Gene or accession: new gene
Missed gene
Comments: I believe there is an unannotated gene encoding a tetraspanin (four
transmembrane protein) in gb|AE003842.1 and gb|AE003790.1.
We have sequenced a BDGP cDNA, LP06288, with the sequence
TCACATCGAACGAACGGATTATCCAGCTAGCCAACGAGAAACCCGAACAGAACCCAGCACCATGAACTGTCTATCCGCGA
TGTTCAAGTACCTGCTGTACTTGCTCAACCTGGTGTTCGTGGCCGGTGGCATCCTGCTCATTGTGGTGGGCTCCATCATG
CTCTCCACGATGGGCAACTTTACGGCCTTCGACGGAGGCGTTAACACCCAGACCATCCCGATCTGCATTATCGTCATCGG
AAGTGTCACCTTCGTAGTGGCCTTCTTCGGATGCTGCGGCACCATTCGCGAGAACGCCTGCTGCACCACCATCTACGCCA
TCTGCATGCTGATTCTGTTCGGCCTGCAACTGGCCCTCTCCATCTGGATCTTCGCGGCCAACGACAAGTTCCTGTCCAGC
ATGGGCAAGGCAGTGGACAAGGCGTGGGATGAGAACAATGCCGCCCAGGGATACCCCATGGATGCCCTCCAGTTGGCCTT
CTCTTGCTGTGGCAACACGGGATACCAACAGTATGAAACCGTGCCCAGCTCCTGCTGCGGCTACAAGGATCGCACCAAGG
TGTGCGAAGCGGAGATCTACAGCCAGCGACCTGGCTGCCGGCAGGAGTTCGTCGATTTCTGGGCCTCCAATACGGACCTG
ATTCGATGGAGCAGTCTGATCATCGCCCTCTTCGAGCTGGGCATCTTCATCATGTCGTGCTGCCTGGCCAGCGCGATGAG
GAAGCGCTAGAGCCGAAGTCAGATACAATCCTTAGACGTAGCCCAGTTCATAGCATAAATCCAACACACGAATTCCTCAC
TCACTCACTCACCGTAAATAAACCAGAATAGGTTAAGCCCAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
It encodes a tetraspanin with sequence
MNCLSAMFKYLLYLLNLVFVAGGILLIVVGSIMLSTMGNFTAFDGGVNTQTIPICIIVIGSVTFVVAFFGCCGTIRENAC
CTTIYAICMLILFGLQLALSIWIFAANDKFLSSMGKAVDKAWDENNAAQGYPMDALQLAFSCCGNTGYQQYETVPSSCCG
YKDRTKVCEAEIYSQRPGCRQEFVDFWASNTDLIRWSSLIIALFELGIFIMSCCLASAMRKR
There seem to be problems with the Celera sequences here. They have two
scaffolds that have this sequence, which would seem to imply that they overlap
and therefore should be one scaffold. Secondly, the sequence in each of these
two scaffolds seems to have a single base insertion causing a frameshift,
immediately after the following twenty base pairs (CTGCAACTGGCCCTCTCCAT).
This single base insert is also not present in the htgs sequence of
gb|AC008288.7 and gb|AC009342.4 from the Rubin lab.