FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Human Disease Model Report: combined saposin deficiency
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General Information
Name
combined saposin deficiency
FlyBase ID
FBhh0000680
Disease Ontology Term
Parent Disease
Overview

This report describes combined saposin deficiency, a form of sphingolipidosis; combined saposin deficiency is inherited as an autosomal recessive. The human gene implicated in this disease is prosaposin (PSAP), a precursor of four small nonenzymatic glycoproteins termed 'sphingolipid activator proteins' (SAPs) that assist in the lysosomal hydrolysis of sphingolipids. combined saposin deficiency results in dysfunction of all four of the small SAPs encoded by PSAP. There is a single orthologous gene in Drosophila, Sap-r, for which amorphic and other loss-of-function alleles, RNAi-targeting constructs, and alleles caused by insertional mutagenesis have been generated. Sap-r is also orthologous to two additional human genes, PSAPL1 and SFTPB.

The human PSAP gene has not been introduced into flies.

Animals homozygous for an amorphic mutation of Dmel\Sap-r exhibit phenotypes typical of spingolipidosis, including an enlarged endolysosomal compartment and sphingolipid accumulation in most larval tissues assessed. They also exhibit reduced viability with ~50% survival to adulthood; survival of some animals to adulthood allowed study of their progressive neurodegeneration and analysis of lipid profiles in younger and older flies. A single genetic interaction has been described for Dmel\Sap-r; see Sap-r gene report.

[updated May 2025 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: combined saposin deficiency
OMIM report

[COMBINED SAPOSIN DEFICIENCY; PSAPD](https://omim.org/entry/611721)

Human gene(s) implicated

[PROSAPOSIN; PSAP](https://omim.org/entry/176801)

Symptoms and phenotype

Lysosomal storage diseases (LSDs) are characterized by the accumulation of indigestible material in the lysosome caused by specific defects in the lysosomal degradation machinery. Sphingolipidoses often present as severe, untreatable forms of LSDs with massive sphingolipid and membrane accumulation in lysosomes, neurodegeneration and very short life expectancy (FBrf0235733 and references cited therein).

Prosaposin deficiency, also called combined saposin deficiency, results in death in early infancy. [from MIM:611721; 2017.12.07]

Variants of the PSAP gene that affect only one of the four encoded peptides result in neurologic deterioration of varying severity. [from MIM:611722, MIM:249900, MIM:610539; 2017.12.17]

Genetics

Combined saposin deficiency is caused by homozygous or compound heterozygous mutation in the PSAP gene. [from MIM:611721; 2017.12.06]

Cellular phenotype and pathology
Molecular information

Saposins A-D localize primarily to the lysosomal compartment where they facilitate the catabolism of glycosphingolipids with short oligosaccharide groups. The precursor protein exists both as a secretory protein and as an integral membrane protein and has neurotrophic activities. [NCBI Gene, PSAP; 2017.12.07]

Saposins are low-molecular mass proteins that serve as activators of lysosomal degradation of sphingolipids, a process that involves sequential action of specific hydrolases. [Gene Cards, PSAP: 2017.12.07]

The PSAP gene encodes prosaposin, a precursor of several small nonenzymatic glycoproteins termed 'sphingolipid activator proteins' (SAPs) that assist in the lysosomal hydrolysis of sphingolipids (O'Brien and Kishimoto, 1991; pubmed:2001789). After proteolytic processing of the prosaposin protein, the 4 released polypeptides (designated SAPA through D) are functional activators. [from MIM:176801; 2017.12.07]

External links
Disease synonyms
combined SAP deficiency
combined saposin deficiency
lipid storage disease, PSAP-related
LSD
lysosomal storage disease, PSAP-related
prosaposin deficiency
PSAPD
Search term: lipid storage disease
Search term: lysosomal storage disorder
sphingolipidosis, PSAP-related
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    Symbol / Name
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    Many to one: 3 human to 1 Drosophila; the other human genes are PSAPL1 and SFTPB.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Gene Snapshot
      Saposin-related (Sap-r) encodes the single protein precursor of several sphingolipid activator proteins (Saposins). Loss of Sap-r leads to the accumulation of sphingolipids in lysosomes, resulting in lysosomal dysfunction, defective lipid homeostasis and neurodegeneration. [Date last reviewed: 2018-09-06]
      Molecular function (GO)
        Gene Groups / Pathways
          Comments on ortholog(s)

          High-scoring ortholog of human PSAP; moderate-scoring ortholog of PSAPL1 and SFTPB (1 Drosophila to 3 human); Dmel\Sap-r shares 23% identity and 40% similarity with human PSAP.

          Orthologs and Alignments from DRSC
          DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
          Other Genes Used: Viral, Bacterial, Synthetic (0)
            Summary of Physical Interactions (0 groups)
            Alleles Reported to Model Human Disease (Disease Ontology) (3 alleles)
            Models Based on Experimental Evidence ( 3 )
            Modifiers Based on Experimental Evidence ( 1 )
            Allele
            Disease
            Interaction
            References
            Alleles Representing Disease-Implicated Variants
            Genetic Tools, Stocks and Reagents
            Sources of Stocks
            Contact lab of origin for a reagent not available from a public stock center.
            Bloomington Stock Center Disease Page
            Related mammalian, viral, bacterial, or synthetic transgenes
            Allele
            Transgene
            Publicly Available Stocks
            Selected Drosophila transgenes
            Allele
            Transgene
            Publicly Available Stocks
            RNAi constructs available
            Allele
            Transgene
            Publicly Available Stocks
            Selected Drosophila classical alleles
            Allele
            Allele class
            Mutagen
            Publicly Available Stocks
            amorphic allele - molecular evidence
            P-element activity
            amorphic allele - molecular evidence
            FLPase
            References (7)