FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Sequence Feature: Dmel\pA_site_004061
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General Information
Symbol
Dmel\pA_site_004061
Species
D. melanogaster
Feature type
polyA_site
FlyBase ID
FBsf0000774702
Collection
Associated gene
Genomic Location
Chromosome (arm)
3L
Sequence location

3L:4,074,077..4,074,077 [-]

Genomic Maps
Sequence Data
Length
Comments
Associated Information
Gene(s) (targeted or local)
Allele(s)
    Transcripts(s)
      Polypeptide(s)
        Construct
          Experimental Data
          Collection Information
          Collection: Lai_Polyadenylation_Site_Study
          Symbol
          Lai_Polyadenylation_Site_Study
          Title
          Profiling of polyadenylation sites and related motifs across various stages, tissues and cell lines of D. melanogaster.
          Source and Progenitors
          Species of derivation
          D. melanogaster
          Strain of derivation
          Vector of progenitor construct
          Description

          This study mapped over 200 million three-prime end reads to identify 62,032 polyadenylation sites in D. melanogaster, as well as the most common polyadenylation signal motifs. Alternative polyadenylation sites (often tissue- or stage-specific) were observed for almost two thirds of genes; three-prime UTR extensions were observed for 5,190 genes (compared to FlyBase R6.12).

          (Sanfilippo et al., 2017)
          Additional data
          Sample preparation
          Collection preparation
          Mode of assay
          Data analysis
          Cell lines
          Observed in
          Not observed in
          Collection: Moreira_Polyadenylation_Site_Study
          Symbol
          Moreira_Polyadenylation_Site_Study
          Title
          Profile of polyadenylation sites and related motifs in D. melanogaster, adult male.
          Source and Progenitors
          Species of derivation
          D. melanogaster
          Strain of derivation
          Vector of progenitor construct
          Description

          This study mapped about 47 million three-prime end reads to identify 52,844 polyadenylation sites in D. melanogaster (adult male), as well as the most common polyadenylation signal motifs.

          (Liu et al., 2017)
          Additional data
          Sample preparation
          Collection preparation
          Mode of assay
          Data analysis
          Cell lines
          Observed in
          Not observed in
          Collection: Kadener_Transcript_Ends_Study
          Symbol
          Kadener_Transcript_Ends_Study
          Title
          Profile of five-prime and three-prime transcript ends in D. melanogaster head transcriptome.
          Source and Progenitors
          Species of derivation
          D. melanogaster
          Strain of derivation
          Vector of progenitor construct
          Description

          This study used Exo-seq and RNaseH-seq to identify 11,293 high-confidence transcription start sites and 7,830 three-prime transcript ends, respectively, in adult head tissue of D. melanogaster.

          (Afik et al., 2017)
          Additional data
          Sample preparation
          Collection preparation
          Mode of assay
          Data analysis
          Cell lines
          Observed in
          Not observed in
          Comments

          total read count: 3901

          (Sanfilippo et al., 2017)

          female read count: 4

          (Sanfilippo et al., 2017)

          male read count: 659

          (Sanfilippo et al., 2017)

          embryo read count: 481

          (Sanfilippo et al., 2017)

          head read count: 2753

          (Sanfilippo et al., 2017)

          cell line read count: 4

          (Sanfilippo et al., 2017)

          polyA site supporting read count: 1282

          (Liu et al., 2017)
          Stocks (0)
          External Crossreferences and Linkouts ( 0 )
          Synonyms and Secondary IDs (3)
          Reported As
          Symbol Synonym
          chr3L:4074077..4074077:-
          (Sanfilippo et al., 2017)
          pA_site_004061
          r5:chr3L:4074077:-
          (Liu et al., 2017)
          Secondary FlyBase IDs
            References (3)