Gene or accession: CG5929
Release: 1
Gene annotation error
Gene CG5929 has incorrect exon/intron structure or translation start site.
Comments: CG5929 shows a good match (76%) to the X element from 1287-1664 of its
2084bp.
Query= CG5929|FBgn0032982|CT18625|FBan0005929 GO:<up></up> located on: 2L
40C3-40D1; |cDNA sequence
(2084 letters)
Database: /data/blast/db/na_te.dros
55 sequences; 282,078 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High
Probability Sequences producing High-scoring Segment Pairs: Score
P(N) N
gb|AF237761|X-element ROXELEMENT 4740bp 603 1.4e-35 2
>gb|AF237761|X-element ROXELEMENT 4740bp
Length = 4740
Plus Strand HSPs:
Score = 603 (96.5 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 163/213 (76%), Positives = 163/213 (76%), Strand = Plus / Plus
Query: 1287 TTTGTGCGGCGCTACGAGATCGATATTCTGCTGCTCAGCGAGACTCATTGCAAGGAGGCA 1346
|| ||||| || |||| |||||| | | |||||||||||||| || ||||||| ||||
Sbjct: 1896 TTCGTGCGACGTCACGAAATCGATGTATTACTGCTCAGCGAGACACACTGCAAGGGGGCA 1955
Query: 1347 CAGGCACCCAAAATATTTGGATTTG-AGTCTTACACTGCCAACGACCTGAGCGACGGTAA 1405
|| | || || |||| ||||||| || || |||||||||| || | ||| | || ||
Sbjct: 1956 GAGACGCCTAAGCTATTCGGATTTGTAGCCT-ACACTGCCAATGATCCGAGTGGTGGCAA 2014
Query: 1406 CGCCAAAGGTGTTGCAGCGATCCTGGTCAAATCCGGCCTAGTCCACTTTCCTCTTACACC 1465
||||||||| | ||||| ||| | ||||| |||| | ||||||||| || |||||
Sbjct: 2015 CGCCAAAGGCGGAGCAGCTATCTTAATCAAAAATAGCCTTGCCCACTTTCCGCTAACACC 2074
Query: 1466 AATAGCCACTGACGAGGAGCAACTCGCGTCTGC 1498
||||||||||| | ||| |||||| ||| | ||
Sbjct: 2075 AATAGCCACTGCCAAGGTGCAACTTGCGCCGGC 2107
Score = 469 (76.4 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 145/203 (71%), Positives = 145/203 (71%), Strand = Plus / Plus
Query: 1463 ACCAAT-AGCCACTGACGAGGAGCAACTCGCGTCTGCCCTACGAGATATAAGCTCCCTAG 1521
||||| || || || | | ||| | || |||| | || || | ||| ||||
Sbjct: 2278 ACCAAAGAGGCATTG-C-ATTAGCGAATCTCGTCCTAAATTCG-GAGGTGGACTCGCTAG 2334
Query: 1522 CCACCGGAGGTCCTACAAGATTCCCGTTCGGCAGTAGAGGCTCCCCAGGCTATATAGATT 1581
| || ||||| || ||||||| ||||| |||| |||||||||| ||||| || || ||||
Sbjct: 2335 CAACAGGAGGACCAACAAGATACCCGTACGGCTGTAGAGGCTCACCAGGGTACATCGATT 2394
Query: 1582 TTGCTGTCAGCAAGGGCATTCTGGATATGCACGATGAAATACGTTCCGTTGCTGAGCTCA 1641
|||| | | ||||| | |||| || |||| | | ||| || | |||| |||||| |
Sbjct: 2395 TTGCACTGACAAAGGGTGTGCTGGGCATCCACGCTAACATAAGTGCGGTTGTTGAGCTTA 2454
Query: 1642 GCTCCGACCACCTACCGCTTATA 1664
||||||||||||| || || ||
Sbjct: 2455 GCTCCGACCACCTGCCTCTGGTA 2477