FlyBase Aberration Report: Dmel\Df(1)BSC824

General Information

Symbol

Df(1)BSC824

Species

D. melanogaster

Name

FlyBase ID

FBab0045936

Feature type

chromosomal_deletion

Computed Breakpoints include

Features within 20C1--20F3 (Estimated cytology)

Genomic Maps

JBrowse

Sequence coordinates

X:22,540,084..22,540,084 (Df(1)BSC824:bk1)

(Christensen et al., 2009.6.15)

X:22,979,403..22,979,403 (Df(1)BSC824:bk2)

(Christensen et al., 2009.6.15)

Member of large scale dataset(s)

Dfs_BSC_set2

A set of ~800 largely isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Designed to fill gaps in deletion coverage and breakpoint placement; also used to replace older available deficiencies that have not been molecularly mapped.

(Cook et al., 2012)

Nature of Aberration

Cytological Order

Progenitor

PBac{RB}CG17600^e01638

(Christensen et al., 2009.6.15)

P{XP}d06051

(Christensen et al., 2009.6.15)

Mutagen

FLPase

(Christensen et al., 2009.6.15)

Class of aberration (relative to wild type)

chromosomal_deletion

(Christensen et al., 2009.6.15)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Christensen et al., 2009.6.15)

Breakpoints

Causes alleles

Carries alleles

Transposon Insertions

P+PBac{XP5.RB3}BSC824

(Christensen et al., 2009.6.15)

Formalized genetic data

Genetic mapping information

Comments

Comments on Cytology

The breakpoints of Df(1)BSC824 predicted from the Release 5 genomic coordinates of the progenitor PBac{RB}CG17600^e01638 and P{XP}d06051 transposable element insertion sites are X:21941920 ;22381239 and the cytological breakpoints predicted from these coordinates are 20C1;20F3.

(Christensen et al., 2009.6.15)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

fog

(Christensen et al., 2009.6.15)

Partially deleted / disrupted

Molecular Data

Completely deleted

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (19)

Related Comments

Phenotypic Data

In combination with other aberrations

NOT in combination with other aberrations

Stocks (0)

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

The presence of P+PBac{XP5.RB3}BSC824 was verified using the PCR methods and primers described in FBrf0175003 with the substitution of the primer 5'-GCTTCTAAACGCTTACGCATAAACGATG-3' for the RB3' plus or RB3' minus primer in the Hybrid PCR protocol in FBrf0174229.

(Christensen et al., 2009.6.15)

Synonyms and Secondary IDs (1)

Reported As

Symbol Synonym

Df(1)BSC824

(Li et al., 2020, Sawyer et al., 2020, Cook et al., 2012, Christensen et al., 2009.6.15)

Name Synonyms

Secondary FlyBase IDs

References (5)

Report Sections

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