FlyBase Aberration Report: Dmel\Df(1)ED6802

General Information

Symbol

Df(1)ED6802

Species

D. melanogaster

Name

FlyBase ID

FBab0030428

Feature type

chromosomal_deletion

Computed Breakpoints include

[5A12-5A12];[5D1-5D1];

Features within 5A12--5D1

Genomic Maps

JBrowse

Sequence coordinates

X:5,679,980..5,679,980 (Df(1)ED6802:bk1)

(DrosDel Project, 2007.6.25)

X:5,965,880..5,965,880 (Df(1)ED6802:bk2)

(DrosDel Project, 2007.6.25)

Member of large scale dataset(s)

Dfs_DrosDel_set1

A set of isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Initial core set of 209 isogenic deletions provides ~60% euchromatic genome coverage.

(Ryder et al., 2007)

Nature of Aberration

Cytological Order

Progenitor

P{RS3r}CB-5266-3

(Ryder and Roote, 2005.11.4)

P{RS5r}5-SZ-4098

(Ryder and Roote, 2005.11.4)

Mutagen

FLPase

(Ryder and Roote, 2005.11.4)

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Ryder and Roote, 2005.11.4, Ryder, 2003.6.17)

Breakpoints

5A12;5D1

(FlyBase Curators, 2008)

Causes alleles

Carries alleles

Transposon Insertions

P{3'.RS5+3.3'}ED6802

(Ryder and Roote, 2005.11.4)

Formalized genetic data

Genetic mapping information

Comments

Comments on Cytology

Confirmed by 3-step PCR confirmation as shown in http://www.drosdel.org.uk/del_confirm.php

(Ryder and Roote, 2005.11.4)

Limits of break 1 computationally determined from location of progenitor P insertion on genome sequence between P{EP}CG3249^EP1400 and P{EP}Tre1^EP496 Limits of break 2 computationally determined from location of progenitor P insertion on genome sequence between P{EP}Act5C^EP1604&P{EP}EP444 and P{EP}EP1457^EP1457&P{EP}CG5928^EP1083

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

Partially deleted / disrupted

Molecular Data

Completely deleted

Partially deleted