FB2026_02 , released June 18, 2026
FB2026_02 , released June 18, 2026
Result: scRNAseq_2022_Konstantinides_L3_seq_clustering
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General Information
Name
scRNAseq_2022_Konstantinides_L3_seq_clustering
Species
D. melanogaster
Result type
FlyBase ID
FBlc0006407
Project
Data Provider
Title
Clustering analysis of dissociated cells from larval optic lobe
Status
Current
Accessions
    Biosample Source
    Overview
    Sex
    Other tissues studied
    Cell component
    Cell line
    Key genes
    Sample preparation

    Optic lobes from 40 wandering third instar larvae were dissected and cells were dissociated both mechanically and enzymatically.

    Biosamples analyzed by this result (1)
    Biosample
    Type
    Title
    Dissociated cells from larval optic lobe
    Data Analyzed
    Key genes
    Protocol
    Mode of Assay
    Raw Data Analyzed (1)
    Assay / Reagent collection
    Type
    Title
    Single-cell RNA-seq of dissociated cells from larval optic lobe
    Processed Data Analyzed (0)
    Result
    Type
    Title
    Analysis
    Reference Genome
    Reference Annotation
    Data analysis

    Reads were processed using CellRanger (10x Genomics) v3.0.1. They were mapped to the Drosophila melanogaster reference genome BDGP 6.88. For quality filtering, only genes that were expressed in at least 3 cells across all cells were retained, and only cells with at least 200 genes. Dimensionality reduction and clustering were performed with Seurat v3 by computing 150 principal components and with a resolution of 2.

    Comments
    Associated Data
    Size
    Files
    Additional Information
    Synonyms and Secondary IDs (2)
    Reported As
    Symbol Synonym
    scRNAseq_2022_Konstantinides_L3_seq_clustering
    Name Synonyms
    Clustering analysis of dissociated cells from larval optic lobe
    Secondary FlyBase IDs
      References (1)