Assay: ChIP-Seq_mE855_nej

General Information

Name

ChIP-Seq_mE855_nej_E9-12

Species

D. melanogaster

Assay type

ChIP-Seq

FlyBase ID

FBlc0003180

Project

modENCODE_regulation_chromatin

Data Provider

Title

ChIP-Seq of nej in D. melanogaster, iso-1 strain, embryo (4-8 hr AEL).

Accessions

Biosample Source

Overview

Strain

iso-1

(Negre et al., 2011)

Stage

early extended germ band stage

(Negre et al., 2011)

late extended germ band stage

(Negre et al., 2011)

Sex

Tissue isolated

organism

(Negre et al., 2011)

Other tissues studied

Cell component

Cell line

Key genes

Methods

Sample preparation

Biosamples used (1)

Biosample

Type

Title

BS_mE855

whole organism

D. melanogaster, iso-1 strain, embryo (4-8 hr AEL), source for ChIP.

Assay Details

Methods

Illumina sequencing

(Negre et al., 2011)

single-end layout

(Negre et al., 2011)

Key genes

(bait_protein)

Protocol

Mode of Assay

Comments

Associated Data

Size

Files

Additional Information

Related Datasets

Parent projects (1)

Project

Type

Title

modENCODE_regulation_chromatin

genome binding

Genome-wide localization of chromatin factors by ChIP-chip and ChIP-Seq.

Processed data generated from this assay (1)

Result

Type

Title

mE1_CBP_Enhancers

binding site identification

Putative embryonic-specific enhancers identified by ChIP-chip and ChIP-Seq of nej (CBP) in embryos, larvae, pupae and adults.

Synonyms and Secondary IDs (3)

Reported As

Symbol Synonym

ChIP-Seq_mE855_nej_E9-12

modENCODE_855

Name Synonyms

ChIP-Seq of nej in D. melanogaster, iso-1 strain, embryo (4-8 hr AEL).

(Negre et al., 2011)

Secondary FlyBase IDs

References (3)

Report Sections

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