A characterization of the diverse populations of cells in the optic lobe of the Drosophila pupa.
Reads were processed using Cell Ranger v3.1.0 with default parameters. They were aligned to the Drosophila melanogaster reference genome BDGP 6.29. For quality filtering, cells with less than 2,000 transcripts or more than 20,000 transcripts, cells with more than 10% of mitochondrial transcripts, and cells with more than 3 transcripts aligned to male-specific genes, were excluded.
The EMBL-EBI's Single Cell Expression Atlas provides cell-level annotations, clustering data, raw and normalised read counts, and putative marker genes.
