FB2026_03 , released September 17, 2026
Human Disease Model Report: neurodevelopmental disorder with hypotonia, speech delay, and dysmorphic facies
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General Information
Name
neurodevelopmental disorder with hypotonia, speech delay, and dysmorphic facies
FlyBase ID
FBhh0001525
Overview

This report describes neurodevelopmental disorder with hypotonia, speech delay, and dysmorphic facies (NEDHSF), originally described as a syndromic form of intellectual disability; NEDHSF exhibits autosomal dominant inheritance. The human gene implicated in this disease is CERT1; CERT1 encodes a ceramide transporter that regulates intracellular trafficking of ceramides, which subsequently impacts levels of sphingolipid biosynthesis. There is a single orthologous gene in Drosophila, cert, for which multiple genetic reagents have been generated, including loss-of-function mutations, RNAi-targeting constructs, alleles caused by insertional mutagenesis, and overexpression constructs.

The human CERT1 has not been introduced into flies.

Experiments in Drosophila have been used to test the hypothesis that the phenotypes associated with this disease are due to CERT1 gain of function, caused by disruption of CERT1 autoregulation. Two genotypes have been used: one with multiple extra copies of wild-type Dmel\cert and one using a mutation in the fly gene analogous to a common and severe disease-implicated variant. (See the 'Disease-Implicated Variants' table below.) Both genotypes result in head and brain size defects and impaired locomotor activity; these phenotypes were ameliorated by pharmacological inhibition of CERT.

[updated Mar. 2025 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: intellectual disability, autosomal dominant
Symptoms and phenotype

Intellectual disability is characterized by impairments in intellectual functioning and adaptive behavior; symptoms must be present before a child becomes 18 years old (http://medical-dictionary.thefreedictionary.com/mental+retardation; 2016.01.19).

Intellectual disability can be subdivided into syndromic forms, characterized by cognitive impairment accompanied by dysmorphic features, malformations or neurological abnormalities, and nonsyndromic forms, characterized by cognitive impairment without additional features (Basel-Vanagaite, 2008; DOI: 10.1002/9780470015902.a0021454).

Specific Disease Summary: neurodevelopmental disorder with hypotonia, speech delay, and dysmorphic facies
OMIM report

[NEURODEVELOPMENTAL DISORDER WITH HYPOTONIA, SPEECH DELAY, AND DYSMORPHIC FACIES; NEDHSF](https://omim.org/entry/616351)

Human gene(s) implicated

[CERAMIDE TRANSPORTER 1; CERT1](https://omim.org/entry/604677)

Symptoms and phenotype

Patients have a syndromic presentation characterized by infantile hypotonia, mild dysmorphologies, variable degrees of intellectual disability and motor and speech delays, increased pain tolerance, and seizures (Gehin, et al., pubmed:36976648; FBrf0256486).

Genetics

Autosomal dominant intellectual developmental disorder 34 (MRD34) is caused by heterozygous mutation in the CERT1 (COL4A3BP) gene. [from MIM:616351; 2023.07.17]

Cellular phenotype and pathology
Molecular information

CERT1 encodes a protein that mediates the intracellular trafficking of ceramides and diacylglycerol lipids in a non-vesicular manner. [GeneCards, CERT1; 2023.07.17]

A key checkpoint in sphingolipid biosynthesis occurs at contact sites between the endoplasmic reticulum and the trans Golgi membrane, where the ceramide transporter (CERT) transfers ceramide (Cer) from the ER to the trans Golgi for its conversion to sphingomyelin; when sufficient rates of SM production are reached, CERT is phosphorylated and undergoes a conformational change that renders it inactive (Gehin, et al., pubmed:36976648; FBrf0256486; and references cited therein)

External links
Disease synonyms
ceramide transporter syndrome
CerTra syndrome
intellectual developmental disorder, autosomal dominant 34
intellectual disability, autosomal dominant 34
MRD34
NEDHSF
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    One to one: 1 human gene to 1 Drosophila gene.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Gene Snapshot
      ceramide transfer protein (cert) encodes a protein that transfers ceramide from the endoplasmic reticulum to the Golgi apparatus where ceramide is used for the biosynthesis of ceramide-derived sphingolipids. [Date last reviewed: 2018-09-27]
      Cellular component (GO)
      Gene Groups / Pathways
        Comments on ortholog(s)

        High-scoring ortholog of human CERT1 (1 Drosophila to 1 human).

        Orthologs and Alignments from DRSC
        DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
        Other Genes Used: Viral, Bacterial, Synthetic (0)
          Summary of Physical Interactions (14 groups)
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          References
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          Alleles Reported to Model Human Disease (Disease Ontology) (1 alleles)
          Models Based on Experimental Evidence ( 1 )
          Modifiers Based on Experimental Evidence ( 0 )
          Allele
          Disease
          Interaction
          References
          Alleles Representing Disease-Implicated Variants
          Genetic Tools, Stocks and Reagents
          Sources of Stocks
          Contact lab of origin for a reagent not available from a public stock center.
          Bloomington Stock Center Disease Page
          Related mammalian, viral, bacterial, or synthetic transgenes
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          Transgene
          Publicly Available Stocks
          Selected Drosophila transgenes
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          RNAi constructs available
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          Publicly Available Stocks
          Selected Drosophila classical alleles
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          Mutagen
          Publicly Available Stocks
          amorphic allele - molecular evidence
          CRISPR/Cas9
          References (5)