FB2026_03 , released September 17, 2026
Result: scRNAseq_2021_Tauc_MID_seq_clustering
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General Information
Name
scRNAseq_2021_Tauc_MID_seq_clustering
Species
D. melanogaster
Result type
FlyBase ID
FBlc0005645
Project
Data Provider
Title
Clustering analysis of dissociated cells from 30-days old midgut
Status
Current
Accessions
    Biosample Source
    Overview
    Strain
    Sex
    Other tissues studied
    Cell component
    Cell line
    Key genes
    Sample preparation
    Biosamples analyzed by this result (1)
    Biosample
    Type
    Title
    Dissociated cells from 30-days old midgut
    Data Analyzed
    Key genes
    Protocol
    Mode of Assay
    Raw Data Analyzed (1)
    Assay / Reagent collection
    Type
    Title
    Single-cell RNA-seq of dissociated cells from 30-days old midgut
    Processed Data Analyzed (0)
    Result
    Type
    Title
    Analysis
    Reference Genome
    Reference Annotation

    Dmel R6.32

    Data analysis

    Reads were processed using Cell Ranger v3.0.2 (10x Genomics). They were mapped to the Drosophila melanogaster reference genome BDGP6. For quality filtering, cellls with total UMI below 200 or above 2,000, cells with less than 500 genes expressed, and cells with more than 8% of mitochondrial genes detected, were excluded. Clustering analysis and automatic cell annotation were performed with the Monocle 3 v0.2.1 and Garnett v0.1.17 R packages, respectively.

    Comments
    Associated Data
    Size
    3953 cells
    Files
    Additional Information
    Synonyms and Secondary IDs (2)
    Reported As
    Symbol Synonym
    scRNAseq_2021_Tauc_MID_seq_clustering
    Name Synonyms
    Clustering analysis of dissociated cells from 30-days old midgut
    Secondary FlyBase IDs
      References (1)