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FB2026_02
,
released June 18, 2026
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FB2026_02
,
released June 18, 2026
Project: modENCODE_copy_number_variation
J2G
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General Information
Name
modENCODE_copy_number_variation
Species
D. melanogaster
Project type
genome variation
FlyBase ID
FBlc0003363
Parent Project
modENCODE_replication
Data Provider
Title
Characterization of copy number variation in larval and adult polyploid tissues.
Accessions
Overview
Description
Project attributes
Biosample type
tissue
(
modENCODE Data Coordination Center et al., 2012
,
Kim et al., 2011
,
Nordman et al., 2011
)
immortalized cell line
(
modENCODE Data Coordination Center et al., 2012
)
Assay type
comparative genomic hybridization by array
(
modENCODE Data Coordination Center et al., 2012
,
Kim et al., 2011
,
Nordman et al., 2011
)
Reagent type
Result type
Key genes
GO term(s)
DNA replication
(
Nordman et al., 2011
)
SO term(s)
Details
Sample preparation
Protocol
Mode of Assay
Data analysis
Comments
Files
Additional Information
Related Datasets
Parent projects (1)
Export to HitList
Project
Type
Title
modENCODE_replication
umbrella project
Umbrella project for modENCODE studies of genome replication.
Biosamples generated (17)
Export to HitList
Biosample
Type
Title
BS_mE-Rep_A_follicle_cells_Oregon-R-modENCODE_CGH
tissue
D. melanogaster, adult female follicle cell, Oregon-R-modENCODE strain, source for CGH.
BS_mE-Rep_A_follicle_cells_Oregon-R-Orr-Weaver_CGH
tissue
D. melanogaster, adult female follicle cell, Oregon-R-Orr-Weaver strain, source for CGH.
BS_mE-Rep_CME-W1-Cl.8+_CNV1
immortalized cell line
D. melanogaster, CME-W1-Cl.8+ cell line, source for CNV-Seq.
BS_mE-Rep_CME-W1-Cl.8+_CNV2
immortalized cell line
D. melanogaster, CME-W1-Cl.8+ cell line, source for CNV-Seq, paired-end.
BS_mE-Rep_Kc167_CNV1
immortalized cell line
D. melanogaster, Kc167, cell line, source for CNV-Seq.
BS_mE-Rep_Kc167_CNV2
immortalized cell line
D. melanogaster, Kc167, cell line, source for CNV-Seq, paired-end.
BS_mE-Rep_L3_fat_CGH
tissue
D. melanogaster, third instar larval fat body, source for CGH.
BS_mE-Rep_L3_midgut_CGH
tissue
D. melanogaster, third instar larval midgut, source for CGH.
BS_mE-Rep_ML-DmBG3-c2_CNV1
immortalized cell line
D. melanogaster, ML-DmBG3-c2, cell line, source for CNV-Seq.
BS_mE-Rep_S2-DRSC_CGH
immortalized cell line
D. melanogaster, S2-DRSC cell line, source for CGH.
Showing 10 / 17 records. Use
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above to see all
Raw data generated (17)
Export to HitList
Assay
Type
Title
CGH_mE2384_A_follicle_cells
comparative genomic hybridization by array
Comparative genomic hybridization of D. melanogaster, Oregon-R-modENCODE strain, adult female follicle cell.
CGH_mE2385_A_follicle_cells
comparative genomic hybridization by array
Comparative genomic hybridization of D. melanogaster, Oregon-R-Orr-Weaver strain, adult female follicle cell.
CGH_mE2544_A_salivary_gland
comparative genomic hybridization by array
Comparative genomic hybridization of D. melanogaster, iso-1 strain, adult salivary gland.
CGH_mE2545_A_salivary_gland
comparative genomic hybridization by array
Comparative genomic hybridization of D. melanogaster, Oregon-R-Orr-Weaver strain, adult salivary gland.
CGH_mE4717_L3_fatbody
comparative genomic hybridization by array
Comparative genomic hybridization of D. melanogaster, third instar larval fat body.
CGH_mE4718_L3_midgut
comparative genomic hybridization by array
Comparative genomic hybridization of D. melanogaster, third instar larval midgut.
CGH_mE5520_A_midgut
comparative genomic hybridization by array
Comparative genomic hybridization of D. melanogaster, Oregon-R-Orr-Weaver strain, adult midgut.
CGH_mE5521_A_malpighian_tubule
comparative genomic hybridization by array
Comparative genomic hybridization of D. melanogaster, Oregon-R-Orr-Weaver strain, adult Malpighian tubule.
CGH_mE5522_A_fat_body
comparative genomic hybridization by array
Comparative genomic hybridization of D. melanogaster, Oregon-R-Orr-Weaver strain, adult fat body.
CGH_mE725_S2-DRSC
comparative genomic hybridization by array
Comparative genomic hybridization of D. melanogaster, S2-DRSC cell line.
Showing 10 / 17 records. Use
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Synonyms and Secondary IDs (2)
Reported As
Symbol Synonym
modENCODE_copy_number_variation
Name Synonyms
Characterization of copy number variation in larval and adult polyploid tissues.
(
Nordman et al., 2011
)
Secondary FlyBase IDs
References (4)
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Related Datasets
Synonyms and Secondary IDs
References