FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Assay: RNA-Seq_mE3085_Dpse_AM_head
Open Close
General Information
Name
RNA-Seq_mE3085_Dpse_AM_head
Species
D. pseudoobscura pseudoobscura
Assay type
FlyBase ID
FBlc0001098
Project
Data Provider
Title
RNA-Seq of D. pseudoobscura, MV2-25 strain, adult male head.
Biosample Source
Overview
Strain
Other tissues studied
Cell component
Cell line
Key genes
Methods
Sample preparation

Adults were aged 8 days post-eclosion and sorted by sex. Collection of adult heads: frozen whole flies were placed on 10.8 x 10.8 cm ceramic plates frozen on dry ice; forceps were used to dissect 400-500 heads for subsequent RNA extraction.

Biosamples used (1)
Biosample
Type
Title
D. pseudoobscura, MV2-25 strain, adult male head, source for RNA.
Assay Details
Key genes
Protocol

mRNA was purified from total RNA using a QIAGEN Oligotex mRNA kit (Valencia, California). mRNA quality and quantity was determined by Bioanalyzer (Agilent, Santa Clara, California) and 260/280 ratio from Nanodrop ND-1000 UV spectrophotometer. Double-stranded cDNAs were made from mRNA using the Superscript II (Invitrogen) and random hexamer primers (Invitrogen). DNA fragment libraries were prepared for sequencing by addition adaptor oligonucleotides; cDNA templates were size-selected by gel purification (200bp +/- 25bp), then amplified by PCR using oligo-specific primers and Phusion polymerase. The amplified product was purified using a QIAquick column.

Mode of Assay

Read length (bases):75

Comments
Associated Data
Size
Files
Additional Information
Synonyms and Secondary IDs (3)
Reported As
Symbol Synonym
RNA-Seq_mE3085_Dpse_AM_head
modENCODE_3085
Name Synonyms
RNA-Seq of D. pseudoobscura, MV2-25 strain, adult male head.
Secondary FlyBase IDs
    References (2)