Gene or accession: CG13206
Release: 3
Gene annotation error
Gene CG13206 has incorrect exon/intron structure or translation start site.
Gene cDNA sequence:
>Or47b
ATGAACGACTCGGGTTATCAATCAAATCTCAGCCTTCTGCGGGTTTTTCTCGACGAGTTCCGATCGGTTCTGCGGCAGGA
AAGTCCCGGTCTCATCCCACGCCTGGCTTTTTACTATGTTCGCGCCTTTCTGAGTTTGCTGTGCCAGTATCCCAACAAGA
AGTTGGCCAGCTTGCCCCTGTACCGATGGATCAACTTGTTCATCATGTGCAATGTGATGACCATTTTCTGGACCATGTTC
GTGGCCCTGCCCGAGTCGAAGAACGTGATCGAAATGGGCGACGACTTGGTTTGGATTTCGGGGATGGCACTGGTGTTCAC
CAAGATCTTTTACATGCATTTGCGTTGCGACGAGATCGATGAACTTATTTCGGATTTTGAATACTACAACCGGGAGCTGA
GACCCCATAATATCGATGAGGAGGTGTTGGGTTGGCAGAGACTGTGCTACGTGATAGAATCGGGTCTATATATCAACTGC
TTTTGCCTGGTCAACTTCTTCAGTGCCGCTATTTTCCTGCAACCTCTGTTGGGCGAGGGAAAGCTGCCCTTCCACAGCGT
CTATCCGTTTCAATGGCATCGCTTGGATCTGCATCCCTACACGTTCTGGTTCCTCTACATCTGGCAGAGTCTGACCTCGC
AGCACAACCTAATGAGCATTCTAATGGTGGATATGGTAGGCATTTCCACGTTCCTCCAGACGGCGCTCAATCTCAAGTTG
CTTTGCATCGAGATAAGGAAACTGGGGGACATGGAGGTCAGTGATAAGAGGTTCCACGAGGAGTTTTGTCGTGTGGTTCG
CTTCCACCAGCACATTATCAAATTGGTGGGGAAAGCCAATAGAGCTTTCAATGGCGCCTTCAATGCACAATTAATGGCCA
GTTTCTCCCTGATTTCCATATCCACTTTCGAGACCATGGCTGCAGCGGCTGTGGATCCCAAAATGGCCGCCAAGTTCGTG
CTTCTCATGCTGGTGGCATTCATTCAACTGTCGCTTTGGTGCGTCTCTGGAACTTTGGTTTATACTCAGTCAGTGGAGGT
GGCTCAGGCTGCTTTTGATATCAACGATTGGCACACCAAATCGCCAGGCATCCAGAGGGATATATCCTTTGTGATACTAC
GAGCCCAGAAACCCCTGATGTATGTGGCCGAACCATTTCTGCCCTTCACCCTGGGAACCTATATGCTTGTTCTGAAGAAC
TGCTATCGTTTGCTGGCCCTGATGCAAGAATCGATGTAG
Protein sequence:
>Or47b
MNDSGYQSNLSLLRVFLDEFRSVLRQESPGLIPRLAFYYVRAFLSLLCQYPNKKLASLPLYRWINLFIMCNVMTIFWTMF
VALPESKNVIEMGDDLVWISGMALVFTKIFYMHLRCDEIDELISDFEYYNRELRPHNIDEEVLGWQRLCYVIESGLYINC
FCLVNFFSAAIFLQPLLGEGKLPFHSVYPFQWHRLDLHPYTFWFLYIWQSLTSQHNLMSILMVDMVGISTFLQTALNLKL
LCIEIRKLGDMEVSDKRFHEEFCRVVRFHQHIIKLVGKANRAFNGAFNAQLMASFSLISISTFETMAAAAVDPKMAAKFV
LLMLVAFIQLSLWCVSGTLVYTQSVEVAQAAFDINDWHTKSPGIQRDISFVILRAQKPLMYVAEPFLPFTLGTYMLVLKN
CYRLLALMQESM
Comments: Comparison with D. pseudoobscura shows that the first intron should
be shorter. Specifically, the acceptor site used now is not present in Dp,
instead the earlier one I use is present and the exon encodes conserved aa.