Gene or accession: CG2682
Release: 3
Gene annotation error
Gene CG2682 has incorrect exon/intron structure or translation start site.
Comments: The B transcript (the long one with alternative exons far 5' to the
coding sequence may be bogus. The first few hundred basepairs of this
transcript match in reverse complement an S element (as does the second best
est match, HL02569)
>gb|U33463|S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47,
Last updated, Version 5).
Length = 1736
Minus Strand HSPs:
Score = 707 (112.1 bits), Expect = 9.0e-29, P = 9.0e-29
Identities = 193/235 (82%), Positives = 193/235 (82%), Strand = Minus / Plus
Query: 420 TGTCAAGAAACTCT--ACACA-TTTTGTTTTCATACTTTGTTTTGCTCATTTTCTTAGAA 364
|| ||||||||||| ||||| ||||| ||| ||||||||||||||| |||||||||||
Sbjct: 214 TGCCAAGAAACTCTTTACACAGTTTTGGGTTCCTACTTTGTTTTGCTCTTTTTCTTAGAA 273
Query: 363 CGAA-CACAATTTTTCCGTTATTTTTGGATT-TGCATTGCCTTTTACAATGCTTCTATTG 306
|| | || ||||||||||||||||| || |||||| | |||||||| ||||||||||
Sbjct: 274 ACAATCTCA-TTTTTCCGTTATTTTTGTCTTATGCATTCCTTTTTACAACGCTTCTATTG 332
Query: 305 AGATTTTTTTGACTTTGCTTGCGAACTTTTGCTGATCAAATGTGCTTAAAGCAAATTATT 246
||||||| |||||||||| ||| ||||| ||||| || ||||||||||| |||||||
Sbjct: 333 CAATTTTTTC-ACTTTGCTTGTGAAATTTTGTTGATCTAACGTGCTTAAAGCGAATTATT 391
Query: 245 AAATTTAATATTTAATAAAAATGCCTGGAAAGAGATTAACTTTTGAACTTACCCA 191
||||||||| ||| |||||||||||||||| |||||||| | |||||
Sbjct: 392 AAATTTAATG------AAA--TGCCTGGAAAGAGATTGGCTTTTGAAGTGACCCA 438
while the best est match to this region of the gene, GM22420, matches a
trasnsib element
>transib1 TRANSIB1 2167bp
Length = 2167
Minus Strand HSPs:
Score = 234 (41.2 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 160/261 (61%), Positives = 160/261 (61%), Strand = Minus / Plus
Query: 311 GATTTT-GTGGTACAGC-AACGCCAG--ACGAAGGTATATGATGGTGATGCTGATGCGTT 256
||||| | | | ||| ||||| | ||| || ||||| | || | ||| ||
Sbjct: 1710 GATTTGCGCAGCAAAGCCAACGCATTTAATGAATGTGAATGATTTTAATTCAGATATTTT 1769
Query: 255 TGATGGTGGGAGTGT-AAACTTTTCACTCCTCGGCGAAAGATCGATCTCCCGGCGCAGAT 197
||||| | | | | ||||| |||| | | | ||| | | | | | ||| |||
Sbjct: 1770 TGATGCTAA-A-TCTCAAACTCTTCAGTT-T--G-GAATAAGCCCTTTACATGCGTGGAT 1823
Query: 196 GAGCCAATTCTGTATTCTGTATGAATA-TTGTAGTTACGTATGCACAGAAACTAAACATT 138
|| || || ||| ||| | || | ||| | | || | || || |||| ||
Sbjct: 1824 TCGCTTCTT-TGAATT-TGTTTTAAAACTTGCA-T-ACAGA-GCT--GATCTTAAAACTT 1876
Query: 137 AAC-TA-TTTAAAGTCATTTTTTAAATTTATTTTATTATCTTTAC-ACATGAGTTTTACT 81
| || |||| | || | | | | ||||||||||| | ||| | | || | | || |
Sbjct: 1877 GGCATAATTTACA-TCTTAATATGATTTTATTTTATTTTATTTTCTATAT-A-TAATA-T 1932
Query: 80 TAAGATAA-ATTTAATTAAAT 61
|| | || ||||||||||||
Sbjct: 1933 CAATAAAATATTTAATTAAAT 1953