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FB2026_01
,
released March 12, 2026
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FB2026_01
,
released March 12, 2026
Project: modENCODE_regulation_chromatin
J2G
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General Information
Name
modENCODE_regulation_chromatin
Species
D. melanogaster
Project type
genome binding
FlyBase ID
FBlc0003375
Parent Project
modENCODE_regulation
Data Provider
Title
Genome-wide localization of chromatin factors by ChIP-chip and ChIP-Seq.
Accessions
Overview
Description
Project attributes
Biosample type
whole organism
(
Negre et al., 2011
)
Assay type
ChIP-Seq
(
Negre et al., 2011
)
ChIP-chip
(
Negre et al., 2011
)
Reagent type
Result type
binding site identification
(
Nègre et al., 2011
)
Key genes
HDAC6
HDAC4
nej
HDAC3
HDAC1
HDAC11
His3
(bait_protein)
Export to HitList
GO term(s)
regulation of DNA-templated transcription elongation
(
Nègre et al., 2011
)
SO term(s)
region
Details
Sample preparation
Protocol
Mode of Assay
Data analysis
Comments
Files
Additional Information
Related Datasets
Parent projects (1)
Export to HitList
Project
Type
Title
modENCODE_regulation
umbrella project
Umbrella project for modENCODE studies of transcriptional regulatory elements by the White group.
Biosamples generated (44)
Export to HitList
Biosample
Type
Title
BS_mE2627
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
BS_mE2628
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
BS_mE2629
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
BS_mE2630
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
BS_mE2631
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
BS_mE643
whole organism
D. melanogaster, iso-1 strain, embryo (20-24 hr AEL), source for ChIP.
BS_mE862
whole organism
D. melanogaster, iso-1 strain, adult female, source for ChIP.
BS_mE863
whole organism
D. melanogaster, iso-1 strain, adult male, source for ChIP.
BS_mE881
whole organism
D. melanogaster, iso-1 strain, adult female, source for ChIP.
BS_mE882
whole organism
D. melanogaster, iso-1 strain, adult male, source for ChIP.
Showing 10 / 44 records. Use
Export to HitList
above to see all
Biosamples reanalyzed (2)
Export to HitList
Result
Type
Title
BS_mE622
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
BS_mE919
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
Raw data generated (44)
Export to HitList
Assay
Type
Title
ChIP-chip_mE643_nej_E17
ChIP-chip
ChIP-chip of nej in D. melanogaster, iso-1 strain, embryo (20-24 hr AEL).
ChIP-chip_mE881_nej_AF
ChIP-chip
ChIP-chip of nej in D. melanogaster, iso-1 strain, adult female.
ChIP-chip_mE882_nej_AM
ChIP-chip
ChIP-chip of nej in D. melanogaster, iso-1 strain, adult male.
ChIP-Seq_mE2627_HDAC4_E1-15
ChIP-Seq
ChIP-Seq of HDAC4 in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
ChIP-Seq_mE2628_HDAC4_E1-15
ChIP-Seq
ChIP-Seq of HDAC4 in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
ChIP-Seq_mE2629_HDAC11_E1-15
ChIP-Seq
ChIP-Seq of HDAC11 in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
ChIP-Seq_mE2630_HDAC11_E1-15
ChIP-Seq
ChIP-Seq of HDAC11 in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
ChIP-Seq_mE2631_HDAC6_E1-15
ChIP-Seq
ChIP-Seq of HDAC6 in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
ChIP-Seq_mE862_nej_AF
ChIP-Seq
ChIP-Seq of nej in D. melanogaster, iso-1 strain, adult female.
ChIP-Seq_mE863_nej_AM
ChIP-Seq
ChIP-Seq of nej in D. melanogaster, iso-1 strain, adult male.
Showing 10 / 44 records. Use
Export to HitList
above to see all
Raw data reanalyzed (2)
Export to HitList
Assay
Type
Title
ChIP-chip_mE622_H3K4me3_E1-15
ChIP-chip
ChIP-chip of H3K4me3 in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
ChIP-chip_mE919_H3K27me3_E1-15
ChIP-chip
ChIP-chip of H3K27me3 in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
Processed data (2)
Export to HitList
Result
Type
Title
mE1_CBP_Enhancers
binding site identification
Putative embryonic-specific enhancers identified by ChIP-chip and ChIP-Seq of nej (CBP) in embryos, larvae, pupae and adults.
mE1_HDAC_PRE
binding site identification
Putative polycomb response elements identified by ChIP-chip of HDAC and histone modifications in embryos.
Synonyms and Secondary IDs (2)
Reported As
Symbol Synonym
modENCODE_regulation_chromatin
Name Synonyms
Genome-wide localization of chromatin factors by ChIP-chip and ChIP-Seq.
(
Nègre et al., 2011
)
Secondary FlyBase IDs
References (3)
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General Information
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Details
Related Datasets
Synonyms and Secondary IDs
References