Gene or accession: CG14768
Release: 3
Missed gene
Comments: It looks like this may be a retrotransposon remnant. If you blast
search with the predicted mRNA translated in three frames, you hit a gag=pol
polyprotein precursor matching the cysteines and the active site
>gi|20129709|ref|NP_610160.1| <up>LocusLink info</up> (NM_136316) CG14768 gene
product <up>Drosophila melanogaster</up>
gi|7302250|gb|AAF57343.1| <up>LocusLink info</up> (AE003787) CG14768 gene product
<up>Drosophila melanogaster</up>
Length = 111
Score = 227 bits (579), Expect = 2e-59
Identities = 111/111 (100%), Positives = 111/111 (100%)
Frame = \+1
Query: 1 MAPRPRAISTAQTASPIGTQEETSAAKRDARSVEGITTPYSTCMRNSVQIRQWHRCHLRH 180
MAPRPRAISTAQTASPIGTQEETSAAKRDARSVEGITTPYSTCMRNSVQIRQWHRCHLRH
Sbjct: 1 MAPRPRAISTAQTASPIGTQEETSAAKRDARSVEGITTPYSTCMRNSVQIRQWHRCHLRH 60
Query: 181 AKRVSTLHLVRCPSPGLRPEPQSPTIARPQKKSVHILPTAIVVLDTGSRTF 333
AKRVSTLHLVRCPSPGLRPEPQSPTIARPQKKSVHILPTAIVVLDTGSRTF
Sbjct: 61 AKRVSTLHLVRCPSPGLRPEPQSPTIARPQKKSVHILPTAIVVLDTGSRTF 111
>gi|21298156|gb|EAA10301.1| (AAAB01008944) ebiP5034 <up>Anopheles gambiae str.
PEST</up>
Length = 691
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/47 (44%), Positives = 25/47 (52%)
Frame = \+3
Query: 21 HKYCPNCLAHRHSGGDFRSKEGCKKCGGNNHTLLHMHEELRSDPTVA 161
HK C NCL H S+ GC+ CG \+HTLLH RSD \+A
Sbjct: 237 HKLCWNCLQGSHFVTSCTSRYGCQTCGKRHHTLLHAE---RSDSVIA 280
>gi|21302777|gb|EAA14922.1| (AAAB01008984) agCP4897 <up>Anopheles gambiae str.
PEST</up>
Length = 957
Score = 40.4 bits (93), Expect = 0.004
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = \+3
Query: 30 CPNCLAHRHSGGDFRSKEGCKKCGGNNHTLLHMHEELRSDPTVASMPPPT 179
C NCL H+ \+SK C+KC \+HTLLH \+ T SM T
Sbjct: 263 CENCLGKNHAANRCKSKYTCRKCKQRHHTLLHKEPVHPTTSTTISMQNTT 312
>gi|21214752|emb|CAD32253.1| (AJ487856) gag-pol polyprotein precursor;
hypothetical protein
<up>Drosophila melanogaster</up>
Length = 1830
Score = 38.9 bits (89), Expect = 0.012
Identities = 20/52 (38%), Positives = 25/52 (47%)
Frame = \+3
Query: 30 CPNCLAHRHSGGDFRSKEGCKKCGGNNHTLLHMHEELRSDPTVASMPPPTRK 185
C NC A H D S C C G \+HTLLH S+ \+S PPT++
Sbjct: 464 CLNCFARGHQLRDCTSMHSCFTCKGRHHTLLH-RSPPNSENASSSTSPPTQQ 514