FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Human Disease Model Report: Coffin-Siris syndrome 12
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General Information
Name
Coffin-Siris syndrome 12
FlyBase ID
FBhh0001442
Overview

This report describes Coffin-Siris syndrome 12 (CSS12), a syndromic neurodevelopmental disorder caused by mutations in the human gene BICRA. CSS12 shows autosomal dominant inheritance. BICRA encodes a member of the SWI/SNF family of chromatin remodeling complexes; multiple genes within the SWI/SNF family have been implicated in the different subtypes of Coffin-Siris syndrome. The ortholgous gene in Drosophila, Dmel\Bicra, encodes a component of the non-canonical BAP complex (FBgg0001645). RNAi-targeting constructs and alleles caused by insertional mutagenesis have been generated for Bicra. Dmel\Bicra is also related to the human gene BICRAL.

A UAS construct of the human wild-type Hsap\BICRA gene has been introduced into flies and is available.

Work in flies has addressed the intellectual disability phenotype associated with CSS12 (and other subtypes of Coffin-Siris syndrome). RNAi-mediated knockdown of Bicra in the mushroom body (a brain region associated with learning and memory) causes male flies not to reduce courtship attempts after being rejected by a female, a measure of memory formation in flies. Knockdown Bicra in neurons, but not in glia, impairs courtship learning.

[updated Mar. 2022 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: intellectual disability, autosomal dominant
Symptoms and phenotype

Intellectual disability is characterized by impairments in intellectual functioning and adaptive behavior; symptoms must be present before a child becomes 18 years old (http://medical-dictionary.thefreedictionary.com/mental+retardation; 2016.01.19).

Intellectual disability can be subdivided into syndromic forms, characterized by cognitive impairment accompanied by dysmorphic features, malformations or neurological abnormalities, and nonsyndromic forms, characterized by cognitive impairment without additional features (Basel-Vanagaite, 2008; DOI: 10.1002/9780470015902.a0021454).

Parent Disease Summary: Coffin-Siris syndrome
Symptoms and phenotype

Coffin-Siris syndrome is a multiple malformation syndrome characterized by mental retardation associated with coarse facial features, hypertrichosis, sparse scalp hair, and hypoplastic or absent fifth fingernails or toenails. Other more variable features may include poor overall growth, craniofacial abnormalities, spinal anomalies, and congenital heart defects (review by Vergano and Deardorff, 2014; pubmed:25169447). [from MIM:135900; 2019.07.19]

Coffin-Siris syndrome is a multiple malformation syndrome characterized by intellectual disability associated with coarse facial features, hypertrichosis, sparse scalp hair, and hypoplastic or absent fifth fingernails or toenails. Other more variable features may include poor overall growth, craniofacial abnormalities, spinal anomalies, and congenital heart defects (review by Vergano and Deardorff, 2014; pubmed:25169447). [from MIM:135900; 2019.07.19]

Specific Disease Summary: Coffin-Siris syndrome 12
OMIM report

[COFFIN-SIRIS SYNDROME 12; CSS12](https://omim.org/entry/619325)

Human gene(s) implicated

[BRD4-INTERACTING CHROMATIN REMODELING COMPLEX-ASSOCIATED PROTEIN; BICRA](https://omim.org/entry/605690)

Symptoms and phenotype

Coffin-Siris syndrome-12 (CSS12) is a neurodevelopmental disorder characterized by global developmental delay with variably impaired intellectual development, speech and language delay, and behavioral abnormalities, such as autism or hyperactivity. Affected individuals may have hypotonia and poor feeding in infancy. There are variable dysmorphic facial features, although most patients do not have the classic hypoplastic fifth digit/nail abnormalities that are often observed in other forms of CSS (Barish et al., 2020; pubmed:33232675). [from MIM:619325; 2022.03.20]

Genetics

Coffin-Siris syndrome-12 (CSS12) is caused by heterozygous mutation in the BICRA gene. [from MIM:619325; 2022.03.20]

Cellular phenotype and pathology
Molecular information

BICRA encodes a component of SWI/SNF chromatin remodeling subcomplex GBAF that carries out key enzymatic activities, changing chromatin structure by altering DNA-histone contacts within a nucleosome in an ATP-dependent manner. [Gene Cards, BICRA; 2022.03.20]

External links
Disease synonyms
CSS12
SSRIDD
SWI/SNF-related intellectual disability disorder
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

Many to one: 2 human genes to 1 Drosophila gene.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Snapshot
    BRD4 interacting chromatin remodeling complex associated protein (Bicra) promotes Wingless signaling in the larval wing disc. [Date last reviewed: 2025-11-06]
    Molecular function (GO)
      Cellular component (GO)
      Gene Groups / Pathways
      Comments on ortholog(s)

      Low-scoring ortholog of human BICRA and BICRAL (1 Drosophila to 2 human).

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (5 groups)
        protein-protein
        Interacting group
        Assay
        References
        anti tag coimmunoprecipitation, Identification by mass spectrometry
        anti tag coimmunoprecipitation, Identification by mass spectrometry
        anti tag coimmunoprecipitation, Identification by mass spectrometry
        anti tag coimmunoprecipitation, Identification by mass spectrometry, anti bait coimmunoprecipitation
        anti tag coimmunoprecipitation, Identification by mass spectrometry
        Alleles Reported to Model Human Disease (Disease Ontology) (3 alleles)
        Models Based on Experimental Evidence ( 3 )
        Modifiers Based on Experimental Evidence ( 0 )
        Allele
        Disease
        Interaction
        References
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        References (5)