725	Dp(3;Y)Tpl7
83E1--99E	3R:6192284..30323585	Dp(3;Y)Tpl11
88D--100B	3R:14675783..31275051	Dp(3;3)SMG35
94D--99E	3R:22827296..30323585	Dp(3;3)M95A[+]16
96A1--100F	3R:24380883..32068446	Dp(3;3)M96C[+]16
96A20--99F4	3R:24754797..30452016	Dp(3;3)M96C[+]18
98A--100C	3R:27434248..31613779	Dp(3;3)M77
98A2--100F2	3R:27466264..32068443	Dp(3;3)537
98B2--100F5	3R:27702971..32068446	Dp(3;3)501
98F--100B	3R:28855899..31275051	Dp(3;3)M78
98F14--100F	3R:29176379..32068446	Dp(3;1)B152	3 stocks
98F14--100B8	3R:29176379..31256252	Dp(3;1)48
98F14--100B7	3R:29176379..31220010	Dp(3;1)1A
98F14--100B5	3R:29176379..31204193	Dp(3;1)79
98F14--100A2	3R:29176379..30716531	Dp(3;1)152P
98F14--99F10	3R:29176379..30594438	Dp(3;1)93
98F14--99F8	3R:29176379..30579251	Dp(3;1)R15
98F14--99F8	3R:29176379..30579251	Dp(3;1)19
98F14--99F8	3R:29176379..30579251	Dp(3;1)88
98F14--99F1	3R:29176379..30365797	Dp(3;1)3
98F14--99E3	3R:29176379..30262359	Dp(3;1)124P	2 stocks
98F14--99E2	3R:29176379..30225886	Dp(3;1)97
98F14--99D9	3R:29176379..30152942	Dp(3;1)R10
98F14--99D5	3R:29176379..30109892	Dp(3;1)35
98F14--99C7	3R:29176379..29950131	Dp(3;1)78
98F14--99C6	3R:29176379..29919518	Dp(3;1)74
98F14--99B10	3R:29176379..29768086	Dp(3;1)45B
99A8--99D2	3R:29396094..30024750	Dp(3;1)R14
99A9--99C6	3R:29399124..29919518	Dp(3;1)52
99B2--99C6	3R:29505910..29919518	Dp(3;1)165P
99B4--99C1	3R:29573909..29806752	Dp(3;1)27
99B5--100A1	3R:29610878..30656979	Dp(3;1)138P
99B5--99F1	3R:29610878..30365797	Dp(3;Y)L127

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
81-99E	3R:3461351..30323585	In(3R)D116.8
81-99B	3R:3461351..29775722	In(3R)CA52
83-99	3R:5364156..30597427	In(3R)LD30
84E-99E	3R:7760099..30323585	In(3R)AL14
86F-100E	3R:11785613..32068441	In(3R)M
87A-100F	3R:11871713..32068446	In(3R)St-C
87B-100F	3R:12147055..32068446	In(3R)IW13
89A-99D	3R:15623020..30152942	In(3R)St-M
89E2-99F	3R:16791761..30597427	In(3R)abd-A[M1]
89E3-100C	3R:16847366..31613779	In(3R)Abd-B[iab9-48]
92C-99F	3R:19971233..30597427	In(3R)IW22
92D-100A	3R:20096868..30928228	In(3R)92D;100A
92E-100E	3R:20259178..32068441	In(3R)92E-100E
93E-100F	3R:21400810..32068446	In(3R)ML193
93F-99C	3R:21645980..29957664	In(3R)V16
94C-99F	3R:22666855..30597427	In(3R)VV10
96A-100D	3R:24380883..31917440	In(3R)Mg70
96B-99E	3R:24840519..30323585	In(3R)Dem4-5
96F-100B	3R:25712017..31275051	In(3R)St-G
97A-100A	3R:26106892..30928228	In(3R)SM28
99B-100F	3R:29468941..32068446	In(3R)Dem2-10

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
99B10--99B8-101F1--102D1	3R:29742875..29768086	T(3;4)d