FB2026_02 , released June 18, 2026
Assay: RNA-Seq_mE4259_L3_digestive_system
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General Information
Name
RNA-Seq_mE4259_L3_digestive_system
Species
D. melanogaster
Assay type
FlyBase ID
FBlc0001378
Project
Data Provider
Title
RNA-Seq of D. melanogaster, Oregon-R-modENCODE strain, third instar larva, digestive system.
Biosample Source
Overview
Sex
Other tissues studied
Cell component
Cell line
Key genes
Methods
Sample preparation

Climbing third instar larvae were dissected in saline by tearing them immediately posterior to the mouth hooks using paired forceps and everting them. Males and females (as identified by the clear gonadal tissue embedded in fat body of the A5 segment) were dissected separately, and preparations were combined in equal numbers for RNA processing. The digestive system was pulled away from the body immediately anterior to the proventriculus.

Biosamples used (1)
Biosample
Type
Title
D. melanogaster, Oregon-R-modENCODE strain, third instar larva, digestive system, source for RNA.
Assay Details
Key genes
Protocol

Total RNA was isolated using Trizol, then Qiagen RNeasy spin columns. mRNA was isolated using Dynal oligo(dT) beads, then fragmented using divalent cations under elevated temperature, followed by sequential ligation of RNA linkers to the 5’ and 3’ ends. Next, reverse transcription was performed using a primer complementary to the 3’ linker and PCR was performed using primers complementary to both linkers. ~ 300 bp fragments were isolated from an agarose gel and gel-purified again.

Mode of Assay

Read length (bases):76

The samples were quantitated using a Nanodrop, and loaded onto a flow cell for cluster generation and sequenced on an Illumina Genome Analyzer II using either single read or paired end protocols (Illumina).

Comments
Associated Data
Size
Files
Additional Information
Synonyms and Secondary IDs (3)
Reported As
Symbol Synonym
RNA-Seq_mE4259_L3_digestive_system
modENCODE_4259
Name Synonyms
RNA-Seq of D. melanogaster, Oregon-R-modENCODE strain, third instar larva, digestive system.
Secondary FlyBase IDs
    References (2)