Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
5B8-5B8	X:5755492..5756710	asRNA:CR45528	FBst1023416
5B8-5B8	X:5755574..5759751	Nanp	8 stocks
5B8-5B8,5D-5D,5D-5D	X:5759908..5764203	MAPk-Ak2	12 stocks
5B8-5C2	X:5764553..5789576	Cep162	12 stocks
5B8-5C2	X:5765855..5770780	CG3097	3 stocks
5C2-5C2	X:5773023..5776647	CG42264	7 stocks
5C2-5C2	X:5777195..5781620	CG3108	4 stocks
5C2-5C2	X:5789487..5790919	CG15767	2 stocks
5C2-5C2	X:5790753..5790861	mir-4963
5C2-5C2	X:5790952..5791536	lncRNA:CR44832
5C2-5C2	X:5792140..5794543	CG12239	8 stocks
5C2-5C2	X:5804677..5805344	Cpr5C	2 stocks
5C2-5C2	X:5808954..5810158	Prosβ2R1	4 stocks
5C2-5C2	X:5810492..5811006	lncRNA:CR45529
5C2-5C2	X:5812273..5812977	CG44329
5C2-5C2	X:5814864..5815820	AgmNAT	3 stocks
5C2-5C3	X:5818559..5840823	CG15765	65 stocks
5C2-5C2	X:5831898..5832215	lncRNA:CR43264
5C2-5C2	X:5832298..5832368	tRNA:Glu-CTC-6-1Ψ

*Genes (mapped, but not to the sequence)* [Export into hitlist]
1-20	X:103615..23108331	l(1)EH275a
1-20	X:103615..23108331	ms(1)10
1-20	X:103615..23108331	l(1)M86.4
1-20	X:103615..23108331	l(1)U3
1-20	X:103615..23108331	mei-99	FBst0004882
1-20	X:103615..23108331	dh	FBst0001539
1-20	X:103615..23108331	l(1)L25.7
1-20	X:103615..23108331	l(1)M76.3
1-20	X:103615..23108331	l(1)K84.3
1-20	X:103615..23108331	l(1)Uc-1
1-20	X:103615..23108331	l(1)BP
1-20	X:103615..23108331	l(1)M95.1
1-20	X:103615..23108331	l(1)5-39-1
1-20	X:103615..23108331	ms(1)66
1-20	X:103615..23108331	ms(1)294
1-20	X:103615..23108331	l(1)K87.2
1-20	X:103615..23108331	mei-269
1-20	X:103615..23108331	ms(1)12
1-20	X:103615..23108331	l(1)VA624
1-20	X:103615..23108331	l(1)64	FBst0313556
1-20	X:103615..23108331	c(1)a
1-20	X:103615..23108331	l(1)14P11
1-20	X:103615..23108331	mei-160	FBst0004878
1B1-5C2	X:408583..5832775	fs(1)M41
3F3-5E8	X:3834116..6315088	l(1)TK128
3F3-5E8	X:3834116..6315088	maz
5A1-5E8	X:5475817..6315088	l(1)air4
5A-5B	X:5475817..5766002	l(1)5ABa
5A7-5E8	X:5602679..6315088	l(1)5AEa
5A7-5E8	X:5602679..6315088	l(1)5Aa
5A7-5D3	X:5602679..6078262	l(1)5ACa
5A7-5D3	X:5602679..6078262	l(1)5ACb
5A8-5C5	X:5613782..5878554	pbr
5A8-5C2	X:5613782..5832775	vtw
5A8-5C2	X:5613782..5832775	mus105	2 stocks
5A8-5C1	X:5613782..5766012	fs(1)M14	FBst0004606
5B-5B	X:5697153..5766002	Gpr5B

*Insertions (cytology mapped)* [Export into hitlist]
2B13--12B18	X:1860969..13757665	P{lacW}arm[G0268a]	FBst0314575
5B-5B	X:5697153..5766002	P{CaSpeR}cx30A.1
5B-5B	X:5697153..5766002	P{y(-loxP).(FRT.pro).C}5B
5B-5B	X:5697153..5766002	P{y(loxP.enh).(FRT.pro).C}5B
5B-5B	X:5697153..5766002	P{w[en.1]}18
5B-5B	X:5697153..5766002	P{y(loxP.enh).(-FRT).C}5B
5B8-5C2	X:5755036..5832775	P{GT1}Cep162[BG02427]
5B8-5B8	X:5755036..5765982	P{EP}MAPk-Ak2[GE3296]
5B8_r6-5B8_r6	X:5755036..5765982	PBac{Tub-GAL80.G}X-5B8
5C-5D	X:5766003..6198961	P{lacZ}X8-157A
5C-5C	X:5766003..5955320	P{GawB}Sep54
5C1-5C2	X:5766003..5832775	P{lacW}Act5C[G0117]	2 stocks

*Insertions (sequence mapped)* [Export into hitlist]
5B5-5B5	X:5755146..5755146	P{EP}EP1405	FBst0017004
5B8-5B8	X:5755182..5755182	P{GawB}NP4123
5B8-5B8	X:5755296..5755296	P{Adh-lacZ.mut.Adh-lacZ.wt.loxP.FRT}X178
5B8	X:5755303..5755303	P{XP}d01134
5B8-5B8	X:5755314..5755314	P{GawB}NP5095	FBst0303711
5B8-5B8	X:5755344..5755344	P{GawB}NP7196	FBst0316859
5B8	X:5755656..5755656	P{EPgy2}Nanp[EY18567]	FBst0016640
5B8	X:5755676..5755676	P{XP}Nanp[d05098]
5B8-5B8	X:5755757..5755757	P{EP}Nanp[G11008]	FBst1023416
5B8	X:5757560..5757560	PBac{y[+]-attP-3B}VK00038	2 stocks
5B8	X:5764118..5764118	P{EP}MAPk-Ak2[G265]	2 stocks
5C2	X:5764241..5764241	P{EPgy2}EY11791
5B6-5B6	X:5764791..5764791	P{EP}Cep162[EP390]	FBst0010091
5C2	X:5770561..5770561	P{XP}CG3097[d11614]
5C2	X:5770713..5770713	P{XP}CG3097[d09284]
5C2-5C2	X:5770737..5770737	P{EPg}CG3097[HP10141]	FBst0021863
5C2	X:5770897..5770897	P{XP}d00427
5C2	X:5770910..5770910	P{XP}d02584
5C2	X:5770910..5770910	P{EPgy2}EY18787
5C2	X:5770996..5770996	P{UASp-YFP.Rab39.Q69L}02	FBst0009822
5C2	X:5785376..5785376	PBac{RB}Cep162[e00457]	FBst0017858
5C2	X:5788036..5788036	P{XP}Cep162[d04424]
5C2	X:5792314..5792314	PBac{WH}CG12239[f04288]
5C2-5C2	X:5792624..5793315	P{Mae-UAS.6.11}CG12239[GG01683]
5B8	X:5793569..5793569	P{SUPor-P}CG12239[KG07913]	FBst0015122
5C2	X:5800105..5800105	Mi{MIC}MI10040
5C2	X:5806207..5806207	PBac{PB}c00214
5C2	X:5815880..5815880	P{XP}AgmNAT[d06145]	FBst0019231
5C2	X:5816085..5816085	Mi{MIC}MI12183
5C2	X:5819277..5819277	PBac{WH}CG15765[f02896]
5C2	X:5831765..5831765	Mi{ET1}CG15765[MB04213]

*Deleted segments (sequence mapped)* [Export into hitlist]
5A12--5D1	X:5679980..5965880	Df(1)ED6802	9 stocks
5A12--5C2	X:5679987..5770561	Df(1)Exel6236	FBst0007710
5B6--5D2	X:5746868..6039307	Df(1)BSC654	FBst0026506
5C2--5C6	X:5770561..5892790	Df(1)Exel6237	FBst0007711
5C2--5D3	X:5815880..6077612	Df(1)BSC724

*Duplicated segments (sequence mapped)* [Export into hitlist]
5A13--5C2	X:5690034..5783982	Dp(1;3)DC143	FBst0030283
5B6--5C3	X:5749488..5847531	Dp(1;3)DC144	FBst0030284
5C2--5C7	X:5809786..5903687	Dp(1;3)DC145	FBst0030285

*Deleted segments (cytology mapped)* [Export into hitlist]
2D--12B6	X:2083109..13754475	Df(1)w71b
3A10--12A8	X:2658572..13623898	Df(1)w70j
3B5--12A10	X:2753186..13646537	Df(1)w70e
3C--12B10	X:2804156..13757665	Df(1)LCD
5A8--5C5	X:5613782..5878554	Df(1)C149	2 stocks
5C2--5D6	X:5766013..6181605	Df(1)N73	2 stocks

*Duplicated segments (cytology mapped)* [Export into hitlist]
1A7--5C3	X:380430..5848081	Dp(1;1)L75.3
3A--11E	X:2328358..13346259	Dp(1;1)SM2
3A2--8C1	X:2354343..9003206	Dp(1;1)Gr
3C1--6F6	X:2804156..7116431	Dp(1;1)Bt
3C4--6A4	X:2970808..6516900	Dp(1;1)L73.7
3C11--7B3	X:3255075..7557502	Dp(1;1)A10.3
4C12--8F10	X:4668106..9709556	Dp(1;1)J2.1
4E2--6F2	X:5027641..7071415	Dp(1;1)4E-6F
4F--5E	X:5107107..6315088	Dp(1;1)hdp-b7
4F--5E	X:5107107..6315088	Dp(1;1)hdp-b6
4F9--5D4	X:5384035..6097304	Dp(1;1)y[bl]
5A--7A	X:5475817..7286017	Dp(1;2;1)AT	2 stocks

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
1A-10A	X:103615..11198803	In(1)T2
1A-7D	X:103615..8246254	In(1)T1
1B1-20D	X:408583..22716656	In(1)y[A74e]
1B1-20D	X:408583..22716656	In(1)y[A74b51]
1B1-20A	X:408583..21675680	In(1)y[A79d2]
1B1-20A	X:408583..21675680	In(1)y[A72d3]
1B1-20A	X:408583..21675680	In(1)y[89d68]
1B1-19E8	X:408583..21086629	In(1)y[88f86]
1B1-18D2	X:408583..19573161	In(1)y[88c63]
1B1-16D	X:408583..17841787	In(1)y[A79b21]
1B1-16C8	X:408583..17761755	In(1)y[A76b94]
1B1-11E3	X:408583..13217908	In(1)y[85f2]
1B-10A	X:408583..11198803	In(1)GJ5
1B1-9D	X:408583..10645358	In(1)y[A74c166]
1B4-6D8	X:466699..6863445	In(1)sc[7]	9 stocks
1C-10B	X:660484..11489173	In(1)65
1F-14A	X:1254810..16113516	In(1)C146
2B-5C	X:1475669..5955320	In(1)SMG1
2B5-20F	X:1660982..23108331	In(1)GA106
2B5-20A	X:1660982..21675680	In(1)VE891
2C3-7B1	X:2019122..7337287	In(1)HC207	2 stocks
2D-14F	X:2083109..16667591	In(1)Mg96
2D-7D1	X:2083109..7970075	In(1)sn[s-1-73]
2F-5E	X:2223442..6315088	In(1)IC2
3A-5E	X:2328358..6315088	In(1)C10
3B1-20F	X:2666235..23108331	In(1)GE257
3B1-20A	X:2666235..21675680	In(1)GE228
3B1-12F2	X:2666235..14718166	In(1)62b12
3C-20F	X:2804156..23108331	In(1)w[is]
3C2-20C	X:2845023..22597814	In(1)w[77d]
3C2-20B	X:2845023..22371346	In(1)w83c19
3C2-20B	X:2845023..22371346	In(1)w88f83
3C2-19E	X:2845023..21086629	In(1)w88c87
3C2-19E4	X:2845023..20921597	In(1)w[89e52]
3C2-18F	X:2845023..19887081	In(1)w[EM20]
3C2-18E	X:2845023..19747669	In(1)w[81f3]
3C2-18C	X:2845023..19555536	In(1)w8631-1A
3C2-17D	X:2845023..18803707	In(1)w[89e12]
3C2-16D	X:2845023..17841787	In(1)w79b3
3C2-12B9	X:2845023..13755214	In(1)z[+64b9]
3C2-9A2	X:2845023..9871237	In(1)w88c60
3C2-8F	X:2845023..9709556	In(1)w72b
3C2-7E	X:2845023..8465638	In(1)w[79b7]
3C3-20D2	X:2907915..22716656	In(1)w[m54l]
3C5-20A	X:2976542..21675680	In(1)C171
3C7-19E	X:3102328..21086629	In(1)N[8d5]
3C7-14B	X:3102328..16363596	In(1)N[298]
3C7-8E	X:3102328..9600460	In(1)N[P]
3C7-6A	X:3102328..6516900	In(1)N[22j4]
4-17B	X:3955447..18502714	In(1)SMG3
4A-14D	X:3955447..16520529	In(1)Dem1-1
4-9	X:3955447..10976635	In(1)M3
4B-7A	X:4115669..7286017	In(1)IC
4B4-7B3	X:4234786..7557502	In(1)ct[43aH1]
4D-17B	X:4749024..18502714	In(1)St-D
4D-12E	X:4749024..14510750	In(1)Dem1-2
4D-9A	X:4749024..10055610	In(1)U7.4cm1
4D-6F	X:4749024..7150636	In(1)U7.6.1
4D-6F	X:4749024..7150636	In(1)U7.9
4E-20F	X:4964040..23108331	In(1)l-v132
5A-16E	X:5475817..17883261	In(1)IW1
5A-7B3	X:5475817..7557502	In(1)ct[J13]
5A-6F5	X:5475817..7114904	In(1)Sxl[+fPb-11]
5B-19D	X:5697153..20604985	In(1)89e80
5B-11A7	X:5697153..12294293	In(1)V7-12
5C-12C1	X:5766003..13767270	In(1)rdgB5
5C-8F	X:5766003..9709556	In(1)Mg83
5C2-5D5-5D6	X:5766013..5832775	In(1)N73

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
1A-56A	X:103615..19012906	T(1;2)SP18
1A5-66C1	X:349644..8246397	T(1;3)JC56
1B1-98C	X:408583..28383802	T(1;3)y[75r]
1B1-98C	X:408583..28383802	T(1;3)y[67k5]
1B1-60F4	X:408583..25101785	T(1;2)y[A76b37]
1B-38E	X:408583..20812419	T(1;2)OR25
1B1-36D	X:408583..17817472	T(1;2)y[260-13]
1B1-49F	X:408583..13275886	T(1;2)y[R7]
1B1-87A	X:408583..12147054	T(1;3)y[R19]
1B1-28B	X:408583..7644956	T(1;2)y[85f3]
1B1-27C	X:408583..6969877	T(1;2)y[Ee11]
1B-83F	X:408583..6625558	T(1;3)SP21
1B4-71D	X:466699..15528103	T(1;3)sc[260-15]	2 stocks
1B9-88A	X:529780..14226397	T(1;3)GA100
1C-56C	X:660484..19329544	T(1;2)DEB5
1D-46E	X:831097..10111219	T(1;2)OR39
1D4-36C	X:962726..17552485	T(1;2)GF326
1E-99A	X:991048..29468940	T(1;3)GA91	FBst0004636
1E1-71C1	X:991048..15298777	T(1;3)N3
1E4-58E	X:1185508..22584651	T(1;2)RC66
1F-99F	X:1254810..30597427	T(1;3)Dem1-8
2A-60D	X:1368553..24747488	T(1;2)OR6
2B-57D	X:1475669..21378741	T(1;2)Su(bw[D])42
2B5-54A	X:1660982..17227747	T(1;2)C123
2B5-83E	X:1660982..6493156	T(1;3)GE222
2C-97A10	X:1972107..26362804	T(1;3)slu
2D3-52F	X:2127280..16231534	T(1;2)KC16
2D3-49A	X:2127280..12530887	T(1;2)GA113
2F-91A	X:2223442..18446794	T(1;3)29A2
3A-97A	X:2328358..26362804	T(1;3)M155
3A-65A	X:2328358..6351562	T(1;3)OR34	FBst0301029
3A4-42A	X:2490289..6496635	T(1;2)S76
3A5-55A	X:2555321..18013902	T(1;2)N4
3B-39E	X:2666235..21684084	T(1;2)OR28
3C1-98D	X:2804156..28644088	T(1;3)ZWD9
3C-97F	X:2804156..27434247	T(1;3)OR37
3C1-39E2	X:2804156..21592349	T(1;2)w[70k18.1]
3C-57B	X:2804156..21107330	T(1;2)Ee4
3C-38E	X:2804156..20812419	T(1;2)OR84
3C-37C	X:2804156..19217604	T(1;2)OR17
3C-67F	X:2804156..10949869	T(1;3)Dem1-5
3C-28C	X:2804156..7820556	T(1;2)SP64
3C-84A	X:2804156..6896977	T(1;3)z[+]9
3C2-92C2	X:2845023..20037706	T(1;3)w[88c34b]
3C2-91E	X:2845023..19070332	T(1;3)w[78h]
3C2-54E	X:2845023..17811908	T(1;2)w[Ee10]
3C2-70C	X:2845023..14047681	T(1;2)w[Ee11]
3C2-87F	X:2845023..13843302	T(1;3)w[81k11]
3C2-65E5	X:2845023..7156841	T(1;3)w[85e1]
3C2-65B	X:2845023..6608375	T(1;3)w[74c]
3C7-38B	X:3102328..20098210	T(1;2)N[Uc1.26]
3C7-27E	X:3102328..7277616	T(1;2)HF326
3D-67A	X:3312266..9333837	T(1;2)Dem1-6
3F-71E	X:3765078..15674313	T(1;3)OR66
3F-84E	X:3765078..8130321	T(1;3)M159
4B-88A	X:4115669..14226397	T(1;3)OR60	6 stocks
4C-73C	X:4333244..16805146	T(1;3)OR67
4C-42C	X:4333244..6776962	T(1;2)SP84
4C6-71B	X:4517999..15216220	T(1;3)bi[Qd-1E4]
4D-87F	X:4749024..13843302	T(1;3)OR6
5B-35C	X:5697153..15271253	T(1;2)5B;35C
5C;7E;20-5C;7E;20	X:5766003..5955320	Tp(1;1)hi11
5C-5D;10A;13B;14B;22A;73F;77A	X:5766003..5955320	T(1;2;3)JE57
5C;9A;20;49A-5C;9A;20;49A	X:5766003..5955320	T(1;2)C179
5C1-5C2-h1-h17	X:5766003..5766012	T(1;Y)V35
5C-h18-h25B	X:5766003..5766012	T(1;Y)B36