Sequence of Gnomon model for stg1/CG11566 merge: . >gnl|GNOMON|612541286.m TTTGGCCAGGACCACAGCTTCCCTTAGTCGAGTGAAAGTTCTCCAGCGCAACGGACGTGCCCAGCCAGAA ATTCGAAAACAAACCAACTTTTGGCGCGCTTTCAAAGTGTTGGATTTATTTTAGTTTTGTTTTGTTTTTT TTTTTTTTTGTTCGTTCTGGCTCAGTGCAGCTAGTGGAATATAAAATGAGGGATTATCCTTCGGTGCCCA ATGTGTTTCGCGTGGCCTCCACGCACAGCATCAACAGCGAGAATCCGTACAATAACATTCGACCAGCGAA TGTAATCTGCAACACCACCGAAAGGCCGCCGATTGCCATACACCAGCTGACCACTAGTGCATCCATCGAG CACAGCCACCCATCGCAGCAGGCGCAGCACCAGCAGCAACAGTTGCTGCACCACCAGCAGCAGCACCACC ACCAGCAACACTCGCCCTATGCAACATTGCCGCGGGGCCAGCGACTCGCGCCGCAGCAGCATCAGCAAGC CGGTGTAATCAACACGATCTCTGGCAGCATTCCGGCCACGGGATTTAGTTCCCTGGCCGGCAGCTTTAGT GATCTTCAGTTGAACAACATCGGTAATCACAGCAGCAACAGCAGAAGCAATCACAACAGCATCAGCAACA ACCGACGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACTGGTCCCTCATTTGAGTCGCCACCA GCCAGCCATAGAGGTGCAGCAGACGCAGCAACATCAACAGACGCAGCAGCAACATGTCCAGCGGCAGCAG CAGCAAGAGCGCCTGGCCAGCGGCGGTGCTGGTGCTACCGATCCGCAGGGAGGCATCAGCAACATGACCA CCGTCAACGGGGGTTACCTGTGGCTCATCACACCTGTTGCAGCCAGCATTTCTGTCGCCATTGTCATCGC CGCTCTGGCCGGACCCCAGTGGCTCTTCACGGAGGAGAAGCTGCCCAATGCCAACTACAATGGGACGGCC AACTTCAAAGCCCTGGACGATGGCGCCTACATCACCAAGTACACCAAGTCCAGTCTCTGGATATTGTGCA CCACTCTGCCAGGCCTGGATGCTGACTCGTACAACTGCGTTAAGATTGACTACTTTTCCAATGAGGGTTA TCAGCCGGATCCGCACGACTCAACCGCGGCAATACCCTATACGGTCACCAAGTCGTGTCCTATTTTCCTG GCTGCTGGTGTATTTCTAGTGATCAGCTTCATAGTTTTTCTAATCCCCACTTGCTCGCATCAAAACAATC TGTATTATTTTAGCGCGGGAATTCTTTTCATTGTTAGTGGTCTAGTGATGCTGATTGGATTGATTGCCTA TATATCAATACTGAAGGCGGAAATCGGATCGAAGTTAAGACCCCGGTCCACCCTTCAGCCAGCCCTCATC AAGGTCTCCTATGGCCAGAGCTTCTTCCTCTTCGTCTTTGGATTCATTGTCACGGAATTCGTTGGGGTCT TGAATATATTCCTCTTCATCAATTTGCAGGAGGTTAGCTACTACAGTCGCTTGCCCTGTTTTAGTGTGGC AAACATCCACGCCAAGTTAAAGGAGGGCCAGCATCCGTTGAGTGATTCCTACAAGCGGTACAAGCAGCCC GGCATCACCACAGCCAGCCAGGAAGGACTTAGTAGCGCGGGTCAAGGTCAACAGGGTCACCAGAGTCACC ACCCGACGCACCAACCGCATCCGACGGCGCAGCCACCACATGGAATCCTGAGGAGTGGCAATTCCCGACT CCATCAGGTCTACGATGCGGGACGAGGACACCCTGGAATGACCGGACAGATTGGCCATTCCGGACAGACG CAAACACTACCAGGAGCATGTCGCAAGCATCCGAATGCCGGATCGAACTTAAATCTCTATCTGCATAATG ACCTGGAGAGGCGTTTTTACTTCGAAAAGCCAGCTGTGTCCAAGTGTAATCTGCACTCGCGCAGCTTCGC CAAGTCGTTGAATGAGCTTTGCACGGATACGTCCGTGTCCTCCACCCATGTTCCCGCACCCCTTCTCCCT TCCGCTGCCGACCCATTACCTGCCCCCGCCCTGTTCGCCGACTTGCCTCAGGAATTTCCACTCACCCGAT CCGTATCTACGGCCACGGAAATATATCCAGCTTCATCTTCGGCTCCAGCTCCGCCCTCCGCTCAAATGAA ACGAAAGCAGCAGCGGAACATGGCCACTAATACGAACACGAAGATCTCCAACAATCCCCCATCCTCCAAC TCGCAGATGGCAGATCAGTCGCGTCTTTGTGGCCTGAAGCGTGGCCTCCGGAAGACCAAGGATGAGCTAT TCCAGGAGTTCTGTCGGCGAGCTGGTATGCGCAGCAAGCCAAAGAACATCTACTACATCAGTGGCGGGGA TGAGGCGGAGGAGGAGGAGCAGGAGGATCAGGCCAAGCGGGAGGAAGTTCCGGATGATCCGCATCGCGAT GACGACGATGACGCGGATGGCGATGACCACGGTTTCAGGCAGTTCAACCGCATGGAGGAGGAACATCTCT ATGTGGTGGGAGACCATGCCCAATTGGTGGTGCCGCGTCGCACGTCCATGTGCGTGGACTCCATGGGACA GCCGCTGCGCAGACTGAACTCGAATCTGTCCCTGCACACGGATCTCAGCTTCCCCGGAACGGGTGGCTAT CCGGGCATGCGAATGTCCCTGCCACAGCCGGCTGATCTCGGCCAGAGTCGCACCTTGCCGCGCTGCTTTC TGCGACAGTCGTCCGATTCGCTGGCTTCCCAGGGCTATCCATTGGGCTCCAGTCAGCAGCGTTTCTCCCA GCTGATGCTGAATCAGCAGCAGAATCGCTTCGTGTCCTCCACGTTGACACTGCCCCAGGTGGTGGCGCCC AAGAGTCAAGTGCAGTGGCCCACGGCGATTCCCTCCTCGCCGTCGAACTACTCGAATGGCTATCAACAGC ATCCGCAGCCCATTTACCCAGCTCCAACATCCGGAAGTGGAGCACCTGGGACAACGGCTTCGGTCTCCGG ACCACCGAAATTCCAGCGCGGCTACGCATTCGACGATCAACAGCGTAGGTCCAGTTTTGTGAGCGATGCA TTCGACCTGGACGAGATCGAGCGGGAGCGACGGCGATCCCATGCCAGTCTATTTGGAATGGGTCAGGTGA GGGATCCCTACGATCTCATCAATGGCACCGCCGTCTAAGATACCCGCAACCACATACTCGTAATCAATAA TGCCAAAGAAACGAAGAGCTAGCATTTTTTTTCGGAAGTAAGGTGACAAAAGAATAAGTATATGTCTATT GCAAAAATAAACTATTTAATGATTATATACAATATATATAATAGATGGTCCCAGCAGGTCTTAAAAAATT GATAAACTAAGCGCACAATCAGGCCCACAAAATCTATCAAAAGTATACATACACAAGTGAAAAAAGAGTA GTAAAATTCGAAATAGGTCTTTAAAAATTAATAAATGCGCACAATTTTGGCCAAAAAA . . CG12688, lncRNA:CR45484 merge as long non-coding gene: Gnomon generates a longer 11-exon model merged with the upstream lncRNA:CR45484 . It looks like it’s stitched together from two PacBio reads covering 10 and 4 exons, and probably should be 12 exons (missing an exon at the 5’ end): . >gnl|GNOMON|612392262.m GAACAGTTATAAGAAATATCGATTCCCCGAAAGTTTCGATATTCGAAAGCGTCATTCGTTGGCATGATTA TTAGCCTGATTAGCCTGATTCTAATATTCTAAAATCTATTGTAGAGCTTTAAAAACATCATCAGATTCAA AATTGAAGGTGACTTAGACAATAAAAAACAATGAAAATTACCATTTTTTAAATAACGTGGAGTTAGTTGG CCACCCTAAATTAACCTATAATTTTTAAAGGCTTCTTAATCGGTATCGCAGCTTTAGGGAGTTGCCAGCT TAAAATTTGAATATTGTACTGATTTTAACATTTGTACACATGTTGTTTACAAACATTCTGGATTTTAGAA CATCAAGATGTACGTTGCATTTCATTAAGTTTCCAGCGCCAAGAGGATGGTGAATACTGGAGATCAAAAA GGAGCCCAGCGAAGAGTCAATAATCCTAACCATACTATTCCAGTTCCTCCGGTGGCAGTTTGTGGCAAAG ATCAGGAATAAACACACAAGGGAGCTGAAGAAGGAATCGAAATCAGTTTGGACAAGTCCAAATTCTTCCG GATTTTAATGGATCTTCATGTGTTTTTGAACAGATTTTCGAACAACCTGGAGGACACTGTGTTCACCCAA GTGGGCACCTTCCTTGCCGCGACACCACCACCACCCACACCGGCGTGACAAGGCAGGCTTCGCTTTCCGC GCCTTTGCATGCGACAAGTTTGTCACTGTGATTTATGCCTGAGAGGAGAGGGTTACACCACCGAACCGAC AAGCGGGTGTGGTGGGTGAATAGTCAAAAAAGCGGGTACACACGGCCGTGCCAGTGGAGAACAAGGGGCG GCAGTCAAAAAGACAGCCGAGCAGAGGAAGCTGAGCCAGTCGGGCGCTGGCAGGCGTCAACAGGATGCGG AGGACGAAGGAAGGGGTGGATCGGCGTCGAATGGCGAGTGGCGGGTGGCGGGTGGCGGAGGAGAAAACGG ATGAGCAGGCGAAGGAGCGAACGGCGGAGGGTTGCGATTACAGTGTCATTGGCAGCGTCGACGGCGTCAC TTTGCGCACTGCCAAGTGCAGCCACCAGAACCGAATCCAATATCCAAATCACAGCCACACCACCCAGCCA ACGAAACGGGGAAAGAAACGACAAGCAGGGCAGGGGCGAATACACGCCCAACAGCTACAATTGAAAATTT TATTTCATTTTTATGGCTTTTGGAAATTAAATTGTTGTCATCGCATACAAAATTAACCAGAGCAGCGGGA TTTGCATAGCCAGTCAAGAGGTGTGACCTCTAACCCCCACCATCCATCATCCACCATCTACCATCTACCA TCTAGCAACTGGCACCCAACAGCCACACGACATAGTCACCGATGTTATTGTTATAGCCGCTGTATCTCAC CCGCTGGGCCTGCGGTCTTTAACATTTAGCAAAACATTTGATTGCCATCAGGATAATCCCGAGGGGATGT CCCAGGACGCGAGGATGTGGGCTGCCAGGAGCTGTTTGATTGCCCGGGAGGAGTATCACATCTCCATAAA GCTCACAAAGCCCGAGGCCTTAAATAAATGTTTATTTTAAGCAATATAGTCAAGCATTAAAATGCAAAAC TTAAAGACTGTCAACGAACTTTAACAAACGTGCACGAGCCAAAGTCAAGAGTAAATAAGGCCTGGAAAAG AAAGCTGGGAGAAGCCACTTCGATGGTCAGCAGCCAAAGTAAAATCTTAGATTTCCAACTTTAAGTTTCC CGACAGCCGGAGTCAATTTGCAATTAGATGTTATCCAAAGGCAAACGGACACCCAGGAAACGGGGATTTG AACAAGGTCCCGCATAAAAAACTAAACACACGCAGCAATCAATCGATTAAAAAAGGGCAAAGGAGGAAAA GTTTTGAGCCGTCGGTGGGCGATGGCACAGACCAGACTAGACGCGGAGGTGAGCGTGGACGAGGCGGACA CCACCTATGGTGTCCAGATCGAGGTCCTGCCGGAAGGACACCCCAGGGACCCGCAGGCAGCTCAAGGAAG TCGCCTGGCTGGCTTTTGTCTAATGCGCCGCTTATCTTGATATTATTTGGCCATAAAAAAGGACACGGAC ACATGGTCGAGGAATGGGCACGGATAACACTGGAAGAAACATTTCACACAGTGAATAAAAAAAGAGATCC GCGCAGCGCTCTTTTGGCTTACTGATTAAATGCCAAATGTGCCAGAATCATAATATAACCGAGACATCGA GATGTTCTTAAAAATCGTTGACATTCTGCACCCATTTTCCGGCTGTAACCCAATCCTCCAGCCAAGTCAT TGTGCTCCTAAGGGCAAGGAAAATTGCAACATTTCACATGTCACAACGAGGGCGATTTCCCTACCACCCA AAATAAAATGGACCATGTCGAATCCTGCGGGTTCCGTTGATTTCCTTGCCCGAAAAAAAAAAAAACCCAG CCACGCGCGTTTCAAATCCCTTTAGTTACACTGTTTCAAAATTAAATATTTACATTTTGTATGCGGAGGC GGATGCGGCGGTCATGAGGTCTGAATCTCGATTCACATGTGGGTGTTTTGGCCGGAATGGTGGTATCTAG CTACTGGATACACTGGACATCTAATCGGTCGGTGGTGGGCTGCCAGCTCCGTCAGCTGGCCGTGAGCACT TGTCGTGGACAGTGGCGCAGCTGGTCAAGGGGACTTGCCGACTAGCTGGACCCCACCGAGTGACGCCCCT GCCAGTCGCATATGAGCTCAGATCATCAATTCCCCGTTGGCCGGATGGGGTGGTGGCCACCATGCAGTTT CCGATGCGCGTTTATTTAGTAATTTGTTTGTCTCCCGACTTAGTCACGGTTTATGGTTGACATTTATTTT ATGAGCGTGAAAAATATATCTCTCGCCAGTGGCAGCCACACCACCCATCGCGGGATTCCAGGCGGGGTTG CAGGCAGGTGGCTGCACCACCCACTCCACCCACATGCGCCACTTAAGCCAATTTTGATAGCGGCTTATTG ATGGTCGAGCGACTGGCGATTTGTGCATTGGTCTCGCTCGAACTTGCTGATTGAATCAGTGCGGTAGTGG GACAAGGACGAGATCGATGGGCAGTTCGTGCTCGCTCGTACAATCTGTACTCCTGGTCAGGCGAGTCGGA TCTTAATGGCTAGTTCGAGCACTTGATATATGGAAATGCCGGATCGACAAGGCAACCAGCGACAGATAAG AGGAAATGTCGTCTGAATTTCTCTACGTTTGGCACTTCCTTAAGCGAGTATTGTTAACTGCTGCTAAGCC CATCAATTATGCCGGGAGGCATACCATCCTTACAAACTTATTGGCCTATAAACTAATCGCATAATTGCAC AAAAGTAATTATCCTTGGGCTGAGCCTCGGCTAGCTCATTGTGCAGCAACTATGCGGCACATCCTATATC CTGCATCCTGAGGCATTAGTGCTTAGCCCTCAACCCCTGGCGCTCTGATTTTTCCACCTTGCTGGCCAAC TATGCGGCTCATCCGCTCCGCTGAACGCCGCCAGAAGGAAGTGCCGTGCAGGACCCAAATCGCAGGACGC AGGGCTCAGATCGCTGCAAAACAGTTGAAAAAACACAACGGGCCAAACAACAAAAACAAACACAAGGACA TCTCTTTGTTTGCAGAAAGCGAAAGAGAGGTGAAATTAAAATCAAGCTGTTGATAGCAATCACACACTCC TGGCTGCCTGAAATGAATAAATCGAGGTGATGCTGGTGCTGGTGCATAACATTGCTCAATAAGCGGACAC CTTGTTGGATTTTTATGGAGACCATGGTGCAGGCACTTCTCGCAGTGGTCATGTCCTGGCTGTTGTCCCT ACAATTCCGATGACGTTGCCAAGAGAGTGGGATGCATGCATCACTAGCCGTCACATGGCCAACTGTTTTG GCTTCCTGCTTTCGACCAATCTGCGACTGTCATCCGTCATTCCATTTACTGGATGCTTGCCATTTCTTTG GCTCCCGAATCTCCGCCTCTTCATCTGCATCTCCTCAAAACAAGATGGAACCATGTCATCTCTGGCTGGC TAAATGGCTCTACGCAACTGCAACTCTTTCGTTGCCCCAAATTGGCCTTGAGGCAATGATTGGCTGCCGC TGCTGCCCAGATGCCGGCACTACCCTCCACCCCCCAGATGGACCACCCCCTTGGGCCACCACAAGAGCCC CAGTCCCCCCGCTTTTTTTGCGTTTCTTTCGCACTGATCTCAGCTGTCGTCGCTTGTTAGTGCGCACGCG TGTCTTTCTCTCTCTAAGAAGCAGACAGCGCGTGTGTTCCCCTCTCCATCGCACTCAACGCCCGCCCAGT CACGTCCTCTCACTCACTCCGCCAGCTCTCCCACTCGCACCCATCACGATCGTGAGGCGTTGATGGCGAT GGCGCTGAAGCTGGCGCGCATGTGCAACGCAGCCACAAAATCGCAATTGCCGGGACCAAAAACCAAAATG AAAAAAAGTACGGAAAAAAAGAGTAACCAAAAGCTTGAGCTGGCACAACGTTGTAAGACATAGTTTGTTG CCAGAGCCACTCCCCCCCCCCTCCTTCCCCTCCACCACACCGCTGTGCCCCTGTGCCTGTGTGTGCGGGA CCTCCCGCAGATAATTGCCCATCATCTCATCAAGTTCCGCCCAGCTATTTAACAACCGAGGAGCAGGAGC TGCAGGAGGAGGTTCGGGGGCCCCGAGAGCAATGAAACCCACAAAACAAGACACCAAAATGATGAACGCG ACCACGCAAAGTAGAAGTAGCTGCCCGATCTGGGAGTCGAGGAAGGAGTCTGGCTCCAGACCATACAATC CCGAGGGCCGCTACGTTCAGCAGGAACTTCTCGAGCGGCCTTGGGCTGGCGCCACCAACATTGAGCAGCA GCTTGGGGCGGCGGCTGCAGATCGGCTCCAAATCGCAGCAGTCCAGGTTGCAGCTCCACTGCAACCACAG GCATCAATAGCACCACCGACGACGAAAAAGCAGGAGGAGACCAAGAAGATCCAAGCATGTTAATCGAGTC ATATCGATTTTGGCGTGGTTCGTGTCTCGGACGTTTTGCCCAACCACCGTCCTTCGCCCCCCCAAAAAGG GGGAGGGTCCGATCCCATCAGCGAACTCGTAACTAAATTGAATCCAATTGCAGACGAGTCAGGCCAAATA ACTGTGAGACATAATGAATGAGTGTTGGCCAAATTGCAACTTGACTTGCCAGCCGGGCAGTTAAGGGTTA ATGGATGGGCACCAAGGGATGGCTTGCAGGGGGGGTTCAGAGGATGGTGCTCTGCATCTTCCAGTTTATG GCCCAGCCACTAATATCTCAATTGGCCAGCGGAAGGTTCGATTAACTGCACCATTGGGCCACCCACCTGG GGCATCTGCACTTGGACATCTGCATGAATGCATCCATAAGGGCAAATGAATCATTCATTCTAAAAGAGTG TACAGTATTCACAGTTTATTTGAATCCCCTTCGAGGACGCCTACCCACGCTATGCAGGACTTAGAGGACA CTCCGATTATCACCATCGACGACGAGGTTCTTCACGACGAGGACGACAAGGACAACTCCCAGGTATCCGC TGATGGTGGCTAGCAAATAACAAACCCCAGTGATAAAGGAAAAATAAAATATACACGAATTTTC .
