Gene or accession: CG2042
Release: 1
Gene annotation error
Gene CG2042 has incorrect exon/intron structure or translation start site.
Comments: CG2042 shows a good match (71%) to the X element from 166-662 of its
774bp.
Query= CG2042|FBgn0032944|CT3379|FBan0002042 GO:<up></up> located on: 2L 39D3-39D3;
|cDNA sequence
(774 letters)
Database: /data/blast/db/na_te.dros
55 sequences; 282,078 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High
Probability Sequences producing High-scoring Segment Pairs: Score
P(N) N
gb|AF237761|X-element ROXELEMENT 4740bp 876 1.1e-48
2 gb|X77571|BS DMBSTE 5126bp Derived from X77571 (g453966) ... 189 0.020
1
>gb|AF237761|X-element ROXELEMENT 4740bp
Length = 4740
Plus Strand HSPs:
Score = 876 (137.5 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 264/369 (71%), Positives = 264/369 (71%), Strand = Plus / Plus
Query: 296 AAGAAGCTGTCGACACT-CTCACCCATAATATCAAGGCTGCAGCCAGACTGGCAAGACCT 354
| || ||| |||| ||| |||||| | ||||||||| | ||||| ||| |||||| |
Sbjct: 2617 ATGATGCTATCGA-ACTGCTCACCAACAATATCAAGTCAGCAGCTAGATTGGCAACTCGC 2675
Query: 355 AGCCCGGTGCAGAGGCCCACAGCAGCTAAAATCCCGATCACCAGAGAGATACTGCTCCTT 414
||| | | |||| | |||| | |||||| || |||| ||||| ||||| |||
Sbjct: 2676 AGCATATCTCGGCAGCCCGCGGCAGATCGAATCCCAATACCCAGGGAGATCCTGCTGCTT 2735
Query: 415 ATAGCTGAGAGGAGGTGTTTACGCAAAAAAAGGATGAGGTCTCGCCACCCGCTGAACAAA 474
|||||||||| |||| | ||||||| | ||||||||||||| |||||| | |||||
Sbjct: 2736 ATAGCTGAGAAGAGGCGCTTACGCACTAGGTGGATGAGGTCTCGGCACCCGTCGGACAAA 2795
Query: 475 GCGGATTGGAACAGAGCAAAGTGTGTTTTAC-ATCGCGCCCTGGTCGAACATAAATCAGC 533
|||| |||||| |||| | || | | || |||| |||| || ||| | ||
Sbjct: 2796 ACGGAATGGAACCGAGCTCTGAGTAGGCTCCGAT-GCGCGTTGGTGCTGCACAAAGCCGC 2854
Query: 534 TTGGTTCTATGACAGGTTTGCAAACATTGGAAACGAATGTGATGCGACGCACTCGCTATG 593
|||||| | || ||| |||| || | ||| |||| | || |||||||| ||||| ||
Sbjct: 2855 ATGGTTCGACGAAAGGCTTGCCAATACCGGAGTCGAAAGCGAAGCGACGCATTCGCTGTG 2914
Query: 594 GAATGCTACGCGCGCTATCCAAAAGCATTGTGCAAGGAAAGCGCCATTGGCTGATAATAA 653
||| || |||||||| ||| ||| || ||| | ||||| ||||| | | |||| ||
Sbjct: 2915 GAAGGCCACGCGCGCAATCAAAAGGCGTTGCACGAGGAAGGCGCCTCTAGTCGATAGCAA 2974
Query: 654 CGGTGCATG 662
||| ||||
Sbjct: 2975 CGGGACATG 2983
Score = 353 (59.0 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 107/151 (70%), Positives = 107/151 (70%), Strand = Plus / Plus
Query: 166 GCGGGCGACTGGAATACATCCCACTGGCTTTGGGGAGCGGAGAGATGCAATCGAAGAGGG 225
|| ||||| ||||| | ||||||||||| ||||| |||| || |||| | ||||||
Sbjct: 2229 GCAGGCGATTGGAACGCGTCCCACTGGCTCTGGGGTGCGGGAAGGAGCAACCAAAGAGGC 2288
Query: 226 CGTGCGCTAGCGAATCTGGTCCTAAGCACAGGTATGAGCTCCCTAGTAACCGGAGGTCCT 285
||| |||||||||| ||||||| | | || ||| |||| ||| ||||| ||
Sbjct: 2289 ATTGCATTAGCGAATCTCGTCCTAAATTCGGAGGTGGACTCGCTAGCAACAGGAGGACCA 2348
Query: 286 AAAAGATTCCAAGAAG-CTGTCGACACTCTC 315
| ||||| || | | |||| || ||| |
Sbjct: 2349 ACAAGATACCCGTACGGCTGTAGAGGCTCAC 2379