Gene or accession: CG17439
Release: 1
Gene annotation error
Gene CG17439 has a mistake in the supporting evidence or functional assignment.
Comments: CG17439 can be deleted from GadFly--it appears to be part of an X
element (67% identity but over whole length of gene).
Query= CG17439|FBgn0037210|CT38533|FBan0017439 GO:<up></up> located on: 3L
80B2-80B2; |cDNA sequence
(616 letters)
Database: /data/blast/db/na_te.dros
55 sequences; 282,078 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High
Probability Sequences producing High-scoring Segment Pairs: Score
P(N) N
gb|AF237761|X-element ROXELEMENT 4740bp 720 1.1e-39
2 gb|X06950|G-element DMREPG 4346bp Derived from X06950 (g8... 130 0.9998
1
>gb|AF237761|X-element ROXELEMENT 4740bp
Length = 4740
Plus Strand HSPs:
Score = 720 (114.1 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 260/387 (67%), Positives = 260/387 (67%), Strand = Plus / Plus
Query: 236 GACGTAGGCCT-ACCCGCGACGTCAATGTTG-GC-CACATTTCATGCTACTGACGTCCAG 292
||||| || | ||| | | ||| | || | ||| || | | || |||||
Sbjct: 3855 GACGTGTGCGTCACCTAC-AGGTCCC-GATGCGAGCACGACGCAGCCGA-TGGTATCCAG 3911
Query: 293 GACTTCTCATTAACATTTG-CGGAATGGGCAAAACGCTGGAACATTGGCATCAATGGTGA 351
||||| ||| | | || |||||||||||| ||| ||||| |||||||||||| |
Sbjct: 3912 GACTTTGCAT-ACCGGTTCTCGGAATGGGCAAGACGATGGAATATTGGCATCAATAGCAG 3970
Query: 352 CAAATCTGCGAATGTGTGCTACACGCTGAAAAGGAAAACATCACCGGCTTTACT-CATCG 410
||||| || || |||| ||| | || ||| ||| ||||| | | || |||||
Sbjct: 3971 TAAATCCAACAACGTCTGCTTCACTTTAAAGCGGAGAACGCCACCGCCCGT-CTACATCG 4029
Query: 411 ATGGC-TCCCTTATCCCACAGTCCAGTTCAGCCAAATATCTTGGTGTAATATTGGATCGG 469
| | |||| | |||||| | | |||| || || ||||| || | |||||||
Sbjct: 4030 AGGAAGTCCCCG-TACCACAGCCGAACGCAGCAAAGTACCTTGGAGTGCTTCTGGATCGC 4088
Query: 470 AGACTAAACTTCTCGAAGCAAAATAGTGCGATAAGAGTGCGTATACGTGCAGCAGCCTCA 529
||||| | || || ||||| | | || ||| ||| ||||||| | |
Sbjct: 4089 AGACTCACATTTTCCAAGCATGTGACCGACATCAGAACGCGCCTACGTGCTAAGGTGGCG 4148
Query: 530 AAGCACTTCTGGCTAATTAATTCGCGAAGTAAAGTGTCACTCTCCAACAAGGTGACAATT 589
||||||| ||||||| || |||||| |||||| |||| || ||||||||| ||||||||
Sbjct: 4149 AAGCACTACTGGCTACTTTCTTCGCGCAGTAAATTGTCGCTATCCAACAAGCTGACAATT 4208
Query: 590 TAGAAGCAAATTATAGCGCCAATATGG 616
|| || || || |||| |||| |||
Sbjct: 4209 TACAAACAGATCCTAGCACCAAACTGG 4235
Score = 490 (79.6 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 194/293 (66%), Positives = 194/293 (66%), Strand = Plus / Plus
Query: 95 TCGTATCTCGAAAAGAGAAGATTTGCGGTACGATTCCATCCGGCCCTGTCAAATGAGCAT 154
||||| || ||| || || || || || || || ||| | || | || | |||||
Sbjct: 3669 TCGTACCTGGAAGGAAGGAGGTTCGCTGTGCGCTTTCATTCAGCAATTTCCACCGAGCAC 3728
Query: 155 AATGTGGCAGCCGGAGTACCACA-GGTAAGTGAACTTGGCCCGCTGCTTTACTGCCTGTA 213
|| |||||||| || || ||||| |||| ||| || ||||| ||||| |||||||||||
Sbjct: 3729 AACGTGGCAGCTGGTGTTCCACAAGGTA-GTGTCCTCGGCCCCCTGCTCTACTGCCTGTA 3787
Query: 214 CAGCTACGACATGCCTCGGCCAGACGTAGGCCTACCCGCGACGTCAATGTTGGCCACATT 273
||| |||||||||| | |||||| ||| |||| || || || ||||||||||||||
Sbjct: 3788 TAGCCACGACATGCCGCAGCCAGATGTAAGCCTTTACGGGAAATCTATGTTGGCCACATT 3847
Query: 274 TCATGCTACTGACGTCCAGGACTTCT-CATTAACATTTGCG-GAATGG-GCAAAACGCTG 330
| | | |||||| | | || || | |||| | | | ||| || ||
Sbjct: 3848 TGCCG--A-TGACGTGTGCGTCACCTACAGGTCCCGATGCGAGCACGACGCAGC-CGATG 3903
Query: 331 GAACATTGGCATCAATGGTGACAAAT-CTGCGAATGTGTGCTACACGCTGAAA 382
| | || | | || || | || ||||| | || | ||| || ||
Sbjct: 3904 GTATCCAGG-A-CTTTGCATACCGGTTCTCGGAATG-G-GCAAGACGATGGAA 3952
Score = 309 (52.4 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 81/105 (77%), Positives = 81/105 (77%), Strand = Plus / Plus
Query: 1 TAAAGACACTACCGAGATGTGTGATCCTCTACATTACGTTGTTATTCAAGGCTATTGTGA 60
| ||| | || || ||| | |||||||||||| |||||| | ||||| ||||||||||
Sbjct: 3217 TGAAGGCCCTGCCCAGACAAGCGATCCTCTACATAACGTTGGTTTTCAACGCTATTGTGA 3276
Query: 61 GACTGCAATACTTCCTTCCACAGTGGAAGCTCGGTCGTATCTCGA 105
| |||||||||||| | |||||||||||||| ||||| |
Sbjct: 3277 GGTTGCAATACTTCCCTTATCAGTGGAAGCTCGGGATAATCTCCA 3321