Nucleotide substitution: A527T. Nucleotide substitution: T1212C. Nucleotide substitution: C1254T. Nucleotide substitution: C1356T. Nucleotide substitution: C1364T. Nucleotide substitution: C1414T. Nucleotide substitution: A1501G. Nucleotide substitution: C1561T. Nucleotide substitution: T1774C. Nucleotide substitution: T1888C. Nucleotide substitution: A1955G. Nucleotide substitution: A1985G. Nucleotide substitution: C2032T. Nucleotide substitution: T2089C. Nucleotide substitution: A2092G. Nucleotide substitution: T2093C. Nucleotide substitution: T2408G. Nucleotide substitution: T2551C. Nucleotide substitution: C2557T. Nucleotide substitution: T2588A. Nucleotide substitution: A2629G. Nucleotide substitution: T2756G. Nucleotide substitution: C2874A. Nucleotide substitution: A2887C. Nucleotide substitution: A2890T. Nucleotide substitution: T2941G. Nucleotide substitution: T2974A. Nucleotide substitution: T3022C. (Substitutions are relative to the "S26-F" strain. Transcription start site corresponds to nucleotide position 1184).

Nucleotide substitution: T29C Nucleotide substitution: C71T. Nucleotide substitution: C173T. Nucleotide substitution: C181T. Nucleotide substitution: C231T. Nucleotide substitution: A318G. Nucleotide substitution: C378T. Nucleotide substitution: T591C. Nucleotide substitution: T705C. Nucleotide substitution: A772G. Nucleotide substitution: A802G. Nucleotide substitution: C849T. Nucleotide substitution: T906C. Nucleotide substitution: A909G. Nucleotide substitution: T910C. Nucleotide substitution: T1225G. Nucleotide substitution: T1368C. Nucleotide substitution: C1374T. Nucleotide substitution: T1405A. Nucleotide substitution: A1446G. Nucleotide substitution: T1573G. Nucleotide substitution: T1691A. Nucleotide substitution: A1704C. Nucleotide substitution: A1707T. Nucleotide substitution: T1758G. Nucleotide substitution: T1791A. Nucleotide substitution: T1839C. Amino acid replacement: N258D. Amino acid replacement: A268T. Nucleotides are numbered from the initiation codon.