Gene or accession: CG9700
Release: 3
Gene annotation error
Gene CG9700 has incorrect exon/intron structure or translation start site.
Gene cDNA sequence:
>Or85e
ATGGCCAGTCTTCAGTTCCACGGCAACGTCGATGCGGACATCAGGTATGATATTAGCCTGGATCCGGCTAGGGAATCGAA
TCTCTTCCGTCTGCTAATGGGACTCCAGTTGGCGAATGGCACGAAGCCATCGCCGCGGTTACCCAAATGGTGGCCAAAGC
GGCTGGAAATGATTGGTAAAGTGCTGCCCAAAGCCTATTGTTCCATGGTGATTTTCACCTCCCTGCATTTGGGTGTCCTG
TTCACGAAAACCACACTGGATGTCCTGCCGACGGGGGAGCTGCAGGCCATAACGGATGCCCTCACCATGACCATAATATA
CTTTTTCACGGGCTACGGCACCATCTACTGGTGCCTGCGCTCCCGGCGCCTCTTGGCCTACATGGAGCACATGAACCGGG
AGTATCGCCATCATTCGCTGGCCGGGGTGACCTTTGTGAGTAGCCATGCGGCCTTTAGGATGTCCAGAAACTTCACGGTG
GTGTGGATAATGTCCTGCCTGCTGGGCGTGATTTCCTGGGGCGTTTCGCCACTGATGCTGGGCATCCGGATGCTGCCGCT
CCAATGTTGGTATCCCTTCGACGCCCTGGGTCCCGGCACATATACGGCGGTCTATGCTACACAACTTTTCGGTCAGATCA
TGGTGGGCATGACCTTTGGATTCGGGGGATCACTGTTTGTCACCCTGAGCCTGCTACTCCTGGGACAATTCGATGTGCTC
TACTGCAGCCTGAAGAACCTGGATGCCCATACCAAGTTGCTGGGCGGGGAGTCTGTAAATGGCCTGAGgttggtatctgt
tccacagaaattcaattcaaaaactttccgttcttgcaacttattttgttttcgtgttacaactttaaatcaattcaact
tttattctttgttttttatattttaagttttaattcgttaatactaatgactttttattttagTTCGCTGCAAGAGGAGT
TGCTGCTGGGGGACTCGAAGAGGGAATTAAATCAGTACGTTTTGCTCCAGGAGCATCCGACGGATCTGCTGAGATTGTCG
GCAGGACGAAAATGTCCTGACCAAGGAAATGCGTTTCACAACGCCTTGGTGGAATGCATTCGCTTGCATCGCTTCATTCT
GCACTGCTCACAGGAGTTGGAGAATCTATTCAGTCCATATTGTCTGGTCAAGTCACTGCAGATCACCTTTCAGCTTTGCC
TGCTGGTCTTTGTGGGCGTTTCGGGTACTCGAGAGGTCCTGCGGATTGTCAACCAGCTACAGTACTTGGGACTGACCATC
TTCGAGCTCCTAATGTTCACCTATTGTGGCGAACTCCTCAGTCGGCATAGTATTCGATCTGGCGACGCCTTTTGGAGGGG
TGCGTGGTGGAAGCACGCCCAT
Protein sequence:
>Or85e
MASLQFHGNVDADIRYDISLDPARESNLFRLLMGLQLANGTKPSPRLPKWWPKRLEMIGKVLPKAYCSMVIFTSLHLGVL
FTKTTLDVLPTGELQAITDALTMTIIYFFTGYGTIYWCLRSRRLLAYMEHMNREYRHHSLAGVTFVSSHAAFRMSRNFTV
VWIMSCLLGVISWGVSPLMLGIRMLPLQCWYPFDALGPGTYTAVYATQLFGQIMVGMTFGFGGSLFVTLSLLLLGQFDVL
YCSLKNLDAHTKLLGGESVNGLSSLQEELLLGDSKRELNQYVLLQEHPTDLLRLSAGRKCPDQGNAFHNALVECIRLHRF
ILHCSQELENLFSPYCLVKSLQITFQLCLLVFVGVSGTREVLRIVNQLQYLGLTIFELLMFTYCGELLSRHSIRSGDAFW
RGAWWKHAH
Comments: The version of this gene in the sequenced D. mel strain is a
pseudogene resulting from deletion of the 3' end. Only the above portions
correspond to the intact gene, as shown by Leslie Vosshall's cDNA in GenBank
for DOR104, and by the D. pseuoobscura comparison. What is missing is the end
of exon 2, intron 2 (present in Dp, but of course I can't be completely
confident about Dm until the intact gene is sequenced from other strains), and
all of exon 3. This gene
>is intact in Dp.