Michael,
I've made up a dummy genbank file for the F element (attached as a text
file). I chose this one from the 4 that were 'complete' as it had the most
obvious flanking duplication. If you need any more information, let me know.
Kevin LOCUS FELEMENT 4708 bp DNA INV 01-MAY-2000
DEFINITION Complete F transposable element deduced from Drosophila
melanogaster genomic DNA sequence. Includes gag-related and reverse
transcriptase genes.
ACCESSION FELEMENT
KEYWORDS .
SOURCE fruit fly.
ORGANISM Drosophila melanogaster
Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta;
Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
Drosophilidae; Drosophila.
REFERENCE 1 (bases 1 to 4708)
AUTHORS O'Hare,K.
TITLE F element from Drosophila melanogaster
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4708)
AUTHORS O'Hare,K.
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2000) Department of Biochemistry, Imperial
College of Science, Technology & Medicine, London SW7 2AZ, UK
FEATURES Location/Qualifiers
source 1..4708
/organism='Drosophila melanogaster'
/note='This sequence is from AC005198. Other complete
elements exist in AC006414, AC006302, and AC007888. This
extends at the 5' end the sequence of the FW element in
M17214'
CDS 192..1880
/note='From translation of DNA sequence'
/codon_start=1
/product='gag-related'
/translation='MSQNDTRAQRQREHDERRLSIQRNNAYFSYVSPTIPNADIERSI
THSPGNLLLPTNQERARSCSPALLAPTEAPLPPTTTAGEGPAARSASSSAAPAHGLTK
SAKAKPLAINGTAALPAKQNENVNKKAGSTWQTGMDRYITIKRKLSPENSDLGNKPKN
TRDNSTLIKNVAPANTNRFALLVDTAEDVPLGSVDIEPKKTKPPPIYIREKSTSRLVN
TLIGLIGKDSFHIIPLVRGTINEIKLQTKTEDDYRKVTNYFTAQKIGFYTYQLKSSKG
LQVVLKGIESDVTPEEITEALKEKGFYAKNVFNIKNRNRQPQPLFKIELEPENKPPRK
NEVHPIYKLQLLLHRRITVEEPHKRNAPVQCTNCQEYGHTRSYCTLRPVCVVCGDLHD
SKQCQINKENACEKKCNNCGGNHTANYRGCPIYKELKIRLHKRMNTARAHQGSATLIP
SETNPEVIFSKAASFAPWPTFNTNKTTFANVLKSGMTPPTQNSRTPHEVHTKLDTQQN
YHPAAQQETKTEAMMQALQQSMMEFMTFMKTTIQDMMRNQNLLIQMLVAQQSNK'
CDS 1880..4561
/note='From translation of DNA sequence'
/codon_start=1
/product='reverse transcriptase'
/translation='MATLRIATWNANGVSQRKLELAQFLHEKHIDVMLLSETHLTSKY
NFQIRDYHFYGTNHPDGKAHGGTAILIRNRMKHHFYKEFAENHLQATSINIQLDDNTL
LTLAAVYCPPRFTVLEAQFLDFFQALGPHFIAAGDYNAKHTHWGSRLVNPKGKQLYKT
IIKATNKLDHVSPGSPTYWPSDLNKLPDLIDFAVTKNISRSLVKAECLPDLSSDHSPV
LIHLRRYAENVKPPTRLTSSKTNWLRYKKYISSHIELSPKLNTESDIESCTCALQSIL
TAAALTATPKITNNTINSKKTNVQIEQLVHVKRRLRREWQSSRSPTAKQKLKVATRKL
ANALKQEEDDDQRRYIEQLTPTGTKQKSLWRAHSTLRPPTETVLPIRNSSGGWARSDE
DRANTFAAHLQNVFTPNQATSTFALPSYPVNRHQQHTPIVFRPKEITKIIKDNLSPKK
SPGYDLITPEMIIQLPHSAVRYITKLFNAITKLGYFPQRWKMMKIIMIPKPGKNHTVA
SSYRPISLLSCISKLFEKCLLIRLNQHLIYHNIIPAHQFGFRESHGTIEQVNRITTEI
RTAFEYREYCTAVFLDVSQAFDKVWLDGLMFKIKTSLPESTHKLLKSYLYDRKFAVRC
NTATSTVHTIEAGVPQGSVLGPTLYLIYTADIPTNSRLTVSTFADDTAILSRSRSPIQ
ATAQLALYLIDIEKWLSDWRIKVNEQKCKHVTFTLNRQDCPPLLLNSIPLPKADEVTY
LGVHLDRRLTWRRHIEAKKTQLKLKANNLHWLINSGSPLSLDHKVLLYNSILKPIWTY
GSQLWGNASNSNIDIIQRAQSKILRTITGAPWYVRSENIQRDLNIPSVTNAITELKEK
YHSKLHTHPNHLARGLIQLSSRSRLRRKDLPTQRINY'
BASE COUNT 1618 a 1242 c 857 g 991 t
ORIGIN
1 aatcaattaa tcaattcgat cgccgacgtg tgaagacgtt tttatcgtgc tccgcacaaa
61 atcggttgtt ttgagtgaag tgaacgccaa ataaaataaa ctaaataaaa aatctgaaag
121 cgaaagagac gctctatgcg atgcaagatc gcttaaatac atagtgaatt gttatcttaa
181 ataataaaac tatgagtcag aatgacactc gcgcccagcg tcagcgcgag catgacgaac
241 gccgactctc aattcagcgc aacaacgcgt acttctccta cgtctcaccg acaatcccaa
301 acgcagacat cgagcggtca ataacccata gcccaggaaa ccttcttcta ccaacaaatc
361 aagaaagagc gcgctcctgc tctcccgctc tattggctcc gacagaagcc ccgctacctc
421 caacaacaac agctggagag ggaccggcag cccgctctgc ctcgtcatcg gctgcacccg
481 ctcacggtct gactaagtca gcgaaagcaa aaccgctagc aataaacggt actgctgcac
541 tgccagcaaa acaaaacgaa aacgtaaaca aaaaagctgg gtcgacctgg cagactggaa
601 tggaccgcta cattacaata aagcgaaagc tcagcccgga aaattcagat ttgggaaaca
661 agccgaaaaa tacacgcgat aactctacct tgatcaaaaa tgtagcccct gcaaatacca
721 acagatttgc cttgctggta gataccgctg aggacgtgcc gctgggatcc gttgatatcg
781 aaccgaagaa aacaaagcct ccgccaatat acatccgcga gaagagcaca agccgtcttg
841 taaatacttt gattggcctt attgggaaag atagctttca tataattccc ctcgtaagag
901 gtactatcaa cgaaatcaaa cttcagacga aaacggagga cgactacaga aaagtcacaa
961 actattttac cgcacaaaaa ataggcttct acacctacca gcttaaaagc agcaagggcc
1021 tgcaagtagt cctgaagggc attgagtctg atgttacgcc cgaagagata actgaggcgc
1081 taaaggaaaa gggattttac gccaaaaacg tgttcaatat caaaaacaga aacaggcagc
1141 cccaaccact cttcaagatt gagcttgaac cagaaaacaa gcctcctaga aaaaacgagg
1201 ttcacccaat ttacaaactc cagctccttt tgcaccgtag gatcacggta gaagagccgc
1261 acaaacgcaa cgctcctgta caatgtacaa actgccaaga gtatggccac acgaggtcat
1321 attgtacact tcgcccggtg tgcgtagtct gtggagatct ccacgactcc aaacagtgtc
1381 aaattaacaa agaaaatgca tgcgagaaaa aatgtaataa ctgcgggggc aatcacacag
1441 caaactacag aggctgtcca atctacaaag agctgaaaat ccgtcttcac aaaagaatga
1501 acacggcgcg ggcacaccaa ggatcagcta ccctgatacc atcagagaca aatcctgaag
1561 taattttctc gaaagcagct agtttcgctc cctggcctac attcaacact aacaagacaa
1621 catttgctaa cgttttaaaa tcaggtatga cgcctccaac ccaaaactcc cgaactccac
1681 atgaagtgca cacaaaatta gacacacaac aaaactatca cccagctgcg cagcaggaaa
1741 caaaaactga agctatgatg caagccttac aacagagcat gatggaattt atgacattta
1801 tgaagaccac cattcaagac atgatgcgta atcaaaacct tttgatacaa atgcttgtag
1861 cccaacaatc aaataaataa tggctacctt acgcatagct acgtggaacg ccaatggcgt
1921 ctcacagcgc aaacttgagc tagctcaatt cctacatgag aagcatatcg acgtaatgct
1981 tctttcggaa actcatctca caagcaaata caattttcaa ataagagact accatttcta
2041 cggtacaaat catcccgacg gaaaagcaca cggtggcacc gccatactca taaggaaccg
2101 tatgaagcac cacttttaca aagaatttgc ggaaaatcat cttcaggcca catctatcaa
2161 cattcagctg gatgacaaca ctctccttac actagcggcc gtatactgcc ccccccgttt
2221 cacagtatta gaagctcaat tcctggattt cttccaagca ctagggccac acttcattgc
2281 agcaggcgac tacaacgcta aacatactca ctggggatcg cgacttgtga acccaaaagg
2341 aaaacagctt tataagacga taataaaagc cactaataaa cttgaccatg tttcccccgg
2401 gagtcctaca tactggccat cagacctcaa taagctgcca gacctgatcg acttcgcagt
2461 tacgaaaaat atttcccgca gtttggttaa agctgaatgt ctgccggatc tctcatctga
2521 tcactcgcct gtactaattc acctccgccg atacgcagaa aacgtgaaac caccaaccag
2581 attgacctct agcaaaacaa actggctcag gtataaaaaa tatataagtt cacatattga
2641 gctaagccca aaactcaata ctgaatctga tatagagagc tgcacgtgtg cattgcaatc
2701 catccttact gcagcagctc ttactgcaac acccaaaata acaaataata caattaattc
2761 aaaaaagacc aacgtacaaa tcgagcaact cgtccacgta aaacgtcgct tacgcagaga
2821 atggcaatct tccagatccc caactgcaaa acaaaagcta aaagtagcca cacggaaact
2881 ggccaacgct ctgaaacaag aagaggacga cgatcagcgc cgatacatag agcaactcac
2941 accaacaggc acaaaacaaa agtcactgtg gcgagcccac tcaactcttc gcccaccgac
3001 tgaaaccgtt ttgccgataa ggaattcatc aggtggctgg gcccgtagtg atgaagacag
3061 agccaacaca tttgccgctc acctacaaaa tgtgttcacg ccaaaccagg ctactagcac
3121 attcgcgcta ccgtcctatc ccgtaaaccg ccatcagcaa cacaccccaa ttgtgtttcg
3181 tcctaaagaa ataactaaaa taatcaaaga caatctcagc ccgaaaaaat cccccggcta
3241 cgaccttata acaccggaaa tgatcatcca gctgccacat tctgcagttc gctacataac
3301 caagctcttt aatgccatca ccaaacttgg ttactttcca caacgatgga agatgatgaa
3361 gatcataatg attccaaagc ctggtaagaa ccacacagtc gcttcatctt acagaccaat
3421 aagtctactc tcatgcattt cgaaactatt cgaaaaatgc ctgctgatcc gacttaatca
3481 acatctgata taccacaata taatcccagc ccaccaattt ggatttcgcg aaagccacgg
3541 aaccattgaa caggtgaatc gtattacaac ggaaataaga actgcatttg aatatcgcga
3601 atactgtaca gcagtatttt tagacgtatc ccaagcattc gacaaagtct ggctcgacgg
3661 cctaatgttt aaaattaaaa catccctacc cgaaagcaca cacaaacttc taaagtctta
3721 cctctatgac agaaagtttg cagtgcggtg caacactgcc acttccactg ttcatacaat
3781 tgaggctgga gtcccccaag gcagcgttct tgggccaacc ttatacctca tctatacagc
3841 cgacatccct acaaatagtc gcttaacggt atccacattt gccgacgata cagctatcct
3901 tagccgttca aggtccccta tccaagctac agcacagttg gcactgtacc tcatcgacat
3961 tgagaagtgg ctctctgact ggcgaataaa agtaaacgag caaaaatgca agcacgtgac
4021 gtttacgcta aacagacaag actgtcctcc gctcttgttg aacagcatac cactcccgaa
4081 agcagacgag gtaacgtacc taggagtaca cctagacaga agactcacat ggcgcaggca
4141 cattgaagcc aaaaaaaccc aacttaaact caaagccaac aacttacact ggctcatcaa
4201 ctctggttct ccgctcagcc tagatcacaa ggtcttgctc tacaattcta tattgaaacc
4261 aatctggacc tatggctcac agttatgggg caatgccagc aacagcaata ttgacatcat
4321 tcagcgagca caatcaaaga ttctgagaac catcactggg gcaccgtggt acgttcggag
4381 tgaaaacatc caaagagact taaatatccc atcagttacc aacgcaatca cggaacttaa
4441 ggaaaaatac catagcaagc ttcacacgca ccccaaccac ctagcgcgag gtctaatcca
4501 gctcagcagc cgttcccgtc tccggcgaaa ggacctacca acccagcgaa taaattatta
4561 gggccgttta aacatagaac agttggaaaa ataatacaac tgttcaaaaa atacttgtta
4621 tagttaagat ttttaaactt attgttagtt cttatacaag aagattcaat aaataaaagc
4681 aaagtaaaat aaaaaaaaaa aaaaaaaa
//