FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000021317
Interaction Network
Interactions Browser links
Kmn1 network
Mis12 network
Reported Interactions
FBrf0200394-61.coIP.MS
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

dmMis12

bait

Protein A tag

Kmn1 

dmNsl1R

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from endogenous gene.

FBrf0208678-6.Y2H
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Kmn1 

Nsl1

bait

fused to GAL4 DNA-binding domain

Mis12

prey

fused to GAL4 activation domain

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).

Two-hybrid system: yeast GAL4-BD/GAL4-AD

FBrf0218395-3686.DPiM
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Kmn1 
unspecified role
Kmn1 
unspecified role
Kmn1 
unspecified role
unspecified role
unspecified role
unspecified role
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

HGScore = 181.52030

FBrf0231098-10.XL.MS
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Kmn1 

Kmn1

neutral component

Hpc tag

Kmn1 

Kmn1

neutral component

Hpc tag

Kmn1 

Kmn1

neutral component

Hpc tag

Mis12

neutral component

FLAG tag

Mis12

neutral component

FLAG tag

Mis12

neutral component

FLAG tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Kmn1, Mis12 and either Nnf1a or Nnf1b were coexpressed in E. coli (otherwise proteins were insoluble), then purified by gel filtration. The complex was then treated with BS2G bi-functional crosslinking reagent, and cross-links were mapped by mass spectrometry.

Within either the Kmn1-Mis12-Nnf1a or Kmn1-Mis12-Nnf1b trimeric complexes, all three subunits make extensive contacts with each other, extending along their entire sequences.

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

FBrf0231098-5.CH.MW
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Kmn1 

Kmn1

neutral component

Hpc tag

Kmn1 

Kmn1

neutral component

Hpc tag

Kmn1 

Kmn1

neutral component

Hpc tag

Mis12

neutral component

FLAG tag

Mis12

neutral component

FLAG tag

Mis12

neutral component

FLAG tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Kmn1, Mis12 and either Nnf1a or Nnf1b were coexpressed in E. coli (otherwise proteins were insoluble), then analyzed by gel filtration to assess complex formation.

Kmn1 and Mis12 interact as part of a trimeric complex with either Nnf1a (64.5 kDa) or Nnf1b (67.1 kDa).

Interaction in vitro; proteins produced as a recombinant fusion proteins in bacterial system.

FBrf0231099-11.HDX.MS
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Mis12

neutral component

His tag

Mis12

neutral component

His tag

Mis12

neutral component

His tag

Kmn1 

Nsl1

neutral component
Kmn1 

Nsl1

neutral component
Kmn1 

Nsl1

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
interaction region
necessary binding region
aa 134-149
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion protein in bacterial system.

A Nnf1a-Mis12-Kmn1 trimer ( 1:1:1 ) was analysed by mass spectrometry to identify regions protected from hydrogen-deuterium (H/D), indicative of interacting surfaces.

FBrf0231099-15.coIP.MS
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Mis12

bait

GFP tag

Kmn1 

Nsl1

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
coiled coil domain
sufficient binding region
aa 103-181
coiled coil domain residues 112-115
mutation disrupting interaction
aa 112-115

L112D, L115D

coiled coil domain residues 126-129
mutation disrupting interaction
aa 126-129

L126D, L129D

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from endogenous gene.

FBrf0231099-16.HDX.MS
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Kmn1 

Nsl1

neutral component
Kmn1 

Nsl1

neutral component
Kmn1 
Kmn1 

Nsl1

neutral component
Kmn1 

Mis12

neutral component

Mis12

neutral component

Mis12

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Kmn1 
central region
necessary binding region
aa 104-154
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion protein in bacterial system.

A Nnf1a-Mis12-Kmn1 trimer ( 1:1:1 ) was analysed by mass spectrometry to identify regions protected from hydrogen-deuterium (H/D), indicative of interacting surfaces.

FBrf0231099-20.coIP.MS
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Kmn1 

Nsl1

bait

GFP tag

Kmn1 

Mis12

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Kmn1 
central region
sufficient binding region
aa 102-157
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from endogenous gene.

FBrf0231099-7.PD.MS
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Kmn1 

Nsl1

neutral component

His tag

Kmn1 

Nsl1

neutral component

His tag

Kmn1 

Nsl1

neutral component

His tag

Mis12

neutral component

Mis12

neutral component

Mis12

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion protein in bacterial system.

Kmn1, Mis12 and Nnf1a form a trimeric complex in this assay. The complex size was calculated by mass spectrometry to be 72.02 kDa, consistent with a 1:1:1 stoichiometry.

Kmn1, Mis12 and Nnf1a were mixed in various combinations, and complex formation was observed by size exclusion chromatography.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (5)